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• AWK :Extract columns from file: Rows have variable columns

  - by pulikot1

  I have a text file in the following format. Each row has variable number of columns. File: gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein % 1 0.0 2296 100.0 gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta % 1 0.0 1964 100.0 The resulting file should look like the following: gi|269201691|ref|YP_003280960.1| gi|57651109|ref|YP_184912.1| % 1 0.0 2296 100.0 gi|269201694|ref|YP_003280963.1| gi|57651112|ref|YP_184915.1| % 1 0.0 1767 100.0 The code below helps find columns in each row with the pattern 'ref'. awk '{for (i=1;i<=NF;i++) if ($i ~ /ref/) print $i }' Any ideas on how to do the same?

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• PRG in ASP.NET MVC but with object data transferred to the redirected action

  - by mare

  Following Post-Redirect-Get pattern as described in various spots but maybe in most detail here by Stephen Walter I want to use RedirectToAction but it does not accept a parameter for sending object to it. I can only send route values either as an object or as an RouteValueDictionary. So currently I send object ID and type and pull the object out of the datastore again in the action to which I redirected (like Results). // redirect to confirm view return RedirectToAction("ChangeSuccess", "Redirect", new { slug = tabgroup.Slug, contentType = tabgroup.ContentType }); But I would like to send an object there because I already have it in my updating controller action so I don't need to pull it out again. Is that possible somehow?

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• DTO or Domain Model Object in the View Layer?

  - by smayers81

  I know this is probably an age-old question, but what is the better practice? Using a domain model object throughout all layers of your application, and even binding values directly to them on the JSP (I'm using JSF). Or convert a domain model object into a DTO in the DAO or Service layer and send a lightweight DTO to the presentation layer. I have been told it makes no sense to use DTOs because changes to the database will result in changes to all your DTOs whereas using Model Objects everywhere will just require changes to the affected model object. However, the ease of use and the lightweight nature of DTOs seems to outweigh that. I should note that my app uses Hibernate Model Objects AND uses its own custom-created model objects (meaning not bound to any DB session, always detached). Is either of the above scenarios more beneficial to a strict Model Object pattern? Using Hibernate has been a huge PITA with regards to things like Lazy Initialization Exceptions.

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• jQuery ajax in DotNetNuke preserving user authentication

  - by Michael Bradley

  I want to use jQuery's ajax functionality in a DotNetNuke module I'm developing. I want the ajax call to be authenticated via DNN's membership functionality. I want the ajax response as json. How can I do this? I've looked at IWeb and IWebCF -- it's not clear to me from much Googleing and scanning the forums whether these modules would allow me to create a web service that would accept a simple post request and return json (seems like they want to do it the ASP.NET AJAX way with a generated proxy, I'd prefer to just use jQuery's AJAX call functionality). Seems you can't create a simple webmethod in a DNN module (since they are developed as User Controls (.ascx)). I could deploy an .asmx file with module, but that won't leverage DNN's authentication system. Ideas? I'm currently developing against DNN 4.9.5

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• String replacement problem.

  - by fastcodejava

  I want to provide some template for a code generator I am developing. A typical pattern for class is : public ${class_type} ${class_name} extends ${super_class} implements ${interfaces} { ${class_body} } Problem is if super_class is blank or interfaces. I replace extends ${super_class} with empty string. But I get extra spaces. So a class with no super_class and interfaces end up like : public class Foo { //see the extra spaces before {? ${class_body} } I know I can replace multiple spaces with single, but is there any better approach?

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• Pyramid.security: Is getting user info from a database with unauthenticated_userid(request) really secure?

  - by yourfriendzak

  I'm trying to make an accesible cache of user data using Pyramid doc's "Making A “User Object” Available as a Request Attribute" example. They're using this code to return a user object to set_request_property: from pyramid.security import unauthenticated_userid def get_user(request): # the below line is just an example, use your own method of # accessing a database connection here (this could even be another # request property such as request.db, implemented using this same # pattern). dbconn = request.registry.settings['dbconn'] userid = unauthenticated_userid(request) if userid is not None: # this should return None if the user doesn't exist # in the database return dbconn['users'].query({'id':userid}) I don't understand why they're using unauthenticated_userid(request) to lookup user info from the database...isn't that insecure? That means that user might not be logged in, so why are you using that ID to get there private info from the database? Shouldn't userid = authenticated_userid(request) be used instead to make sure the user is logged in? What's the advantage of using unauthenticated_userid(request)? Please help me understand what's going on here.

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• Using spring:nestedPath tag

  - by Ravi

  Hello All, I have this code, I know I'm missing something but don't know what. It would be great if you help me out. I'm new to Spring MVC. I'm trying out a simple Login application in Spring MVC. This is my web.xml <?xml version="1.0" encoding="UTF-8"?> <web-app version="2.5" xmlns="http://java.sun.com/xml/ns/javaee" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee http://java.sun.com/xml/ns/javaee/web-app_2_5.xsd"> <listener> <listener-class> org.springframework.web.context.ContextLoaderListener </listener-class> </listener> <servlet> <servlet-name>springapp</servlet-name> <servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class> </servlet> <servlet-mapping> <servlet-name>springapp</servlet-name> <url-pattern>/app/*</url-pattern> </servlet-mapping> <session-config> <session-timeout> 30 </session-timeout> </session-config> <welcome-file-list> <welcome-file>index.jsp</welcome-file> </welcome-file-list> here is my springapp-servlet.xml file <?xml version="1.0" encoding="UTF-8"?> <beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-2.5.xsd"> <bean name="/login" class="springapp.web.LoginController"/> <bean id="viewResolver" class="org.springframework.web.servlet.view.InternalResourceViewResolver"> <property name="prefix" value="/WEB-INF/jsp/"></property> <property name="suffix" value=".jsp"></property> </bean> This is my applicationContext.xml file <?xml version="1.0" encoding="UTF-8"?> <!DOCTYPE beans PUBLIC "-//SPRING//DTD BEAN//EN" "http://www.springframework.org/dtd/spring-beans.dtd"> <beans> <bean id="employee" class="springapp.domain.Employee" /> </beans> Here is my LoginController.java file package springapp.web; import org.springframework.web.servlet.ModelAndView; import org.springframework.web.servlet.mvc.SimpleFormController; import springapp.domain.Employee; public class LoginController extends SimpleFormController{ public LoginController(){ setCommandName("loginEmployee"); setCommandClass(Employee.class); setFormView("login"); setSuccessView("welcome"); } @Override protected ModelAndView onSubmit(Object command) throws Exception { return super.onSubmit(command); } } And finally my login.jsp file <%@ taglib uri="http://www.springframework.org/tags" prefix="spring" %> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd"> <html xmlns="http://www.w3.org/1999/xhtml"> <head> <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> <title>Timesheet Login</title> </head> <body> <spring:nestedPath path="employee"> <form action="" method="POST"> <table width="200" border="1" align="center" cellpadding="10" cellspacing="0"> <tr> <td>Username:</td> <td> <spring:bind path="userName"> <input type="text" name="${status.expression}" id="${status.value}" /> </spring:bind> </td> </tr> <tr> <td>Password</td> <td> <spring:bind path="password"> <input type="password" name="${status.expression}" id="${status.value}" /> </spring:bind> </td> </tr> <tr> <td colspan="2"><input type="submit" value="Login" /></td> </tr> </table> </form> </spring:nestedPath> </body> </html> But when I try to run the code I get this error javax.servlet.ServletException: javax.servlet.jsp.JspTagException: Neither BindingResult nor plain target object for bean name 'employee' available as request attribute

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• Pulling and pushing between two google code repositories

  - by Kim L

  I'll start by quoting google's blog Project owners can now create multiple repositories for their project, and they can choose to make any of those new repositories a clone of any of the project's other repositories. These project clones share the same commit access permissions as the original project and make it easier for project members to work together on new features. A common pattern in the Mercurial world is to place each "official" branch into a separate repository with naming conventions like "project-crew", "project-stable", and so on. I've done exactly this. I have my default repository and then I've cloned that repository to a repo named "dev". I intend to use the default repository as my stable repo and then the dev repo as my primary development repo. Now I'm just wondering how on earth I should go about to pull and push between the default and the dev repositories?

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• Base class for windows service

  - by user187020

  My new project has a design in which there are number windows services for performing different tasks. I have been given a task to create base class from which all of the windows service will inherit. This base class will perform common functions like creating instances of other windows services by iterating through the config file (may be like Activator.CreateInstance), do event logging on onStart, onStop etc. and may contain some more functionality. Before I start developing stuff, wondering if there is any pattern already in place or someone has good understanding of how to implement this kind of functionality. Any help appreciated.

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• Building big, immutable objects without using constructors having long parameter lists

  - by Malax

  Hi StackOverflow! I have some big (more than 3 fields) Objects which can and should be immutable. Every time I run into that case i tend to create constructor abominations with long parameter lists. It doesn't feel right, is hard to use and readability suffers. It is even worse if the fields are some sort of collection type like lists. A simple addSibling(S s) would ease the object creation so much but renders the object mutable. What do you guys use in such cases? I'm on Scala and Java, but i think the problem is language agnostic as long as the language is object oriented. Solutions I can think of: "Constructor abominations with long parameter lists" The Builder Pattern Thanks for your input!

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• Zend RegEx Validator error message issue

  - by Mallika Iyer

  Hello, I'm validating a text field in my form as follows: $name = new Zend_Form_Element_Text('name'); $name->setLabel('First Name:') ->setRequired(true) ->addFilter(new Zend_Filter_StringTrim()) ->addValidator('regex',true,array('/^[(a-zA-Z0-9)]+$/')) ->addErrorMessage('Please enter a valid first name'); What I'm trying to accomplish is - how can i display a meaningful error message? Eg: If first name is 'XYZ-', how can i display '- is not allowed in first name.' Is there a way I can access what character the regex is failing for? Would you recommend something else altogether? I thought about writing a custom validator but the regex is pretty simple, so I don't see the point. I couldn't find a decent documentation for the zend 'regex' validator anywhere. If I don't override the default error message, I simple get something like : ';;;hhbhbhb' does not match against pattern '/^[(a-zA-Z0-9)]+$/' - which I obviously don't want to display to the user. I'd appreciate your inputs.

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• How to unset delegate on UIView setAnimationDelegate: call?

  - by morticae

  I am receiving crash reports that appear to be from a UIView animation calling a delegate that has been dealloced. Thread 0 Crashed: 0 libobjc.A.dylib 0x334776f6 objc_msgSend + 18 1 UIKit 0x31c566c4 -[UIViewAnimationState sendDelegateAnimationDidStop:finished:] 2 UIKit 0x31c565d2 -[UIViewAnimationState animationDidStop:finished:] 3 QuartzCore 0x30045a26 run_animation_callbacks I am setting the current view controller as the delegate for animations using the following pattern: [UIView beginAnimations:nil context:NULL]; [UIView setAnimationBeginsFromCurrentState:YES]; [UIView setAnimationDuration:0.5]; [UIView setAnimationDelegate:self]; ... [UIView commitAnimations]; My question is, how do I set that delegate reference to nil in my dealloc method? Is there some way to retain a reference to an animation? Or fetch animations in progress?

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• CALayer drawInContext vs addSublayer

  - by Michael

  How can I use both of these in the same UIView correctly? I have one custom subclassed CALayer in which I draw a pattern within drawInContext I have a another in which I set an overlay PNG image as the contents. I have a third which is just a background. How do I overlay all 3 of these items? [self.layer addSublayer:bottomLayer]; // this line is the problem [squaresLayer drawInContext:viewContext]; [self.layer addSublayer:imgLayer]; The other 2 by themselves draw correctly if I do them in that order. No matter where I try and put bottomLayer, it always prevents squaresLayer from drawing. The reason I need 3 layers is I intend to animate the colors in the background and custom layers. The top layer is just a graphical overlay.

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• Postgresql - one database for everyone, or one-database per customer

  - by user337876

  I'm working on a web-based business application where each customer will need to have their own data (think basecamphq.com type model) For scalability and ease-of-upgrades, I'd prefer to have a single database where each customer gets a filtered version of the data. The problem is how to guarantee that they stay sandboxed to their own data. Trying to enforce it in code seems like a disaster waiting to happen. I know Oracle has a way to append a where clause to every query based on a login id, but does Postgresql have anything similar? If not, is there a different design pattern I could use (like creating a view of each table for each customer that filters)? Worse case scenario, what is the performance/memory overhead of having 1000 100M databases vs having a single 1Tb database? I will need to provide backup/restore functionality on a per-customer basis which is dead-simple on a single database but quite a bit trickier if they are sharing the database with other customers.

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• Use a web service with https and client certificate on WindowsForm

  - by Xstahef

  Hi, I need to connect to a provider's web service. He give me a certificate to access it but I have a security problem. I have done these following steps : Add certificate to personal store (on IE & Firefox) Generate a proxy with the remote wsdl (no problem) Use this code to call a method : `using (service1.MessagesService m = new service1.MessagesService()) { X509Certificate crt = new X509Certificate(@"C:\OpenSSL\bin\thecert.p12",string.Empty); m.ClientCertificates.Add(crt); var result = m.AuthoriseTransaction(aut); this.textBox1.AppendText(result.id.ToString()); }` I have the following error : The underlying connection was closed: Could not establish trust relationship for the channel SSL / TLS. Thanks for your help

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• ASP.NET MVC Data passing

  - by user295541

  Hi, I need a good example or guideline which could give me a pattern for data passing between view and partial view. For example I have a view which contains several partial views. I refresh these partial view by ajax. So I need to pass data among view and its partial views. The best way would be if I could pass data without using Temp data dictionary. Anybody know a good article about this? l.

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• Advantages of Thread pooling in embedded systems

  - by Microkernel

  I am looking at the advantages of threadpooling design pattern in Embedded systems. I have listed few advantages, please go through them, comment and please suggest any other possible advantages that I am missing. Scalability in systems like ucos-2 where there is limit on number of threads. Increasing capability of any task when necessary like Garbage collection (say in normal systems if garbage collection is running under one task, its not possible to speed it up, but in threadpooling we can easily speed it up). Can set limit on the max system load. Please suggest if I am missing anything.

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• How to handle BL cache for multiple web applications?

  - by Eran Betzalel

  I recently received a project that contains multiple web applications with no MVC structure. For starters I've created a library (DLL) that will contain the main Business Logic. The problem is with Caching - If I use the current web context cache object than I might end up with duplicate caching (as the web context will be different for every application). I'm currently thinking about implementing a simple caching mechanism with a singleton pattern that will allow the different web sites (aka different application domains) to share their "caching wisdom". I'd like to know what is the best way to solve this problem.

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• How do you mock a Sealed class?

  - by Brett Veenstra

  Mocking sealed classes can be quite a pain. I currently favor an Adapter pattern to handle this, but something about just keeps feels weird. So, What is the best way you mock sealed classes? Java answers are more than welcome. In fact, I would anticipate that the Java community has been dealing with this longer and has a great deal to offer. But here are some of the .NET opinions: Why Duck Typing Matters for C# Develoepers Creating wrappers for sealed and other types for mocking Unit tests for WCF (and Moq)

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• Sending ExtJS datastore parameter to CI controller

  - by Davi

  Hi all, I'm new to ExtJS and I'm stuck with ExtJS datastore. I'm using ExtJS with CodeIgniter and I want to send ExtJS datastore.load() parameter to my codeigniter's controller to process some query. How can I do that? Here is my ExtJS datastore proxy: var dataProxy = new Ext.data.HttpProxy({ url: 'index.php/cStart/js_listPegawai/', method: 'POST' }); and this is my controller code: var $queryNama = ""; function js_listPegawai() { $this->load->model('MPegawai'); $Pegawai = $this->MPegawai->listPegawai($queryNama); } Thanks for any suggestions..

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• Multiple Windows Forms on one application

  - by Shukhrat Raimov

  I have two windows forms, first is initial and second is invoked when button on the first is pressed. It's two different windows, with different tasks. I programmed for both MVP pattern. But in the Main() I have this: static void Main() { Application.EnableVisualStyles(); Application.SetCompatibleTextRenderingDefault(false); ViewFirst viewFirst = new ViewFirst();//First Form PresenterFirst presenterFirst = new PresenterFirst(viewFirst); Application.Run(viewFirst); } And I Have Second Windows Form: ViewSecond viewSecond = new ViewSecond();//Second Form PresenterSecond presenterSecond = new PresenterSecond(viewSecond); I want to run it in this app as soon as the button on the first is clicked. How could I do this? My button on the first WF is: private void history_button_Click(object sender, EventArgs e) { ViewSecond db = new ViewSecond();//second Form where I have sepparate WF. db.Show(); }

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• Does ActiveRecord make Ruby on Rails code hard to test?

  - by Erik Öjebo

  I've spent most of my time in statically typed languages (primarily C#). I have some bad experiences with the Active Record pattern and unit testing, because of the static methods and the mix of entities and data access code. Since the Ruby community probably is the most test driven of the communities out there, and the Rails ActiveRecord seems popular, there must be some way of combining TDD and ActiveRecord based code in Ruby on Rails. I would guess that the problem goes away in dynamic languages, somehow, but I don't see how. So, what's the trick?

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• Does Windows Azure support the Application Warm-Up module or something similar?

  - by Corey O'Brien

  We have a Web Role that we are hosting in Windows Azure that uses an old ASMX based Web Reference to contact an external system. The Web Reference proxy code is big enough that instantiating it the first time has a significant cost. We'd like to be able to have this run when the Web Role starts instead of on the first request. I know IIS 7.5 has an Application Warm-Up module that would allow us to achieve this, but I'm having trouble figuring out if something similar exists with hosting on Windows Azure. Thanks, Corey

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• Algorithm on trajectory analysis.

  - by Arman

  Hello, I would like to analyse the trajectory data based on given templates. I need to stack the similar trajectories together. The data is a set of coordinates xy,xy,xy and the templates are again the lines defined by the set of control points. I don't know to what direction to go, maybe to Neural Networks or pattern recognition? Could you please advace me page, book or library to start with? kind regards Arman. PS. Is it the right place to ask the question?

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• what perl regex should I use to get value from line

  - by Octopus

  I am trying to capture the cpu usage from the running process. For SunOS, I have below output process,10050,user1,218,59,0,1271M,1260M,sleep,58.9H,0.02%,java here the cpu % is at 11th field if we separate by comma(,). To get this value I am using below regex regex => q/^process,(?:.*?),((?:\d+)\.(?:\d+))%,java$/, but for the linux system I have below output. process,26190,user1,20,0,1236m,43m,6436,S,0.0,1.1,0:00.00,java, here the cpu usage is at 10th column What regex pattern should i use to get this value. Appreciate for any suggestion.

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