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  • Howto install distribute for Python 3

    - by chris.nullptr
    I am trying to install distribute using ActivePython 3.1.2 on Windows. Running python distribute_setup.py as described at the cheese shop give me: No setuptools distribution found running install ... File "build\src\setuptools\command\easy_install.py", line 16, in <module> from setuptools.sandbox import run_setup File "build\src\setuptools\sandbox.py", line 164, in <module> fromlist=['__name__']).__file__) AttributeError: 'module' object has no attribute '__file__' Something went wrong during the installation. See the error message above. Is there possibly an unknown dependency that I'm missing?

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  • How to pass variables using Unittest suite

    - by chrissygormley
    Hello I have test's using unittest. I have a test suite and I am trying to pass variables through into each of the tests. The below code shows the test suite used. class suite(): def suite(self): #Function stores all the modules to be tested modules_to_test = ('testmodule1', 'testmodule2') alltests = unittest.TestSuite() for module in map(__import__, modules_to_test): alltests.addTest(unittest.findTestCases(module)) return alltests It calls tests, I would like to know how to pass variables into the tests from this class. An example test script is below: class TestThis(unittest.TestCase): def runTest(self): assertEqual('1', '1') class TestThisTestSuite(unittest.TestSuite): # Tests to be tested by test suite def makeTestThisTestSuite(): suite = unittest.TestSuite() suite.addTest("TestThis") return suite def suite(): return unittest.makeSuite(TestThis) if __name__ == '__main__': unittest.main() So from the class suite() I would like to enter in a value to change the value that is in assert value. Eg. assertEqual(self.value, '1'). I have tried sys.argv for unittest and it doesn't seem to work. Thanks for any help.

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  • Oracle vocabulary, what is the mysql/SQL Server equivalent of a database

    - by jeph perro
    Hi, I need some help with vocabulary, I don't use Oracle that often but I am familiar with MySQL and SQL Server. I have an application I need to upgrade and migrate, and part of the procedure to do that involves exporting to an XML file, allowing the installer to create new database tables, then import to the new database tables from the XML file. In Oracle, my database connection specifies a username, password, and an SID. Let's call the SID, "COMPANY-APPS". This SID contains tables belonging to several applications, each of which connects with a different user ( "WIKIUSER", "BUGUSER", "TIMETRACKERUSER" ). My question is: Can I re-use the same user to create the new tables ( with the same names ). In MySQL or SQL Server, I would create a new database and grant my user privileges to create tables in it. OR, do I need to create a new database user for my upgraded tables?

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  • libclntsh.so.11.1: cannot open shared object file.

    - by zhangzhong
    I want to schedule a task on linux by icrontab, and the task is written in python and have to import cx_Oracle module, so I export ORACLE_HOME and LD_LIBRARY_PATH in .bash_profile, but it raise the error: libclntsh.so.11.1: cannot open shared object file. Since it is ok to run the task by issue the command in shell like python a.py # ok I change the task in icrontab into a shell script which invoke my python script, but the exception recurred? # the shell script scheduled in icrontab #! bash python a.py Could you help how to do with it?

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  • Separating Strings from a CSV File in SSIS 2008

    - by David Stein
    I have data which resembles the following: "D.STEIN","DS","01","ALTRES","TTTTTTFFTT" "D.STEIN","DS","01","APCASH","TTTTTTFFTT" "D.STEIN","DS","01","APINH","TTTTTTFFTT" "D.STEIN","DS","01","APINV","TTTTTTFFTT" "D.STEIN","DS","01","APMISC","TTTTTTFFTT" "D.STEIN","DS","01","APPCHK","TTTTTTFFTT" "D.STEIN","DS","01","APWLNK","TTTTTTFFTT" "D.STEIN","DS","01","ARCOM","TTTTTTFFTT" "D.STEIN","DS","01","ARINV","TTTTTTFFTT" I need to break out the final string into separate columns for import into a SQL Table, one letter into each field. Therefore, "TTTTTTFFTT" will be broken out into 10 separate fields each with a single bit value. I've used a Flat File Source Editor to load the data. How do I accomplish the split?

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  • Python: unix socket -> broken pipe

    - by Heinrich Schmetterling
    I'm trying to get Python socket working as an alternative to calling the command line socat. This socat command works fine: echo 'cmd' | sudo socat stdio <path-to-socket> but when I run this python code, I get an error: >>> import socket >>> s = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM) >>> s.connect(<path-to-socket>) >>> s.send('cmd') Traceback (most recent call last): File "<stdin>", line 1, in <module> socket.error: (32, 'Broken pipe') Any ideas what the issue is? Thanks.

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  • What happens when I load an assembly?

    - by Baddie
    In my ASP.NET MVC application, I have the following setup: <runtime> <assemblyBinding xmlns="urn:schemas-microsoft-com:asm.v1"> <probing privatePath="bin;extras"/> I have referenced assemblies located in the extras folder in the views and they have worked perfectly (using <%@ Import Namespace="myNameSpace" %>). My questions What happens when that line is called? Where is the assembly loaded? Why is it that I can't overwrite the assembly located in the extras folder that contains myNameSpace with a newer version? (I get an error saying that the assembly is "open" in another program) Is there a way to overwrite the assembly with a newer version without having the application restart?

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  • Python hashable dicts

    - by TokenMacGuy
    As an exercise, and mostly for my own amusement, I'm implementing a backtracking packrat parser. The inspiration for this is i'd like to have a better idea about how hygenic macros would work in an algol-like language (as apposed to the syntax free lisp dialects you normally find them in). Because of this, different passes through the input might see different grammars, so cached parse results are invalid, unless I also store the current version of the grammar along with the cached parse results. (EDIT: a consequence of this use of key-value collections is that they should be immutable, but I don't intend to expose the interface to allow them to be changed, so either mutable or immutable collections are fine) The problem is that python dicts cannot appear as keys to other dicts. Even using a tuple (as I'd be doing anyways) doesn't help. >>> cache = {} >>> rule = {"foo":"bar"} >>> cache[(rule, "baz")] = "quux" Traceback (most recent call last): File "<stdin>", line 1, in <module> TypeError: unhashable type: 'dict' >>> I guess it has to be tuples all the way down. Now the python standard library provides approximately what i'd need, collections.namedtuple has a very different syntax, but can be used as a key. continuing from above session: >>> from collections import namedtuple >>> Rule = namedtuple("Rule",rule.keys()) >>> cache[(Rule(**rule), "baz")] = "quux" >>> cache {(Rule(foo='bar'), 'baz'): 'quux'} Ok. But I have to make a class for each possible combination of keys in the rule I would want to use, which isn't so bad, because each parse rule knows exactly what parameters it uses, so that class can be defined at the same time as the function that parses the rule. But combining the rules together is much more dynamic. In particular, I'd like a simple way to have rules override other rules, but collections.namedtuple has no analogue to dict.update(). Edit: An additional problem with namedtuples is that they are strictly positional. Two tuples that look like they should be different can in fact be the same: >>> you = namedtuple("foo",["bar","baz"]) >>> me = namedtuple("foo",["bar","quux"]) >>> you(bar=1,baz=2) == me(bar=1,quux=2) True >>> bob = namedtuple("foo",["baz","bar"]) >>> you(bar=1,baz=2) == bob(bar=1,baz=2) False tl'dr: How do I get dicts that can be used as keys to other dicts? Having hacked a bit on the answers, here's the more complete solution I'm using. Note that this does a bit extra work to make the resulting dicts vaguely immutable for practical purposes. Of course it's still quite easy to hack around it by calling dict.__setitem__(instance, key, value) but we're all adults here. class hashdict(dict): """ hashable dict implementation, suitable for use as a key into other dicts. >>> h1 = hashdict({"apples": 1, "bananas":2}) >>> h2 = hashdict({"bananas": 3, "mangoes": 5}) >>> h1+h2 hashdict(apples=1, bananas=3, mangoes=5) >>> d1 = {} >>> d1[h1] = "salad" >>> d1[h1] 'salad' >>> d1[h2] Traceback (most recent call last): ... KeyError: hashdict(bananas=3, mangoes=5) based on answers from http://stackoverflow.com/questions/1151658/python-hashable-dicts """ def __key(self): return tuple(sorted(self.items())) def __repr__(self): return "{0}({1})".format(self.__class__.__name__, ", ".join("{0}={1}".format( str(i[0]),repr(i[1])) for i in self.__key())) def __hash__(self): return hash(self.__key()) def __setitem__(self, key, value): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def __delitem__(self, key): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def clear(self): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def pop(self, *args, **kwargs): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def popitem(self, *args, **kwargs): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def setdefault(self, *args, **kwargs): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def update(self, *args, **kwargs): raise TypeError("{0} does not support item assignment" .format(self.__class__.__name__)) def __add__(self, right): result = hashdict(self) dict.update(result, right) return result if __name__ == "__main__": import doctest doctest.testmod()

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  • CGPDFContextCreateWithURL not correctly creating context

    - by mjdth
    Using the following code, the ctx is not correctly being created. It remains nil: #import <QuartzCore/QuartzCore.h> @implementation UIView(PDFWritingAdditions) - (void)renderInPDFFile:(NSString*)path { CGRect mediaBox = self.bounds; CGContextRef ctx = CGPDFContextCreateWithURL((CFURLRef)[NSURL URLWithString:path], &mediaBox, NULL); CGPDFContextBeginPage(ctx, NULL); CGContextScaleCTM(ctx, 1, -1); CGContextTranslateCTM(ctx, 0, -mediaBox.size.height); [self.layer renderInContext:ctx]; CGPDFContextEndPage(ctx); CFRelease(ctx); } @end In the console it shows: <Error>: CGPDFContextCreate: failed to create PDF context delegate. I've tried several different paths so I'm fairly certain that is not the problem. Thanks for any advice!

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  • How can I prompt for input using Selenium/Webdriver and use the result?

    - by Tempus
    I would like to allow for user input and make some decisions based on it. If I do this: driver.execute_script("prompt('Enter smth','smth')") I get a nice prompt, but I cannot use it's value. Is there any way of showing an input box to the user, and use the value typed there? EDIT: This is my script: from selenium.webdriver import Firefox if __name__ == "__main__": driver = Firefox() driver.execute_script("window.promptResponse=prompt('Enter smth','smth')") a = driver.execute_script("var win = this.browserbot.getUserWindow(); return win.promptResponse") print "got back %s" % a And this exits with the following exception: a = driver.execute_script("var win = this.browserbot.getUserWindow(); return win.promptResponse") File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\webdriver.py", line 385, in ex ecute_script {'script': script, 'args':converted_args})['value'] File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\webdriver.py", line 153, in ex ecute self.error_handler.check_response(response) File "c:\python26\lib\site-packages\selenium-2.12.1-py2.6.egg\selenium\webdriver\remote\errorhandler.py", line 110, in check_response if 'message' in value: TypeError: argument of type 'NoneType' is not iterable What am I not doing right?

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  • Is there a standard site structure format?

    - by artlung
    Is there a standard site structure format? The use of this would be for export and import into a CMS or framework to define the urls, content, metadata for a website. Something tool agnostic would be the goal. JSON, YAML, XML, whatever. Maybe something like: { 'baseurl': 'http://example.com', 'site': [ {'slug': '/', 'title': 'ExampleCo. Inc.'}, {'slug': '/about', 'title': 'About Our Company'}, {'slug': '/services', 'title': 'Our Services'}, {'slug': '/products', 'title': 'Products'}, {'slug': '/products/purchase', 'title': 'Purchase Products Now'}, {'slug': '/products/downloads', 'title': 'Downloads'}, {'slug': '/contact', 'title': 'Contact Us'} ] } My thinking is that it would allow you to quickly populate a content management system or framework with a generic site navigational structure. Does something like this exist?

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  • sys.stdout not reassigning to sys.__stdout__

    - by Vince
    I'm pretty new to Python so I am still just learning the language. One of the things I came across was reassigning sys.stdout to change the default output of print. So I wrote this as a test: import sys sys.stdout = open('log.txt','a') print('hey') sys.stdout.close() sys.stdout = sys.__stdout__ print('hi') Now the string 'hi' is not written to the file but it does not show in the default output either. When I assign some other variable to sys.stdout in the beginning and change it back it works, but I'm just wondering why its not changing back the first time.

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  • M2Eclipse and EAR projects on Weblogic

    - by Steve
    How can I import a maven EAR project into Eclipse 3.4, and be able to use the IDE (WTP) to deploy the ear successfully to Weblogic (9.2)? The main issue is that the dependent jars are not being included in the ear (under APP-INF/lib) when it gets deployed through the IDE. When I build from command line, the ear is exactly how I want it. I am using the APP-INF/lib configuration for the ear plugin, and have included the jarModule sections for all the required jars. When editing the eclipse EAR project's Java EE components, all the jars are listed, but not in the APP-INF/lib. Only when I open a dependent jar project do those specific jars get set under that subfolder. All the 3rd party jars are showing they will end up in the wrong place. If you need more info, just let me know. Thanks!

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  • gethostname() returns accurate hostname, bind() doesn't like it

    - by user2072848
    Doing a python socket tutorial, entire codebase is as follows import socket as so s = so.socket() host = so.gethostname() port = 12345 s.bind((host, port)) s.listen(5) while True: c, addr = s.accept() print 'Got connection from', addr c.send('Thank you for connecting') c.close() and error message: Traceback (most recent call last): File "server.py", line 13, in <module> s.bind((host, port)) File "/Users/solid*name*/anaconda/lib/python2.7/socket.py", line 224, in meth return getattr(self._sock,name)(*args) socket.gaierror: [Errno 8] nodename nor servname provided, or not known Printing hostname gives me super*name* Which is, in fact, my computer's hostname.

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  • How can I connect to a mail server using SMTP over SSL using Python?

    - by jakecar
    Hello, So I have been having a hard time sending email from my school's email address. It is SSL and I could only find this code online by Matt Butcher that works with SSL: import smtplib, socket version = "1.00" all = ['SMTPSSLException', 'SMTP_SSL'] SSMTP_PORT = 465 class SMTPSSLException(smtplib.SMTPException): """Base class for exceptions resulting from SSL negotiation.""" class SMTP_SSL (smtplib.SMTP): """This class provides SSL access to an SMTP server. SMTP over SSL typical listens on port 465. Unlike StartTLS, SMTP over SSL makes an SSL connection before doing a helo/ehlo. All transactions, then, are done over an encrypted channel. This class is a simple subclass of the smtplib.SMTP class that comes with Python. It overrides the connect() method to use an SSL socket, and it overrides the starttles() function to throw an error (you can't do starttls within an SSL session). """ certfile = None keyfile = None def __init__(self, host='', port=0, local_hostname=None, keyfile=None, certfile=None): """Initialize a new SSL SMTP object. If specified, `host' is the name of the remote host to which this object will connect. If specified, `port' specifies the port (on `host') to which this object will connect. `local_hostname' is the name of the localhost. By default, the value of socket.getfqdn() is used. An SMTPConnectError is raised if the SMTP host does not respond correctly. An SMTPSSLError is raised if SSL negotiation fails. Warning: This object uses socket.ssl(), which does not do client-side verification of the server's cert. """ self.certfile = certfile self.keyfile = keyfile smtplib.SMTP.__init__(self, host, port, local_hostname) def connect(self, host='localhost', port=0): """Connect to an SMTP server using SSL. `host' is localhost by default. Port will be set to 465 (the default SSL SMTP port) if no port is specified. If the host name ends with a colon (`:') followed by a number, that suffix will be stripped off and the number interpreted as the port number to use. This will override the `port' parameter. Note: This method is automatically invoked by __init__, if a host is specified during instantiation. """ # MB: Most of this (Except for the socket connection code) is from # the SMTP.connect() method. I changed only the bare minimum for the # sake of compatibility. if not port and (host.find(':') == host.rfind(':')): i = host.rfind(':') if i >= 0: host, port = host[:i], host[i+1:] try: port = int(port) except ValueError: raise socket.error, "nonnumeric port" if not port: port = SSMTP_PORT if self.debuglevel > 0: print>>stderr, 'connect:', (host, port) msg = "getaddrinfo returns an empty list" self.sock = None for res in socket.getaddrinfo(host, port, 0, socket.SOCK_STREAM): af, socktype, proto, canonname, sa = res try: self.sock = socket.socket(af, socktype, proto) if self.debuglevel > 0: print>>stderr, 'connect:', (host, port) self.sock.connect(sa) # MB: Make the SSL connection. sslobj = socket.ssl(self.sock, self.keyfile, self.certfile) except socket.error, msg: if self.debuglevel > 0: print>>stderr, 'connect fail:', (host, port) if self.sock: self.sock.close() self.sock = None continue break if not self.sock: raise socket.error, msg # MB: Now set up fake socket and fake file classes. # Thanks to the design of smtplib, this is all we need to do # to get SSL working with all other methods. self.sock = smtplib.SSLFakeSocket(self.sock, sslobj) self.file = smtplib.SSLFakeFile(sslobj); (code, msg) = self.getreply() if self.debuglevel > 0: print>>stderr, "connect:", msg return (code, msg) def setkeyfile(self, keyfile): """Set the absolute path to a file containing a private key. This method will only be effective if it is called before connect(). This key will be used to make the SSL connection.""" self.keyfile = keyfile def setcertfile(self, certfile): """Set the absolute path to a file containing a x.509 certificate. This method will only be effective if it is called before connect(). This certificate will be used to make the SSL connection.""" self.certfile = certfile def starttls(): """Raises an exception. You cannot do StartTLS inside of an ssl session. Calling starttls() will return an SMTPSSLException""" raise SMTPSSLException, "Cannot perform StartTLS within SSL session." And then my code: import ssmtplib conn = ssmtplib.SMTP_SSL('HOST') conn.login('USERNAME','PW') conn.ehlo() conn.sendmail('FROM_EMAIL', 'TO_EMAIL', "MESSAGE") conn.close() And got this error: /Users/Jake/Desktop/Beth's Program/ssmtplib.py:116: DeprecationWarning: socket.ssl() is deprecated. Use ssl.wrap_socket() instead. sslobj = socket.ssl(self.sock, self.keyfile, self.certfile) Traceback (most recent call last): File "emailer.py", line 5, in conn = ssmtplib.SMTP_SSL('HOST') File "/Users/Jake/Desktop/Beth's Program/ssmtplib.py", line 79, in init smtplib.SMTP.init(self, host, port, local_hostname) File "/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/smtplib.py", line 239, in init (code, msg) = self.connect(host, port) File "/Users/Jake/Desktop/Beth's Program/ssmtplib.py", line 131, in connect self.sock = smtplib.SSLFakeSocket(self.sock, sslobj) AttributeError: 'module' object has no attribute 'SSLFakeSocket' Thank you!

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  • Jinja2 returns "None" string for Google App Engine models

    - by Brian M. Hunt
    Google App Engine models, likeso: from google.appengine.ext.db import Model class M(): name = db.StringProperty() Then in a Jinja2 template called from a Django view with an in instance of M passed in as m: The name of this M is {{ m.name }}. When m is initialized without name being set, the following is printed: The name of this M is None. The preferable and expected output (and the output when using Django templates) would be/is: The name of this M is . Do you know why this is happening, and how to get the preferred & expected output?

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  • Trouble using eval() with cython

    - by Peter Stewart
    I was trying to speed up some code, and then I tried compiling a class and a function using cython and WOW! I havn't measured it yet but it looks at least 10x faster. I first looked at cython just two days ago, I'm very impressed! However, I can't get eval() to work. def thefirst(int a): d = eval('1+2+a') return d I compile this to module1.pyd file and call it with the python file: from module1 import thefirst x = thefirst(2) print x This returns: NameError: name 'a' is not defined. All help is appreciated.

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  • Integrate Weld CDI into a JSF 1.2 EJB Application on jboss 6 AS

    - by ich-bin-drin
    Hi, since two evenings i am trying to integrate weld CDI into an EJB 3.1 Application with JSF 1.2. I simply tried to call a with @Named annotated controller in an JSF page. The problem is, that no exception is thrown, when i deploy the project and also no exception is thrown when i call the page. The simple example contains only: The Controller: import javax.inject.Named; @Named public class HelloWorldController { public HelloWorldController(){ System.out.println("Hello World!"); } public String getMessage() { return "Hello Weld World"; } } And it's call: <h1><h:outputText value="#{helloWorldController.message}" /></h1> THX

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  • Accessing Linq Values in ViewData

    - by Jemes
    I'm having trouble accessing the id, area and theme values in my ViewData. They are being set in my action filter but when I get to the Site.Master I don't have access to them. Any help or advice would be great. ActionFilter public override void OnActionExecuting(ActionExecutingContext filterContext) { int SectionID = Convert.ToInt32(filterContext.RouteData.Values["Section_ID"]); int CourseID = Convert.ToInt32(filterContext.RouteData.Values["Course_ID"]); if (CourseID == 0) { filterContext.Controller.ViewData["Styles"] = (from m in _dataContext.Styles where m.Area_ID == SectionID select new {theme = m.Area_FolderName }).ToList(); } else { filterContext.Controller.ViewData["Styles"] = (from m in _dataContext.Styles where m.Course_ID == CourseID select new { theme = m.Course_FolderName }).ToList(); } } } Site.Master <%@ Master Language="C#" Inherits="System.Web.Mvc.ViewMasterPage" % <%@ Import Namespace="Website.Models" % <% foreach (var c in (IEnumerable<Styles>)ViewData["Styles"]) { Response.Write(c.Theme); }%>

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  • Facebook publish HTTP Error 400 : bad request

    - by Abhishek
    Hey I am trying to publish a score to Facebook through python's urllib2 library. import urllib2,urllib url = "https://graph.facebook.com/USER_ID/scores" data = {} data['score']=SCORE data['access_token']='APP_ACCESS_TOKEN' data_encode = urllib.urlencode(data) request = urllib2.Request(url, data_encode) response = urllib2.urlopen(request) responseAsString = response.read() I am getting this error: response = urllib2.urlopen(request) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 124, in urlopen return _opener.open(url, data, timeout) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 389, in open response = meth(req, response) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 502, in http_response 'http', request, response, code, msg, hdrs) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 427, in error return self._call_chain(*args) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 361, in _call_chain result = func(*args) File "/System/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/urllib2.py", line 510, in http_error_default raise HTTPError(req.get_full_url(), code, msg, hdrs, fp) urllib2.HTTPError: HTTP Error 400: Bad Request Not sure if this is relating to Facebook's Open Graph or improper urllib2 API use.

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  • django 'if' statement improperly formatted

    - by Zayatzz
    Im getting strangest error in django so far: 'if' statement improperly formatted Template that raises the error is this: {% if diff >= 0 %} <span class="pos">+{{ diff }} {% else %} <span class="neg">-{{ diff }} {% endif %} </span> <span>{{ a }}</span> view that has a and diff in context is this: def add(request, kaart_id): if request.is_ajax() and request.method == 'POST': x = Kaart.objects.get(id=kaart_id) x.pos += 1 x.save x = Kaart.objects.get(id=kaart_id) from django.utils import simplejson diff = x.pos - x.neg a = "(+1)" context = { 'diff':diff, 'a':a } return render_to_response('sum.html', context, context_instance=RequestContext(request)) It does not matter what equation i use in if, , =, ==.. they all raise the same error. and as far as i can tell its all by the book: http://docs.djangoproject.com/en/dev/ref/templates/builtins/#id5 Alan.

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  • BioPython: extracting sequence IDs from a Blast output file

    - by Jon
    Hi, I have a BLAST output file in XML format. It is 22 query sequences with 50 hits reported from each sequence. And I want to extract all the 50x22 hits. This is the code I currently have, but it only extracts the 50 hits from the first query. from Bio.Blast import NCBIXM blast_records = NCBIXML.parse(result_handle) blast_record = blast_records.next() save_file = open("/Users/jonbra/Desktop/my_fasta_seq.fasta", 'w') for alignment in blast_record.alignments: for hsp in alignment.hsps: save_file.write('>%s\n' % (alignment.title,)) save_file.close() Somebody have any suggestions as to extract all the hits? I guess I have to use something else than alignments. Hope this was clear. Thanks! Jon

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  • bad request error 400 while using python requests.post function

    - by Toussah
    I'm trying to make a simple post request via the requests library of Python and I get a bad request error (400) while my url is supposedly correct since I can use it to perform a get. I'm very new in REST requests, I read many tutorials and documentation but I guess there are still things I don't get so my error could be basic. Maybe a lack of understanding on the type of url I'm supposed to send via POST. Here my code : import requests v_username = "username" v_password = "password" v_headers = {'content-type':'application/rdf+xml'} url = 'https://my.url' params = {'param': 'val_param'} payload = {'data': 'my_data'} r = requests.post(url, params = params, auth=(v_username, v_password), data=payload, headers=v_headers, verify=False) print r I used the example of the requests documentation.

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  • ExternalInterface.addCallback doesn't work on firefox??

    - by dome
    i'm trying to call a method inside a flash movie from js, every time the mouse leaves the "div". It works on Internet Explorer, but not in firefox. any ideas? here is the html script: <script type="text/javascript"> window.onload = function(e){ init(); } function init(){ document.getElementById('div').onmouseout = function(e) { method(); } } function method(){ flashid.anothermethod(); } </script> and the flash script: import flash.external.ExternalInterface; function outdiv(){ //do something; } ExternalInterface.addCallback('anothermethod', outdiv); Any ideas what's wrong?

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  • Creating a web-service client directly from the source

    - by ben
    Hi, I am trying to generate the WS client jar directly from the @Webservice class(es). Let's take this example : package com.example.maven.jaxws.helloservice; import javax.jws.WebService; @WebService public class Hello { public String sayHello(String param) { ; return "Hello " + param; } } I can generate a war file and use glassfish to serve this webservice, and from there I can use the glassfish WSDL URL to generate the client sources. What I am trying to do is to skip the glassfish part. From my maven project defining the webservice, I would like to use the jaxws-maven-plugin to create the client classes but I cannot find any way to specify the actual URL of the webservice. It should be possible right? @see also http://stackoverflow.com/questions/2097789/creating-a-web-service-client-with-a-known-but-inaccessible-wsdl

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