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  • Is there a Boost (or other common lib) type for matrices with string keys?

    - by mohawkjohn
    I have a dense matrix where the indices correspond to genes. While gene identifiers are often integers, they are not contiguous integers. They could be strings instead, too. I suppose I could use a boost sparse matrix of some sort with integer keys, and it wouldn't matter if they're contiguous. Or would this still occupy a great deal of space, particularly if some genes have identifiers that are nine digits? Further, I am concerned that sparse storage is not appropriate, since this is an all-by-all matrix (there will be a distance in each and every cell, provided the gene exists). I'm unlikely to need to perform any matrix operations (e.g., matrix multiplication). I will need to pull vectors out of the matrix (slices). It seems like the best type of matrix would be keyed by a Boost unordered_map (a hash map), or perhaps even simply an STL map. Am I looking at this the wrong way? Do I really need to roll my own? I thought I saw such a class somewhere before. Thanks!

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  • Compiling my Boost/NTL program with c++ on Linux.

    - by Martin Lauridsen
    Hi SO, I wrote a client program and a server program, that uses the NTL library and Boost::Asio, to do client/server communication for an integer factorization application, in C++. Both sides consist of several headers and cpp files. Both project compile fine individually on Windows in Visual Studio. All I did, was add the include path of NTL and Boost to both projects: Additional include paths: "D:\Downloads\WinNTL-5_5_2\include";D:\boost_1_42_0 Furthermore, for both projects, I added the two library paths to both projects in VS: Additional library directories: D:\boost_1_42_0\stage\lib;"D:\Documents\Visual Studio 2008\Projects\ntl\Debug" And added under Additional dependencies: ntl.lib As said, it compiles fine on Windows. But when I put the code on a Linux machine provided by university, I try to compile with the following statement c++ -I/appl/htopopt/Linux_x86_64/NTL-5.4.2/include -I/appl/htopopt/Linux_x86_64/boost_1_43_0/include client_protocol.cpp mpqs_client.cpp mpqs_sieve.cpp mpqs_helper.cpp -o mpqs_helper -L/appl/htopopt/Linux_x86_64/NTL-5.4.2/lib -lntl -L/appl/htopopt/Linux_x86_64/gmp-4.2.1/lib -lgmp -lm -L/appl/htopopt/Linux_x86_64/boost_1_43_0/lib -lboost_system -static Upon doing this, I get a huuuge error, which I posted here. Any idea how to fix this, please??

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  • (How) Can I approximate a "dynamic" index (key extractor) for Boost MultiIndex?

    - by Sarah
    I have a MultiIndex container of boost::shared_ptrs to members of class Host. These members contain private arrays bool infections[NUM_SEROTYPES] revealing Hosts' infection statuses with respect to each of 1,...,NUM_SEROTYPES serotypes. I want to be able to determine at any time in the simulation the number of people infected with a given serotype, but I'm not sure how: Ideally, Boost MultiIndex would allow me to sort, for example, by Host::isInfected( int s ), where s is the serotype of interest. From what I understand, MultiIndex key extractors aren't allowed to take arguments. An alternative would be to define an index for each serotype, but I don't see how to write the MultiIndex container typedef ... in such an extensible way. I will be changing the number of serotypes between simulations. (Do experienced programmers think this should be possible? I'll attempt it if so.) There are 2^(NUM_SEROTYPES) possible infection statuses. For small numbers of serotypes, I could use a single index based on this number (or a binary string) and come up with some mapping from this key to actual infection status. Counting is still darn slow. I could maintain a separate structure counting the total numbers of infecteds with each serotype. The synchrony is a bit of a pain, but the memory is fine. I would prefer a slicker option, since I would like to do further sorts on other host attributes (e.g., after counting the number infected with serotype s, count the number of those infected who are also in a particular household and have a particular age). Thanks in advance.

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  • Multiple Silverlight Unit Test Projects in Solution

    - by IUnknown
    I am building out a number of Silverlight 4.0 libraries that are part of the same solution. I like to break them into separate projects and have a Unit Test project for each: SolutionX -LibraryProject1 ---Class1.cs ---Class2.cs -LibraryProject1.Test ---Tests1.cs ---Tests2.cs -LibraryProject2 ---Class1.cs ---Class2.cs ---CLass3.cs -LibraryProject2.Test ---Tests1.cs ---Tests2.cs ---Tests3.cs -LibraryProject3 ---Class1.cs -LibraryProject3.Test ---Tests1.cs This works great when using VS regular test projects and infrastructure because I can create and execute list of test that are aggregated from each Test project. But with the Silverlight Unit Test Framework since the Silverlight Unit Test Project must be the "start up project" I cannot figure how to run a collection of tests from each test project in one go. I have to run each separately then switch the starting project each time. I would prefer to avoid create complex build scripts or build definitions - is there a way to run all the tests at once? -Thanks

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  • Java unit test coverage numbers do not match.

    - by Dan
    Below is a class I have written in a web application I am building using Java Google App Engine. I have written Unit Tests using TestNG and all the tests pass. I then run EclEmma in Eclipse to see the test coverage on my code. All the functions show 100% coverage but the file as a whole is showing about 27% coverage. Where is the 73% uncovered code coming from? Can anyone help me understand how EclEmma works and why I am getting the discrepancy in numbers? package com.skaxo.sports.models; import javax.jdo.annotations.IdGeneratorStrategy; import javax.jdo.annotations.IdentityType; import javax.jdo.annotations.PersistenceCapable; import javax.jdo.annotations.Persistent; import javax.jdo.annotations.PrimaryKey; @PersistenceCapable(identityType= IdentityType.APPLICATION) public class Account { @PrimaryKey @Persistent(valueStrategy=IdGeneratorStrategy.IDENTITY) private Long id; @Persistent private String userId; @Persistent private String firstName; @Persistent private String lastName; @Persistent private String email; @Persistent private boolean termsOfService; @Persistent private boolean systemEmails; public Account() {} public Account(String firstName, String lastName, String email) { super(); this.firstName = firstName; this.lastName = lastName; this.email = email; } public Account(String userId) { super(); this.userId = userId; } public void setId(Long id) { this.id = id; } public Long getId() { return id; } public String getUserId() { return userId; } public void setUserId(String userId) { this.userId = userId; } public String getFirstName() { return firstName; } public void setFirstName(String firstName) { this.firstName = firstName; } public String getLastName() { return lastName; } public void setLastName(String lastName) { this.lastName = lastName; } public String getEmail() { return email; } public void setEmail(String email) { this.email = email; } public boolean acceptedTermsOfService() { return termsOfService; } public void setTermsOfService(boolean termsOfService) { this.termsOfService = termsOfService; } public boolean acceptedSystemEmails() { return systemEmails; } public void setSystemEmails(boolean systemEmails) { this.systemEmails = systemEmails; } } Below is the test code for the above class. package com.skaxo.sports.models; import static org.testng.Assert.assertEquals; import static org.testng.Assert.assertNotNull; import static org.testng.Assert.assertTrue; import static org.testng.Assert.assertFalse; import org.testng.annotations.BeforeTest; import org.testng.annotations.Test; public class AccountTest { @Test public void testId() { Account a = new Account(); a.setId(1L); assertEquals((Long) 1L, a.getId(), "ID"); a.setId(3L); assertNotNull(a.getId(), "The ID is set to null."); } @Test public void testUserId() { Account a = new Account(); a.setUserId("123456ABC"); assertEquals(a.getUserId(), "123456ABC", "User ID incorrect."); a = new Account("123456ABC"); assertEquals(a.getUserId(), "123456ABC", "User ID incorrect."); } @Test public void testFirstName() { Account a = new Account("Test", "User", "[email protected]"); assertEquals(a.getFirstName(), "Test", "User first name not equal to 'Test'."); a.setFirstName("John"); assertEquals(a.getFirstName(), "John", "User first name not equal to 'John'."); } @Test public void testLastName() { Account a = new Account("Test", "User", "[email protected]"); assertEquals(a.getLastName(), "User", "User last name not equal to 'User'."); a.setLastName("Doe"); assertEquals(a.getLastName(), "Doe", "User last name not equal to 'Doe'."); } @Test public void testEmail() { Account a = new Account("Test", "User", "[email protected]"); assertEquals(a.getEmail(), "[email protected]", "User email not equal to '[email protected]'."); a.setEmail("[email protected]"); assertEquals(a.getEmail(), "[email protected]", "User email not equal to '[email protected]'."); } @Test public void testAcceptedTermsOfService() { Account a = new Account(); a.setTermsOfService(true); assertTrue(a.acceptedTermsOfService(), "Accepted Terms of Service not true."); a.setTermsOfService(false); assertFalse(a.acceptedTermsOfService(), "Accepted Terms of Service not false."); } @Test public void testAcceptedSystemEmails() { Account a = new Account(); a.setSystemEmails(true); assertTrue(a.acceptedSystemEmails(), "System Emails is not true."); a.setSystemEmails(false); assertFalse(a.acceptedSystemEmails(), "System Emails is not false."); } }

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  • How to test a 3D rendering engine?

    - by YoYo
    Me and some friends developing simple 3D rendering engine as practice for the university. We used Ogre 3d as prototype and now we are developing it from base The engine is wrapped up in simple game that asks the user to select shape (circle, triangle, square...), color and dimensions and renders the image to the screen. It also enables to move and rotate the shape on screen using mouse. We would like to test automate the view rendering. I could not find any test framework for this issue and I would like to know how 3D test is done in non manual matter

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  • Programming Test

    - by Travis Webb
    We are looking to hire some more Java developers onto our team, and plan to test their coding abilities with a test. We currently use a web-based Java test that automatically compiles and runs the code, but it is very flaky and we're having problems with our candidates losing their work on this site. Not only is this frustrating for everyone, it makes us look like we don't know what we're doing. Is there a popular testing suite out there? What do you use? I'm not interested in dogmatic arguments on whether or not I should be testing my candidates in this way, I'm looking for a tool that will help me do it.

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  • Setting up SANED with sane-test

    - by Enoon
    I'm trying to setup a network service for running saned (running the sane-test backend) on Ubuntu 12.10, running it on a virtualbox. I followed the directions found here: https://help.ubuntu.com/community/ScanningHowTo and i got to the point where if i use a front-end like xsane, or use the command scanimage -d test i get the desired behaviour. (i get the test image). But when i try to use the network demon to access the backend (from the localhost) i get Failed to connect. I used telnet on 127.0.0.1 6566 and i got the following error: saned: symbol lookup error: saned: undefined symbol: sanei_w_init I'm a linux newbie, so i could be making some stupid mistake. Any ideas on how to fix this? Thanks [update]After posting this question i logged out, logged back in and it worked. After a few days i tried again and it gave the same error as before. Any help?

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  • Is unit testing or test-driven development worthwhile?

    - by Owen Johnson
    My team at work is moving to Scrum and other teams are starting to do test-driven development using unit tests and user acceptance tests. I like the UATs, but I'm not sold on unit testing for test-driven development or test-driven development in general. It seems like writing tests is extra work, gives people a crutch when they write the real code, and might not be effective very often. I understand how unit tests work and how to write them, but can anyone make the case that it's really a good idea and worth the effort and time? Also, is there anything that makes TDD especially good for Scrum?

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  • test cases for common algorithms [on hold]

    - by Alexey
    I need samples of test inputs and correct outputs for common algorithms for sorting, searching, data structures, graphs, etc. to check for mistakes in my future implementations. Can you advice resources with test cases? Or a website with community that implements algorithms and shares with results? Thanks! Edit: to clarify: I am going to implement forementioned algorithms for studying purposes and need inputs including large ones and correct outputs to better find mistakes in my implementations, since test cases that I can come up with on my own with might not be enough to reveal mistakes.

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  • How to perform a detailed and quick 3D performance test

    - by gsedej
    I am wondering how to quickly test performance of my 3D graphics. Since glxgears is not benchmark what should I use. Also glxgears sometimes stuck at 60FPS, you cannot even compare before/after driver update (e.g. adding xorg-edgers PPA). Even glxgears doesn't really work out of box. One possibility is screensavers, but you can't see FPS. I am also not willing to install 600MB nexuiz, specially if I am running on Live-CD. Other 3D games are also very big... Unigine tests are too demanding for opensource drivers (problems with too low OpenGL and probably texture compression (S3TC...)). I would also like to test OpenGL 2.x extentions. How to quickly test your 3D performance?

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  • Test driven development - convince me!

    - by Casebash
    I know some people are massive proponents of test driven development. I have used unit tests in the past, but only to test operations that can be tested easily or which I believe will quite possibly be correct. Complete or near complete code coverage sounds like it would take a lot of time. What projects do you use test-driven development for? Do you only use it for projects above a certain size? Should I be using it or not? Convince me!

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  • Why to let / not let developers test their own work

    - by pyvi
    I want to gather some arguments as to why letting a developer testing his/her own work as the last step before the product goes into production is a bad idea, because unfortunately, my place of work sometimes does this (the last time this came up, the argument boiled down to most people being too busy with other things and not having the time to get another person familiar with that part of the program - it's very specialised software). There are test plans in this case (though not always), but I am very much in favor of making a person who didn't make the changes that are tested actually doing the final testing. So I am asking if you could provide me with a good and solid list of arguments I can bring up the next time this is discussed. Or to provide counter-arguments, in case you think this is perfectly fine especially when there are formal test cases to test.

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  • Dog-1 testing as a synonym for integration / system test

    - by SkeetJon
    In the company I'm working for the phrase Dog-1 is used for the software testing scenario where the first piece of data passes through the complete system. Has anyone heard this phrase in a similar context? There's nothing on Google about it in a software development context, so I'm guessing its a idiosyncrasy of my current environment. Is there a recognized phrase in the industry for this kind of test? I don't think it's simply a 'system test' / 'integration test' as 'Dog-1' refers specifically to the first item/unit through the system.

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  • How to test 3d acceleration?

    - by HappyDeveloper
    I want to install and test 3d acceleration in Ubuntu 12. I have read these pages: https://help.ubuntu.com/community/RadeonDriver https://wiki.ubuntu.com/X/Troubleshooting/VideoDriverDetection?action=show&redirect=X%2FTroubleshooting%2FFglrxInteferesWithRadeonDriver#Problem:_Need_to_purge_-fglrx I think I have installed it correctly, but I don't know how to test it. I tried to play minecraft in the browser, but I got a black screen. It may be a java problem too, so I need to troubleshoot. So how can I test my video card and drivers?

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  • career change : non-functional to test automation

    - by centennial
    I started my Career as core-Java developer 6 years ago and stayed as developer for 6-7 month and then moved to performance testing (actualy pushed into this for short term and later I started liking it). I have done all sort of non-functional testing like performance, load, stress, soak, compatibility, failover etc on many performance test tools accross many industries. I was doing contracting all these years which means I kept moving to new projects after every 3-6 months. Now personal situation has been changed, married man now so looking for something long term. Performance testing generally comes at the end of the development life cycle hence very short term contracts so I was wondering if I can move into functional/test automation side I can earn myself good length of contract. I had some exposure of QTP but I am sure to learn all other tools very quickly as I am quite good in programming and concept of testing. in short I want to move into functional test automation to get long term contract without leaving my love for programming . any thoughts please ?

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  • Compiling JS-Test-Driver Plugin and Installing it on Eclipse 3.5.1 Galileo?

    - by leeand00
    I downloaded the source of the js-test-driver from: http://js-test-driver.googlecode.com/svn/tags/1.2 It compiles just fine, but one of the unit tests fails: [junit] Tests run: 1, Failures: 1, Errors: 0, Time elapsed: 0.012 sec [junit] Test com.google.jstestdriver.eclipse.ui.views.FailureOnlyViewerFilterTest FAILED I am using: - ANT 1.7.1 - javac 1.6.0_12 And I'm trying to install the js-test-driver plugin on Eclipse 3.5.1 Galileo Despite the failed test I installed the plugin into my C:\eclipse\dropins\js-test-driver directory by copying (exporting from svn) the compiled feature and plugins directories there, to see if it would yield any hints to what the problem is. When I started eclipse, added the plugin to the panel using Window-Show View-Other... Other-JsTestDriver The plugin for the panel is added, but it displays the following error instead of the plugin in the panel: Could not create the view: Plugin com.google.jstestdriver.eclipse.ui was unable to load class com.google.jstestdriver.eclipse.ui.views.JsTestDriverView. And then bellow that I get the following stack trace after clicking Details: java.lang.ClassNotFoundException: com.google.jstestdriver.eclipse.ui.views.JsTestDriverView at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:494) at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:410) at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:398) at org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.loadClass(DefaultClassLoader.java:105) at java.lang.ClassLoader.loadClass(Unknown Source) at org.eclipse.osgi.internal.loader.BundleLoader.loadClass(BundleLoader.java:326) at org.eclipse.osgi.framework.internal.core.BundleHost.loadClass(BundleHost.java:231) at org.eclipse.osgi.framework.internal.core.AbstractBundle.loadClass(AbstractBundle.java:1193) at org.eclipse.core.internal.registry.osgi.RegistryStrategyOSGI.createExecutableExtension(RegistryStrategyOSGI.java:160) at org.eclipse.core.internal.registry.ExtensionRegistry.createExecutableExtension(ExtensionRegistry.java:874) at org.eclipse.core.internal.registry.ConfigurationElement.createExecutableExtension(ConfigurationElement.java:243) at org.eclipse.core.internal.registry.ConfigurationElementHandle.createExecutableExtension(ConfigurationElementHandle.java:51) at org.eclipse.ui.internal.WorkbenchPlugin$1.run(WorkbenchPlugin.java:267) at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70) at org.eclipse.ui.internal.WorkbenchPlugin.createExtension(WorkbenchPlugin.java:263) at org.eclipse.ui.internal.registry.ViewDescriptor.createView(ViewDescriptor.java:63) at org.eclipse.ui.internal.ViewReference.createPartHelper(ViewReference.java:324) at org.eclipse.ui.internal.ViewReference.createPart(ViewReference.java:226) at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595) at org.eclipse.ui.internal.Perspective.showView(Perspective.java:2229) at org.eclipse.ui.internal.WorkbenchPage.busyShowView(WorkbenchPage.java:1067) at org.eclipse.ui.internal.WorkbenchPage$20.run(WorkbenchPage.java:3816) at org.eclipse.swt.custom.BusyIndicator.showWhile(BusyIndicator.java:70) at org.eclipse.ui.internal.WorkbenchPage.showView(WorkbenchPage.java:3813) at org.eclipse.ui.internal.WorkbenchPage.showView(WorkbenchPage.java:3789) at org.eclipse.ui.handlers.ShowViewHandler.openView(ShowViewHandler.java:165) at org.eclipse.ui.handlers.ShowViewHandler.openOther(ShowViewHandler.java:109) at org.eclipse.ui.handlers.ShowViewHandler.execute(ShowViewHandler.java:77) at org.eclipse.ui.internal.handlers.HandlerProxy.execute(HandlerProxy.java:294) at org.eclipse.core.commands.Command.executeWithChecks(Command.java:476) at org.eclipse.core.commands.ParameterizedCommand.executeWithChecks(ParameterizedCommand.java:508) at org.eclipse.ui.internal.handlers.HandlerService.executeCommand(HandlerService.java:169) at org.eclipse.ui.internal.handlers.SlaveHandlerService.executeCommand(SlaveHandlerService.java:241) at org.eclipse.ui.internal.ShowViewMenu$3.run(ShowViewMenu.java:141) at org.eclipse.jface.action.Action.runWithEvent(Action.java:498) at org.eclipse.jface.action.ActionContributionItem.handleWidgetSelection(ActionContributionItem.java:584) at org.eclipse.jface.action.ActionContributionItem.access$2(ActionContributionItem.java:501) at org.eclipse.jface.action.ActionContributionItem$5.handleEvent(ActionContributionItem.java:411) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:84) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1003) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:3880) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3473) at org.eclipse.ui.internal.Workbench.runEventLoop(Workbench.java:2405) at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2369) at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2221) at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:500) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:493) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149) at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:113) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:194) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:368) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:559) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:514) at org.eclipse.equinox.launcher.Main.run(Main.java:1311) Additionally, if I go to the settings in Window-Preferences and try to view the JS Test Driver Preferences, I get the following dialog: Problem Occurred Unable to create the selected preference page. com.google.jstestdriver.eclipse.ui.WorkbenchPreferencePage Thank you, Andrew J. Leer

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  • fitnesse test framework, arbitrary properties for test and queries/test runs based on them?

    - by Marcel
    hi, our testers have the requirement to store multiple properties for a test that are not present in the "properties". e.g. they want to store priority, a description(not in the wiki page itself) and so on. they don't want to use the tagging mechanism. is there a way to store any kind of new xml node in the properties.xml for a test? these properties should then be used to: query the fields via the search screen run tests based on the "SuiteResponder" ?suite=xxx&TAGx=abc&TAGy=cde they should be returned by "?properties" responder. they should appear in the test history of the test run in essence they want to store any kind of "meta" information in the properties.xml and work with them in all kinds of ways, search, run etc. does anybody here know if there is already something available in that direction? if not i think we have to "pimp" these features into fitnesse to make our testers happy. thanks a lot any help appreciated marcel ps: i've also posted the question in the yahoo fitnesse group

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