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• Are mathamatical Algorithms protected by copyright

  - by analogy

  I wish to implement an algorithm which i read in a journal paper in my software (commercial). I want to know if this is allowed or not. The algorithm in question is described in http://arxiv.org/abs/0709.2938 It is a very simple algorithm and a number of implementations exist in python (http://igraph.sourceforge.net/) and java. One of them is in gpl another which i got from a different researcher and had no license attached. There are significant differences in two implementations, e.g. second one uses threads and multiple cores. It is possible to rewrite/ (not translate) the algorithm. So can I use it in my software or on a server for commercial purpose. Thanks

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• looking for a set union find algorithm

  - by Mig

  I have thousands of lines of 1 to 100 numbers, every line define a group of numbers and a relationship among them. I need to get the sets of related numbers. Little Example: If I have this 7 lines of data T1 T2 T3 T4 T5 T6 T1 T5 T4 T3 T4 I need a not so slow algorith to know that the sets here are: T1 T2 T6 (because T1 is related with T2 in the first line and T1 related with T6 in the line 5) T3 T4 T5 (because T5 is with T4 in line 6 and T3 is with T4 in line 7) but when you have very big sets is painfully slow to do a search of a T(x) in every big set, and do unions of sets... etc. Do you have a hint to do this in a not so brute force manner? I'm trying to do this in python. Thanks

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• Turning A Stacked List into workable data

  - by BoSox

  In Excel I have a list of names that in the cell appear stacked, and I want each name in its own column. I was thinking Python may be a good way to do this? Example: Joe Smith John Hawk Mike Green Lauren Smith One cell will look exactly like that, with each name on its line within the cell but all of the names contained in the cell. I have 50 cells each with 1-20 stacked names and I want to put each name in its own cell on a given row. So, in my example all of those names would occupy the same row but each would have their own column. Any ideas?

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• Bulk get of child entities on Google app engine?

  - by dfrankow

  On Google App Engine in Python, I have a Visit entity that has a parent of Patient. A Patient may have multiple visits. I need to set the most_recent_visit (and some auxiliary visit data) somewhere for later querying, probably in another child entity that Brett Slatkin might call a "relationship index entity." I wish to do so in a bulk style as follows: 1. get 100 Patient keys 2. get all Visits that have any of the Patients from 1 as an ancestor 3. go through the Visits and get the latest for each Patient Is there any way to perform step 2 in a bulk get? I know there is a way to bulk get entities from a list of keys, and there is a way to match a single entity by its ancestor.

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• How do you PEP 8-name a class whose name is an acronym?

  - by Arrieta

  I try to adhere to the style guide for Python code (also known as PEP 8). Accordingly, the preferred way to name a class is using CamelCase: Almost without exception, class names use the CapWords convention. Classes for internal use have a leading underscore in addition. How can I be consistent with PEP 8 if my class name is formed by two acronyms (which in proper English should be capitalized). For instance, if my class name was 'NASA JPL', what would you name it?: class NASAJPL(): # 1 class NASA_JPL(): # 2 class NasaJpl(): # 3 I am using #1, but it looks weird; #3 looks weird too, and #2 seems to violate PEP 8. Thoughts?

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• PyQt4 Need to move DLLs to package root

  - by Xavier

  Hi Guys, I've used the new installers from http://www.riverbankcomputing.co.uk/software/pyqt/download for Python 2.6 x86_64 and I've a small problem importing PyQt4 in one particular application. Here's the traceback: # ERROR : Traceback (most recent call last): # File "<Script Block >", line 2, in <module> # from PyQt4 import QtCore # ImportError: DLL load failed: The specified procedure could not be found. # - [line 2] This might look familiar. Fun thing is that in a previous version of the 3d software it does work (and from a standard command line), but not in the new software version. I inspected the sys.path (within the app) in order to see if this path was there: C:\Python26\Lib\site-packages\PyQt4\bin In both application this path is present. Finally managed to make it works by copying the DLLs from C:\Python26\Lib\site-packages\PyQt4\bin to C:\Python26\Lib\site-packages\PyQt4 Is there any known reason for this? I've a hard time debugging this thing further (making sure everything is 64 bit, path are correct, etc) Thanks for your help

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• match elements from two files, how to write the intended format to a new file

  - by user2489612

  I am trying to update my text file by matching the first column to another updated file's first column, after match it, it will update the old file. Here is my old file: Name Chr Pos ind1 in2 in3 ind4 foot 1 5 aa bb cc ford 3 9 bb cc 00 fake 3 13 dd ee ff fool 1 5 ee ff gg fork 1 3 ff gg ee Here is the new file: Name Chr Pos foot 1 5 fool 2 5 fork 2 6 ford 3 9 fake 3 13 The updated file will be like: Name Chr Pos ind1 in2 in3 ind4 foot 1 5 aa bb cc fool 2 5 ee ff gg fork 2 6 ff gg ee ford 3 9 bb cc 00 fake 3 13 dd ee ff Here is my code: #!/usr/bin/env python import sys inputfile_1 = sys.argv[1] inputfile_2 = sys.argv[2] outputfile = sys.argv[3] inputfile1 = open(inputfile_1, 'r') inputfile2 = open(inputfile_2, 'r') outputfile = open(outputfile, 'w') ind = inputfile1.readlines() cm = inputfile2.readlines()[1:] outputfile.write(ind[0]) #add header for i in ind: i = i.split() for j in cm: j = j.split() if j[0] == i[0]: outputfile.writelines(j[0:3] + i[3:]) inputfile1.close() inputfile2.close() outputfile.close() When I ran it, it returned a single column rather than the format i wanted, any suggestions? Thanks!

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• Duplicate an AppEngine Query object to create variations of a filter without affecting the base quer

  - by Steve Mayne

  In my AppEngine project I have a need to use a certain filter as a base then apply various different extra filters to the end, retrieving the different result sets separately. e.g.: base_query = MyModel.all().filter('mainfilter', 123) Then I need to use the results of various sub queries separately: subquery1 = basequery.filter('subfilter1', 'xyz') #Do something with subquery1 results here subquery2 = basequery.filter('subfilter2', 'abc') #Do something with subquery2 results here Unfortunately 'filter()' affects the state of the basequery Query instance, rather than just returning a modified version. Is there any way to duplicate the Query object and use it as a base? Is there perhaps a standard Python way of duping an object that could be used? The extra filters are actually applied by the results of different forms dynamically within a wizard, and they use the 'running total' of the query in their branch to assess whether to ask further questions. Obviously I could pass around a rudimentary stack of filter criteria, but I'd rather use the Query itself if possible, as it adds simplicity and elegance to the solution.

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• Obtain Latitude and Longitude from a GeoTIFF File

  - by Mikee

  Using GDAL in Python, how do you get the latitude and longitude of a GeoTIFF file? GeoTIFF's do not appear to store any coordinate information. Instead, they store the XY Origin coordinates. However, the XY coordinates do not provide the latitude and longitude of the top left corner and bottom left corner. It appears I will need to do some math to solve this problem, but I don't have a clue on where to start. What procedure is required to have this performed? I know that the GetGeoTransform() method is important for this, however, I don't know what to do with it from there.

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• is this a correct way to generate rsa keys?

  - by calccrypto

  is this code going to give me correct values for RSA keys (assuming that the other functions are correct)? im having trouble getting my program to decrypt properly, as in certain blocks are not decrypting properly this is in python: import random def keygen(bits): p = q = 3 while p == q: p = random.randint(2**(bits/2-2),2**(bits/2)) q = random.randint(2**(bits/2-2),2**(bits/2)) p += not(p&1) # changes the values from q += not(q&1) # even to odd while MillerRabin(p) == False: # checks for primality p -= 2 while MillerRabin(q) == False: q -= 2 n = p * q tot = (p-1) * (q-1) e = tot while gcd(tot,e) != 1: e = random.randint(3,tot-1) d = getd(tot,e) # gets the multiplicative inverse while d<0: # i can probably replace this with mod d = d + tot return e,d,n one set of keys generated: e = 3daf16a37799d3b2c951c9baab30ad2d d = 16873c0dd2825b2e8e6c2c68da3a5e25 n = dc2a732d64b83816a99448a2c2077ced

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• Getting pixel averages of a vector sitting atop a bitmap...

  - by user346511

  I'm currently involved in a hardware project where I am mapping triangular shaped LED to traditional bitmap images. I'd like to overlay a triangle vector onto an image and get the average pixel data within the bounds of that vector. However, I'm unfamiliar with the math needed to calculate this. Does anyone have an algorithm or a link that could send me in the right direction? (I tagged this as Python, which is preferred, but I'd be happy with the general algorithm!) I've created a basic image of what I'm trying to capture here: http://imgur.com/Isjip.gif

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• Returning more than one result

  - by Hairr

  I'm using the following code: def recentchanges(bot=False,rclimit=20): """ @description: Gets the last 20 pages edited on the recent changes and who the user who edited it """ recent_changes_data = { 'action':'query', 'list':'recentchanges', 'rcprop':'user|title', 'rclimit':rclimit, 'format':'json' } if bot is False: recent_changes_data['rcshow'] = '!bot' else: pass data = urllib.urlencode(recent_changes_data) response = opener.open('http://runescape.wikia.com/api.php',data) content = json.load(response) pages = tuple(content['query']['recentchanges']) for title in pages: return title['title'] When I do recentchanges() I only get one result. If I print it though, all the pages are printed. Am I just misunderstanding or is this something relating to python? Also, opener is: cj = CookieJar() opener = urllib2.build_opener(urllib2.HTTPCookieProcessor(cj))

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• My next programming Language

  - by Betamoo

  Currently I can program in: C#, C++, JAVA and PHP. The next summer, I intend to start learning a new language. Can you help me suggesting what must I start reading about? I heard about Perl, Python and Lisp.. but I do not know if any of them will worth more than what I already got in my other languages.. Also please mention how much your suggest language is demanded in career market.. I do not want to learn an obsolete language.. Thanks

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• django + xmppy: send a message to two recipients

  - by Agrajag

  I'm trying to use xmpppy for sending jabber-messages from a django-website. This works entirely fine. However, the message only gets sent to the -first- of the recipients in the list. This happens when I run the following function from django, and also if I run it from an interactive python-shell. The weird part though, is that if I extract the -body- of the function and run that interactively, then all the recipients (there's just 2 at the moment) get the message. Also, I do know that the inner for-loop gets run the correct count times (2), because the print-statement does run twice, and return two different message-ids. The function looks like this: def hello_jabber(request, text): jid=xmpp.protocol.JID(settings.JABBER_ID) cl=xmpp.Client(jid.getDomain(),debug=[]) con=cl.connect() auth=cl.auth(jid.getNode(),settings.JABBER_PW,resource=jid.getResource()) for friend in settings.JABBER_FRIENDS: id=cl.send(xmpp.protocol.Message(friend,friend + ' is awesome:' + text)) print 'sent message with id ' + str(id) cl.disconnect() return render_to_response('jabber/sent.htm', locals())

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• Faster way to convert from 24 bit wav pcm format to float?

  - by LMO

  I need to read data in from a wav file in 24 bit pcm format, and convert to float. I'm using Python 2.7.2. The wave package reads the data in as a string, so what I've tried is: # read in entire wav file wdata = f.readframes(nFrames) # unpack into signed integers and convert to float data = array.array('f') for i in range(0,nFrames*3,3): data.append(float(struct.unpack('<i', '\x00'+ wdata[i:i+3])[0])) # normalize sample values data = data / 0x800000 This is quite a bit faster than my earlier approaches, but still quite slow. Can anyone suggest a more efficient method?

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• How to return a value when destroying/cleaning-up an object instance

  - by Mridang Agarwalla

  When I initiate a class in Python, I give it some values. I then call method in the class which does something. Here's a snippet: class TestClass(): def __init__(self): self.counter = 0 def doSomething(self): self.counter = self.counter + 1 print 'Hiya' if __name__ == "__main__": obj = TestClass() obj.doSomething() obj.doSomething() obj.doSomething() print obj.counter As you can see, everytime I call the doSomething method, it prints some text and increments an internal variable i.e. counter. When I initiate the class, i set the counter variable to 0. When I destroy the object, I'd like to return the internal counter variable. What would be a good way of doing this? I wanted to know if there were other ways apart from doing stuff like: accessing the variable directly. Like obj.counter. creating a method like getCounter. Thanks.

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• Regex for finding valid sphinx fields

  - by mlissner

  I'm trying to validate that the fields given to sphinx are valid, but I'm having difficulty. Imagine that valid fields are cat, mouse, dog, puppy. Valid searches would then be: @cat search terms @(cat) search terms @(cat, dog) search term @cat searchterm1 @dog searchterm2 @(cat, dog) searchterm1 @mouse searchterm2 So, I want to use a regular expression to find terms such as cat, dog, mouse in the above examples, and check them against a list of valid terms. Thus, a query such as: @(goat) Would produce an error because goat is not a valid term. I've gotten so that I can find simple queries such as @cat with this regex: (?:@)([^( ]*) But I can't figure out how to find the rest. I'm using python & django, for what that's worth.

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• Using Property Builtin with GAE Datastore's Model

  - by ejel

  I want to make attributes of GAE Model properties. The reason is for cases like to turn the value into uppercase before storing it. For a plain Python class, I would do something like: Foo(db.Model): def get_attr(self): return self.something def set_attr(self, value): self.something = value.upper() if value != None else None attr = property(get_attr, set_attr) However, GAE Datastore have their own concept of Property class, I looked into the documentation and it seems that I could override get_value_for_datastore(model_instance) to achieve my goal. Nevertheless, I don't know what model_instance is and how to extract the corresponding field from it. Is overriding GAE Property classes the right way to provides getter/setter-like functionality? If so, how to do it? Added: One potential issue of overriding get_value_for_datastore that I think of is it might not get called before the object was put into datastore. Hence getting the attribute before storing the object would yield an incorrect value.

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• Google App Engine Database Index

  - by fjsj

  I need to store a undirected graph in a Google App Engine database. For optimization purposes, I am thinking to use database indexes. Using Google App Engine, is there any way to define the columns of a database table to create its index? I will need some optimization, since my app uses this stored undirected graph on a content-based filtering for item recommendation. Also, the recommender algorithm updates the weights of some graph's edges. If it is not possible to use database indexes, please suggest another method to reduce query time for the graph table. I believe my algorithm does more data retrieval operations from graph table than write operations. PS: I am using Python.

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• Django or Drupal, which one should I use that suits best my needs ?

  - by HJ-INCPP

  Hello, I want to learn and use Drupal or Django for the following: dynamic web sites, medium database, multi-level users, paypal integration, content managment, speed (developing), security I like MVC, ORM and object-oriented prg. Which is better to jump into ? Which one is more mature, powerful, understandable, object-oriented and easier to use by the time ? What about Python Spring ... Also, which of these 3 are better documented, are better for a cv and have more extensions? Known languages: php, java, mysql Thank you !

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• Is this __import__ functionality correct?

  - by Jason Baker

  I have a package named jiva_tasks, which I'm trying to import via celery (using the CELERY_IMPORTS attribute of celeryconfig. The import statement that celery is using is this: __import__(module, [], [], ['']) Oddly enough, when this syntax is used, the module gets imported twice, once as jiva_tasks and another time as jiva_tasks. (with a period at the end). Now, chances are good that celery should be passing in globals rather than an empty list, but this seems broken to me. It seems odd that even if given the wrong arguments, __import__ would import something that isn't a valid python module name. I know that the way to fix this is to pass in globals, but I want to understand why I'm getting this result. Is this a bug, or is there something I don't understand about how __import__ is working? Update: It also seems to be working fine if I use importlib.

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• File management

  - by user343934

  I am working on python and biopython right now. I have a file upload form and whatever file is uploaded suppose(abc.fasta) then i want to pass same name in execute (abc.fasta) function parameter and display function parameter (abc.aln). Right now i am changing file name manually, but i want to have it automatically. Workflow goes like this. ----If submit is not true then display only header and form part --- if submit is true then call execute() and get file name from form input --- Then display the save file result in the same page. File name is same as input. My raw code is here -- http://pastebin.com/FPUgZSSe Any suggestions, changes and algorithm is appreciated Thanks

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• How do I redirect stdin/stdout when I have a sequence of commands in Bash?

  - by Tom

  I've currently got a Bash command being executed (via Python's subprocess::Popen) which is reading from stdin, doing something and outputing to stdout. Something along the lines of: pid = subprocess.Popen( ["-c", "cmd1 | cmd2"], stdin = subprocess.PIPE, stdout = subprocess.PIPE, shell =True ) output_data = pid.communicate( "input data\n" ) Now, what I want to do is to change that to execute another command in that same subshell that will alter the state before the next commands execute, so my shell command line will now (conceptually) be: cmd0; cmd1 | cmd2 Is there any way to have the input sent to cmd1 instead of cmd0 in this scenario? I'm assuming the output will include cmd0's output (which will be empty) followed by cmd2's output. cmd0 shouldn't actually read anything from stdin, does that make a difference in this situation? I know this is probably just a dumb way of doing this, I'm trying to patch in cmd0 without altering the other code too significantly. That said, I'm open to suggestions if there's a much cleaner way to approach this.

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• Need to get the uploaded file to my local PC

  - by Suhail

  Hi, I have created a test form which will ask users to enter a name and upload the image file: <html lang="en"> <head> <title>Testing image upload</title> </head> <body> <form action="/services/upload" method="POST" enctype="multipart/form-data"> File Description: <input name='fdesc' type='text'><br> File name: <input type="file" name="fname"><br> <div><input type="submit"></div> </form> </body> </html> i need to get the file uploaded by the user and store it on my local PC. can this be done in python ? please let me know.

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• Django 1.2 crash course needed

  - by delusionalweekendwarrior

  I know Python but I've never used Django. What do I need to know about Django 1.2 to port my typical PHP CRUD web application in one weekend? (Yes I've read Joel Spolsky's Netscape article :-)) I'm reading this tutorial right now and it's excellent. I'm already playing around with inspectdb to generate my models from the existing schema. I'm planning to use the following features of Django this weekend: Fragment caching Static asset versioning (for far future expires) Schema migrations (or whatever they're called in Django) Auto-admin (and customize it later) The test framework ...other stuff I probably don't know about yet I'm familiar with all these concepts in other languages/frameworks, except for the ORM which I've never used. I know SQL pretty well though. Any links, sage bits of advice, gotchas, stuff not mentioned in the (excellent) tutorial/docs, or stuff that is mentioned but warrants repeating == very welcome. Thanks!

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