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  • R problem with apply + rbind

    - by Carl
    I cannot seem to get the following to work directory <- "./" files.15x16 <- c("15x16-70d.out", "15x16-71d.out") data.15x16<-rbind( lapply( as.array(paste(directory, files.15x16, sep="")), FUN=read.csv, sep=" ", header=F) ) What it should be doing is pretty straightforward - I have a directory name, some file names, and actual files of data. I paste the directory and file names together, read the data from the files in, and then rbind them all together into a single chunk of data. Except the result of the lapply has the data in [[]] - i.e., accessing it occurs via a[[1]], a[[2]], etc which rbind doesn't seem to accept. Suggestions?

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  • Out-of-memory algorithms for addressing large arrays

    - by reve_etrange
    I am trying to deal with a very large dataset. I have k = ~4200 matrices (varying sizes) which must be compared combinatorially, skipping non-unique and self comparisons. Each of k(k-1)/2 comparisons produces a matrix, which must be indexed against its parents (i.e. can find out where it came from). The convenient way to do this is to (triangularly) fill a k-by-k cell array with the result of each comparison. These are ~100 X ~100 matrices, on average. Using single precision floats, it works out to 400 GB overall. I need to 1) generate the cell array or pieces of it without trying to place the whole thing in memory and 2) access its elements (and their elements) in like fashion. My attempts have been inefficient due to reliance on MATLAB's eval() as well as save and clear occurring in loops. for i=1:k [~,m] = size(data{i}); cur_var = ['H' int2str(i)]; %# if i == 1; save('FileName'); end; %# If using a single MAT file and need to create it. eval([cur_var ' = cell(1,k-i);']); for j=i+1:k [~,n] = size(data{j}); eval([cur_var '{i,j} = zeros(m,n,''single'');']); eval([cur_var '{i,j} = compare(data{i},data{j});']); end save(cur_var,cur_var); %# Add '-append' when using a single MAT file. clear(cur_var); end The other thing I have done is to perform the split when mod((i+j-1)/2,max(factor(k(k-1)/2))) == 0. This divides the result into the largest number of same-size pieces, which seems logical. The indexing is a little more complicated, but not too bad because a linear index could be used. Does anyone know/see a better way?

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  • Read from file in eclipse

    - by Buzkie
    I'm trying to read from a text file to input data to my java program. However, eclipse continuosly gives me a Source not found error no matter where I put the file. I've made an additional sources folder in the project directory, the file in question is in both it and the bin file for the project and it still can't find it. I even put a copy of it on my desktop and tried pointing eclipse there when it asked me to browse for the source lookup path. No matter what I do it can't find the file. here's my code in case it's pertinent: System.out.println(System.getProperty("user.dir")); File file = new File("file.txt"); Scanner scanner = new Scanner(file); in addition, it says the user directory is the project directory and there is a copy there too. I have no clue what to do. Thanks, Alex after attempting the suggestion below and refreshing again, I was greeted by a host of errors. FileNotFoundException(Throwable).<init>(String) line: 195 FileNotFoundException(Exception).<init>(String) line: not available FileNotFoundException(IOException).<init>(String) line: not available FileNotFoundException.<init>(String) line: not available URLClassPath$JarLoader.getJarFile(URL) line: not available URLClassPath$JarLoader.access$600(URLClassPath$JarLoader, URL) line: not available URLClassPath$JarLoader$1.run() line: not available AccessController.doPrivileged(PrivilegedExceptionAction<T>) line: not available [native method] URLClassPath$JarLoader.ensureOpen() line: not available URLClassPath$JarLoader.<init>(URL, URLStreamHandler, HashMap) line: not available URLClassPath$3.run() line: not available AccessController.doPrivileged(PrivilegedExceptionAction<T>) line: not available [native method] URLClassPath.getLoader(URL) line: not available URLClassPath.getLoader(int) line: not available URLClassPath.access$000(URLClassPath, int) line: not available URLClassPath$2.next() line: not available URLClassPath$2.hasMoreElements() line: not available ClassLoader$2.hasMoreElements() line: not available CompoundEnumeration<E>.next() line: not available CompoundEnumeration<E>.hasMoreElements() line: not available ServiceLoader$LazyIterator.hasNext() line: not available ServiceLoader$1.hasNext() line: not available LocaleServiceProviderPool$1.run() line: not available AccessController.doPrivileged(PrivilegedExceptionAction<T>) line: not available [native method] LocaleServiceProviderPool.<init>(Class<LocaleServiceProvider>) line: not available LocaleServiceProviderPool.getPool(Class<LocaleServiceProvider>) line: not available NumberFormat.getInstance(Locale, int) line: not available NumberFormat.getNumberInstance(Locale) line: not available Scanner.useLocale(Locale) line: not available Scanner.<init>(Readable, Pattern) line: not available Scanner.<init>(ReadableByteChannel) line: not available Scanner.<init>(File) line: not available code used: System.out.println(System.getProperty("user.dir")); File file = new File(System.getProperty("user.dir") + "/file.txt"); Scanner scanner = new Scanner(file);

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  • Data files from development machine to iOS device

    - by StoneBreaker
    My app has created a bunch of data files as development has progressed through the simulator. Their location is obtained by this function: NSString *pathInDocumentDirectory(NSString *fileName) { NSArray *documentDirectories = NSSearchPathForDirectoriesInDomains(NSDocumentDirectory, NSUserDomainMask, YES); NSString *documentDirectory = [documentDirectories objectAtIndex: 0]; return [documentDirectory stringByAppendingPathComponent: fileName]; } The files are now required on the device as testing of the app is moving from the simulator to actual devices. How do I transfer the data files from my current working environment to the devices?

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  • Execute a Application On The Server Using PHP(With safe_mode enabled)

    - by Nathan Campos
    I have an application on my server that is called leaf.exe, that haves two arguments needed to run, they are: inputfile and outputfile, that will be like this example: pnote.exe input.pnt output.txt The executable is at exec/, inputfile is at upload/ and outputfile is on compiled/. But I need that a PHP could run the application like that, then I want to know: How could I do this on a server that have exec() disabled and I can't turn it on, because I don't have privileges to do it? How could I echo the output of the program?

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  • How to delete duplicate/aggregate rows faster in a file using Java (no DB)

    - by S. Singh
    I have a 2GB big text file, it has 5 columns delimited by tab. A row will be called duplicate only if 4 out of 5 columns matches. Right now, I am doing dduping by first loading each coloumn in separate List , then iterating through lists, deleting the duplicate rows as it encountered and aggregating. The problem: it is taking more than 20 hours to process one file. I have 25 such files to process. Can anyone please share their experience, how they would go about doing such dduping? This dduping will be a throw away code. So, I was looking for some quick/dirty solution, to get job done as soon as possible. Here is my pseudo code (roughly) Iterate over the rows i=current_row_no. Iterate over the row no. i+1 to last_row if(col1 matches //find duplicate && col2 matches && col3 matches && col4 matches) { col5List.set(i,get col5); //aggregate } Duplicate example A and B will be duplicate A=(1,1,1,1,1), B=(1,1,1,1,2), C=(2,1,1,1,1) and output would be A=(1,1,1,1,1+2) C=(2,1,1,1,1) [notice that B has been kicked out]

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  • searching within a compressed sorted fixed width file

    - by user275455
    Assume I have a regular compressed fixed width file that is sorted on one of the fields. Given that I know the length of the records, I can use lseek to implement a binary search to records with fields that match a given value without having to read the entire file. Now the difficulty is that the file is gzipped. Is it possible to do this without completely inflating the file? If not with gzip. is there any compression that supports this kind of behavior?

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  • C++ File manipulation problem

    - by Carlucho
    I am trying to open a file which normally has content, for the purpose of testing i will like to initialize the program without the files being available/existing so then the program should create empty ones, but am having issues implementing it. This is my code originally void loadFiles() { fstream city; city.open("city.txt", ios::in); fstream latitude; latitude.open("lat.txt", ios::in); fstream longitude; longitude.open("lon.txt", ios::in); while(!city.eof()){ city >> cityName; latitude >> lat; longitude >> lon; t.add(cityName, lat, lon); } city.close(); latitude.close(); longitude.close(); } I have tried everything i can think of, ofstream, ifstream, adding ios::out all all its variations. Could anybody explain me what to do in order to fix the problem. Thanks!

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  • Get license file from a folder in C# project

    - by daft
    I have a license file that I need to access at runtime in order to create pdf-files. After I have created the in memory pdf, I need to call a method on that pdf to set the license, like this: pdf.SetLicense("pathToLicenseFileHere"); The license file is located in the same project as the.cs-file that creates the pdf, but is in a separate folder. I cannot get this simple thing to behave correctly, which makes me a bit sad, since it really shouldn't be that hard. :( I try to set the path like this: string path = @"\Resources\File.lic"; But it just isn't working out for me.

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  • Improve performance writing 10 million records to text file using windows service

    - by user1039583
    I'm fetching more than 10 millions of records from database and writing to a text file. It takes hours of time to complete this operation. Is there any option to use TPL features here? It would be great if someone could get me started implementing this with the TPL. using (FileStream fStream = new FileStream("d:\\file.txt", FileMode.OpenOrCreate, FileAccess.ReadWrite)) { BufferedStream bStream = new BufferedStream(fStream); TextWriter writer = new StreamWriter(bStream); for (int i = 0; i < 100000000; i++) { writer.WriteLine(i); } bStream.Flush(); writer.Flush(); // empty buffer; fStream.Flush(); }

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  • Using scanf() in C++ programs is faster than using cin ?

    - by zeroDivisible
    Hello, I don't know if this is true, but when I was reading FAQ on one of the problem providing sites, I found something, that poke my attention: Check your input/output methods. In C++, using cin and cout is too slow. Use these, and you will guarantee not being able to solve any problem with a decent amount of input or output. Use printf and scanf instead. Can someone please clarify this? Is really using scanf() in C++ programs faster than using cin something ? If yes, that is it a good practice to use it in C++ programs? I thought that it was C specific, though I am just learning C++...

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  • Program crashes after trying to use a recently created file. C#

    - by Jason T.
    So here is my code if (!File.Exists(pathName)) { File.Create(pathName); } StreamWriter outputFile = new StreamWriter(pathName,true); But whenever I run the program the first time the path with file gets created. However once I get to the StreamWriter line my program crashes because it says my fie is in use by another process. Is there something I'm missing between the File.Create and the StreamWriter statements?

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  • RAKE won'tt create xml file

    - by user296507
    hi, i'm a bit lost here as to why my RAKE task will not create the desired XML file, however it works fine when i have the method 'build_xml' in the .RB file. require 'rubygems' require 'nokogiri' require 'open-uri' namespace :xml do desc "xml build test" task :xml_build => :environment do build_xml end end def build_xml #build xml docoument builder = Nokogiri::XML::Builder.new do |xml| xml.root { xml.location { xml.value "test" } } end File.open("test.xml", 'w') {|f| f.write(builder.to_xml) } end

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  • Read a file with 2048 bytes

    - by Suresh S
    Guys i have a file which has only one line. The file has no encoding it is a simple text file with single line. For every 2048 byte in a line , there is new record of 151 byte (totally 13*151 byte = 1945 records + 85 byte empty space). similarly for the next 2048 bytes. What is the best file i/o to use? i am thinking of reading 2048 bytes from file and storing it in an array . while (offset < fileLength &&(numRead=in.read(recordChunks, offset,alength)) >= 0) { } how can i get from the read statement only 2048 bytes at a time . i am getting IndexOutofBoundException.

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  • File Operations in Android NDK

    - by EnderX
    I am using the Android NDK to make an application primarily in C for performance reasons, but it appears that file operations such as fopen do not work correctly in Android. Whenever I try to use these functions, the application crashes. How do I create/write to a file with the Android NDK?

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  • Saving MP3 playlist to file

    - by Northernen
    Hello. I am making my own crude MP3 player, and I now have a JList with which I have populated a number of files in the form of MP3 objects (displayed on frame using DefaultListModel). I would now like to have the oppurtunity to save this JList to a file on disk. How would I go about doing this? I'm very new with programming and Java, so help is greatly appreciated.

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  • How to read comma separated values from text file in JAVA?

    - by user1425223
    I have got this text file with latitude and longitude values of different points on a map. I want to store these coordinates into a mySQL database using hibernate. I want to know how can I split my string into latitudes and longitudes? What is the general way to do these type of things that is with other delimiters like space, tab etc.? File: 28.515046280572285,77.38258838653564 28.51430151808072,77.38336086273193 28.513566177802456,77.38413333892822 28.512830832397192,77.38490581512451 28.51208605426073,77.3856782913208 28.511341270865113,77.38645076751709 28.510530488025346,77.38720178604126 28.509615992924807,77.38790988922119 28.50875805732363,77.38862872123718 28.507994394490268,77.38943338394165 28.50728729434496,77.39038825035095 28.506674470385246,77.39145040512085 28.506174780521828,77.39260911941528 28.505665660113582,77.39376783370972 28.505156537248446,77.39492654800415 28.50466626846366,77.39608526229858 28.504175997400655,77.39724397659302 28.503685724059455,77.39840269088745 28.503195448440064,77.39956140518188 28.50276174118543,77.4007523059845 28.502309175192945,77.40194320678711 28.50185660725938,77.40313410758972 28.50140403738471,77.40432500839233 28.500951465568985,77.40551590919495 28.500498891812207,77.40670680999756 28.5000463161144,77.40789771080017 28.49959373847559,77.40908861160278 Code I am using to read from file: try { BufferedReader in = new BufferedReader(new FileReader("G:\\RoutePPAdvant2.txt")); String str; str = in.readLine(); while ((str = in.readLine()) != null) { System.out.println(str); } in.close(); } catch (IOException e) { System.out.println("File Read Error"); }

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  • how to write floating value accurately to a bin file.

    - by user319873
    Hi I am trying to dump the floating point values from my program to a bin file. Since I can't use any stdlib function, I am thinking of writting it char by char to a big char array which I am dumping in my test application to a file. It's like float a=3132.000001; I will be dumping this to a char array in 4 bytes. Code example would be:- if((a < 1.0) && (a > 1.0) || (a > -1.0 && a < 0.0)) a = a*1000000 // 6 bit fraction part. Can you please help me writting this in a better way.

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