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• How do i have a jar communicate with another jar

  - by ObviousComplexities

  Ok so i have 2 jars (Console, Core) 1st-Console) receives user input 2nd-Core) processes the input and gives an output i'm trying to have the two "Communicate" with each other by exchanging input and output now i have tried writing to a file to communicate when i ran into the problem of "Notifying" the other that there is input to receive and output to give i'm a bit new to this ideal so if its an easy function, please don't criticize.

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• Safely escaping and reading back a file path in ruby

  - by user336851

  I need to save a few informations about some files. Nothing too fancy so I thought I would go with a simple one line per item text file. Something like this : # write io.print "%i %s %s\n" % [File.mtime(fname), fname, Digest::SHA1.file(fname).hexdigest] # read io.each do |line| mtime, name, hash = line.scanf "%i %s %s" end Of course this doesn't work because a file name can contain spaces (breaking scanf) and line breaks (breaking IO#each). The line break problem can be avoided by dropping the use of each and going with a bunch of gets(' ') while not io.eof? mtime = Time.at(io.gets(" ").to_i) name = io.gets " " hash = io.gets "\n" end Dealing with spaces in the names is another matter. Now we need to do some escaping. note : I like space as a record delimiter but I'd have no issue changing it for one easier to use. In the case of filenames though, the only one that could help is ascii nul "\0" but a nul delimited file isn't really a text file anymore... I initially had a wall of text detailing the iterations of my struggle to make a correct escaping function and its reciprocal but it was just boring and not really useful. I'll just give you the final result: def write_name(io, val) io << val.gsub(/([\\ ])/, "\\\\\\1") # yes that' 6 backslashes ! end def read_name(io) name, continued = "", true while continued continued = false name += io.gets(' ').gsub(/\\(.)/) do |c| if c=="\\\\" "\\" elsif c=="\\ " continued=true " " else raise "unexpected backslash escape : %p (%s %i)" % [c, io.path, io.pos] end end end return name.chomp(' ') end I'm not happy at all with read_name. Way too long and akward, I feel it shouldn't be that hard. While trying to make this work I tried to come up with other ways : the bittorrent encoded / php serialize way : prefix the file name with the length of the name then just io.read(name_len.to_i). It works but it's a real pita to edit the file by hand. At this point we're halfway to a binary format. String#inspect : This one looks expressly made for that purpose ! Except it seems like the only way to get the value back is through eval. I hate the idea of eval-ing a string I didn't generate from trusted data. So. Opinions ? Isn't there some lib which can do all this ? Am I missing something obvious ? How would you do that ?

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• Erlang: How to view output of io:format/2 calls in processes spawned on remote nodes.

  - by jkndrkn

  Hello, I am working on a decentralized Erlang application. I am currently working on a single PC and creating multiple nodes by initializing erl with the -sname flag. When I spawn a process using spawn/4 on its home node, I can see output generated by calls io:format/2 within that process in its home erl instance. When I spawn a process remotely by using spawn/4 in combination with register_name, output of io:format/2 is sometimes redirected back to the erl instance where the remote spawn/4 call was made, and sometimes remains completely invisible. Similarly, when I use rpc:call/4, output of io:format/2 calls is redirected back to the erl instance where the `rpc:call/4' call is made. How do you get a process to emit debugging output back to its parent erl instance?

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• SATA drive problems with two SIL RAID cards

  - by Jon Topper

  I've just put a second SiI 3114 SATARaid card in my home server so that I could add another pair of SATA drives and increase my storage space. Annoyingly, it doesn't seem to work: [ 32.816030] ata5: lost interrupt (Status 0x0) [ 32.816072] ata5.00: exception Emask 0x0 SAct 0x0 SErr 0x0 action 0x6 frozen [ 32.816091] ata5.00: cmd c8/00:08:00:00:00/00:00:00:00:00/e0 tag 0 dma 4096 in [ 32.816094] res 40/00:00:00:00:00/00:00:00:00:00/00 Emask 0x4 (timeout) [ 32.816101] ata5.00: status: { DRDY } [ 32.816117] ata5: hard resetting link [ 33.136082] ata5: SATA link down (SStatus 0 SControl 0) [ 36.060940] irq 18: nobody cared (try booting with the "irqpoll" option) [ 36.060949] Pid: 0, comm: swapper Not tainted 2.6.31-20-generic #58-Ubuntu [ 36.060954] Call Trace: [ 36.060977] [] ? printk+0x18/0x1c [ 36.060997] [] __report_bad_irq+0x27/0x90 [ 36.061005] [] note_interrupt+0x150/0x190 [ 36.061011] [] handle_fasteoi_irq+0xac/0xd0 [ 36.061023] [] handle_irq+0x18/0x30 [ 36.061029] [] do_IRQ+0x47/0xc0 [ 36.061042] [] ? irq_exit+0x50/0x70 [ 36.061058] [] ? smp_apic_timer_interrupt+0x57/0x90 [ 36.061065] [] common_interrupt+0x30/0x40 [ 36.061075] [] ? native_safe_halt+0x5/0x10 [ 36.061082] [] default_idle+0x46/0xd0 [ 36.061088] [] cpu_idle+0x8c/0xd0 [ 36.061103] [] rest_init+0x55/0x60 [ 36.061111] [] start_kernel+0x2e6/0x2ec [ 36.061117] [] ? unknown_bootoption+0x0/0x19e [ 36.061133] [] i386_start_kernel+0x7c/0x83 [ 36.061137] handlers: [ 36.061139] [] (sil_interrupt+0x0/0xb0) [ 36.061151] Disabling IRQ #18 [ 38.136014] ata5: hard resetting link [ 38.456022] ata5: SATA link down (SStatus 0 SControl 0) [ 43.456013] ata5: hard resetting link [ 43.776022] ata5: SATA link down (SStatus 0 SControl 0) [ 43.776035] ata5.00: disabled [ 43.776055] ata5.00: device reported invalid CHS sector 0 [ 43.776074] sd 4:0:0:0: [sde] Result: hostbyte=DID_OK driverbyte=DRIVER_SENSE [ 43.776082] sd 4:0:0:0: [sde] Sense Key : Aborted Command [current] [descriptor] [ 43.776092] Descriptor sense data with sense descriptors (in hex): [ 43.776097] 72 0b 00 00 00 00 00 0c 00 0a 80 00 00 00 00 00 [ 43.776112] 00 00 00 00 [ 43.776118] sd 4:0:0:0: [sde] Add. Sense: No additional sense information [ 43.776127] end_request: I/O error, dev sde, sector 0 [ 43.776136] Buffer I/O error on device sde, logical block 0 [ 43.776170] ata5: EH complete [ 43.776187] ata5.00: detaching (SCSI 4:0:0:0) root@core:~# cat /proc/interrupts CPU0 0: 47 IO-APIC-edge timer 1: 8 IO-APIC-edge i8042 6: 3 IO-APIC-edge floppy 7: 0 IO-APIC-edge parport0 8: 0 IO-APIC-edge rtc0 9: 0 IO-APIC-fasteoi acpi 14: 53069 IO-APIC-edge pata_sis 15: 53004 IO-APIC-edge pata_sis 17: 112265 IO-APIC-fasteoi sata_sil 18: 200002 IO-APIC-fasteoi sata_sil, SiS SI7012 19: 111140 IO-APIC-fasteoi eth0 20: 0 IO-APIC-fasteoi ohci_hcd:usb2 21: 0 IO-APIC-fasteoi ohci_hcd:usb3 23: 0 IO-APIC-fasteoi ehci_hcd:usb1 NMI: 0 Non-maskable interrupts LOC: 6650492 Local timer interrupts SPU: 0 Spurious interrupts CNT: 0 Performance counter interrupts PND: 0 Performance pending work RES: 0 Rescheduling interrupts CAL: 0 Function call interrupts TLB: 0 TLB shootdowns TRM: 0 Thermal event interrupts THR: 0 Threshold APIC interrupts MCE: 0 Machine check exceptions MCP: 160 Machine check polls ERR: 0 MIS: 0 root@core:~# lspci | grep Raid 00:09.0 RAID bus controller: Silicon Image, Inc. SiI 3114 [SATALink/SATARaid] Serial ATA Controller (rev 02) 00:0a.0 RAID bus controller: Silicon Image, Inc. SiI 3114 [SATALink/SATARaid] Serial ATA Controller (rev 02) root@core:~# lsb_release -a No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 9.10 Release: 9.10 Codename: karmic root@core:~# uname -a Linux core.topper.me.uk 2.6.31-20-generic #58-Ubuntu SMP Fri Mar 12 05:23:09 UTC 2010 i686 GNU/Linux I've tried a combination of different kernel options (irqpoll, noapic, noacpi, pci=noapic) all to no avail. Does anyone have any bright ideas about how I can go about making this work? Swapping PCI cards around isn't an option as there are only two slots in this motherboard (an ASRock K7S41GX). The BIOS doesn't look to have too much in the way of configuration options regarding IRQ usage. Plan B is to ditch this server completely and buy a new QNAP for these drives to go in, but I was hoping to avoid doing this right now.

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• NIC interface names in /proc/interrupts

  - by Gallus

  When I look at /proc/interrupts: $ cat /proc/interrupts CPU0 CPU1 (...) 12: 4 0 IO-APIC-edge i8042 14: 145 65310875 IO-APIC-edge ide0 50: 0 0 IO-APIC-level uhci_hcd:usb5, Intel ICH7 58: 5388 7983508 IO-APIC-level libata 169: 812427252 1236572641 IO-APIC-level skge, eth1 217: 6 0 IO-APIC-level ehci_hcd:usb1, uhci_hcd:usb2 225: 0 0 IO-APIC-level uhci_hcd:usb3 233: 60 3108720778 IO-APIC-level uhci_hcd:usb4, skge I can see two skge and one eth1 entries. All of them are the network cards. Because of the general name "skge" (which is the name of the network driver of the card) I can't easily reocognize, which NIC occupies which interrupt. How to make linux use more descriptive names in the entries? Or: Is there any alternative way to obtain INT information instead of /proc/interrupt? My final goal is to manipulate smp_affinities of the NICs.

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• SQL SERVER – IO_COMPLETION – Wait Type – Day 10 of 28

  - by pinaldave

  For any good system three things are vital: CPU, Memory and IO (disk). Among these three, IO is the most crucial factor of SQL Server. Looking at real-world cases, I do not see IT people upgrading CPU and Memory frequently. However, the disk is often upgraded for either improving the space, speed or throughput. Today we will look at an IO-related wait types. From Book On-Line: Occurs while waiting for I/O operations to complete. This wait type generally represents non-data page I/Os. Data page I/O completion waits appear as PAGEIOLATCH_* waits. IO_COMPLETION Explanation: Any tasks are waiting for I/O to finish. This is a good indication that IO needs to be looked over here. Reducing IO_COMPLETION wait: When it is an issue concerning the IO, one should look at the following things related to IO subsystem: Proper placing of the files is very important. We should check the file system for proper placement of files – LDF and MDF on a separate drive, TempDB on another separate drive, hot spot tables on separate filegroup (and on separate disk),etc. Check the File Statistics and see if there is higher IO Read and IO Write Stall SQL SERVER – Get File Statistics Using fn_virtualfilestats. Check event log and error log for any errors or warnings related to IO. If you are using SAN (Storage Area Network), check the throughput of the SAN system as well as the configuration of the HBA Queue Depth. In one of my recent projects, the SAN was performing really badly so the SAN administrator did not accept it. After some investigations, he agreed to change the HBA Queue Depth on development (test environment) set up and as soon as we changed the HBA Queue Depth to quite a higher value, there was a sudden big improvement in the performance. It is very possible that there are no proper indexes in the system and there are lots of table scans and heap scans. Creating proper index can reduce the IO bandwidth considerably. If SQL Server can use appropriate cover index instead of clustered index, it can effectively reduce lots of CPU, Memory and IO (considering cover index has lesser columns than cluster table and all other; it depends upon the situation). You can refer to the two articles that I wrote; they are about how to optimize indexes: Create Missing Indexes Drop Unused Indexes Checking Memory Related Perfmon Counters SQLServer: Memory Manager\Memory Grants Pending (Consistent higher value than 0-2) SQLServer: Memory Manager\Memory Grants Outstanding (Consistent higher value, Benchmark) SQLServer: Buffer Manager\Buffer Hit Cache Ratio (Higher is better, greater than 90% for usually smooth running system) SQLServer: Buffer Manager\Page Life Expectancy (Consistent lower value than 300 seconds) Memory: Available Mbytes (Information only) Memory: Page Faults/sec (Benchmark only) Memory: Pages/sec (Benchmark only) Checking Disk Related Perfmon Counters Average Disk sec/Read (Consistent higher value than 4-8 millisecond is not good) Average Disk sec/Write (Consistent higher value than 4-8 millisecond is not good) Average Disk Read/Write Queue Length (Consistent higher value than benchmark is not good) Note: The information presented here is from my experience and there is no way that I claim it to be accurate. I suggest reading Book OnLine for further clarification. All the discussions of Wait Stats in this blog are generic and vary from system to system. It is recommended that you test this on a development server before implementing it to a production server. Reference: Pinal Dave (http://blog.SQLAuthority.com) Filed under: Pinal Dave, PostADay, SQL, SQL Authority, SQL Query, SQL Scripts, SQL Server, SQL Tips and Tricks, SQL Wait Types, SQL White Papers, T SQL, Technology

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• When using software RAID and LVM on Linux, which IO scheduler and readahead settings are honored?

  - by andrew311

  In the case of multiple layers (physical drives - md - dm - lvm), how do the schedulers, readahead settings, and other disk settings interact? Imagine you have several disks (/dev/sda - /dev/sdd) all part of a software RAID device (/dev/md0) created with mdadm. Each device (including physical disks and /dev/md0) has its own setting for IO scheduler (changed like so) and readahead (changed using blockdev). When you throw in things like dm (crypto) and LVM you add even more layers with their own settings. For example, if the physical device has a read ahead of 128 blocks and the RAID has a readahead of 64 blocks, which is honored when I do a read from /dev/md0? Does the md driver attempt a 64 block read which the physical device driver then translates to a read of 128 blocks? Or does the RAID readahead "pass-through" to the underlying device, resulting in a 64 block read? The same kind of question holds for schedulers? Do I have to worry about multiple layers of IO schedulers and how they interact, or does the /dev/md0 effectively override underlying schedulers? In my attempts to answer this question, I've dug up some interesting data on schedulers and tools which might help figure this out: Linux Disk Scheduler Benchmarking from Google blktrace - generate traces of the i/o traffic on block devices Relevant Linux kernel mailing list thread

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• mysql disk io keeps increasing ... is that normal?

  - by trustfundbaby

  So I've been trying to figure out this disk IO problem I have been having with my linode VPS. Over the last day or two I've just left watch -n1 pidstat -d running in a console window and the output looks like this: Monitoring it over the last few days, I've noticed that my problem lies with the init, searchd, and mysql processes. Searchd is sphinx and all its indexes are on disk, so disk io there is inevitable (apparently). What I can't understand is why the disk reads (kB_rd/s) for mysql refuse to stabilize and just keep going up. It started out at 154 yesterday and is up to what you see in that screen shot. but disk writes (kB_wr/s) have remained pretty constant the entire time. My VPS only has 768MB RAM, my mysql db has a size of about 220MB and after running mysqltuner.pl and reading a bit about it, I've been advised to set my innodb_buffer_pool_size to 220MB but I simply cannot afford to do that ... I have it up to 150MB. My question is twofold. Why does the init process have that much disk reading to do? Why is mysql doing so much disk reading?

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• what's the right way to use scala.io.Source?

  - by woods

  In many examples, it is described that you can use scala.io.Source to read a whole file like this: val str = scala.io.Source.fromFile("test.txt").mkString() But closing the underlying stream is not mentioned. Why does Scala not provide a convenient way to do that such as with clause in Python? It looks useful but not difficult. Is there any other better way to do that safely in Scala, i means to read a whole file?

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• Why do updates inside of a SQL transaction still need disk IO?

  - by usr

  In SQL Profiler you can see that very simple updates to a table by primary key take about 10-30ms each. On about every 10th update the write column shows 1, on all other updates it shows 0. This must mean that about every 10th update statement still requires disk IO. I wonder why that is. Would it not be more efficient queue up all IO until the transaction commits?

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• How to resolve java.nio.charset.UnmappableCharacterException in Scala 2.8.0?

  - by Roman Kagan

  I'm using Scala 2.8.0 and trying to read pipe delimited file like in code snipped below: object Main { def main(args: Array[String]) :Unit = { if (args.length > 0) { val lines = scala.io.Source.fromPath("QUICK!LRU-2009-11-15.psv") for (line <-lines) print(line) } } } Here's the error: Exception in thread "main" java.nio.charset.UnmappableCharacterException: Input length = 1 at java.nio.charset.CoderResult.throwException(CoderResult.java:261) at sun.nio.cs.StreamDecoder.implRead(StreamDecoder.java:319) at sun.nio.cs.StreamDecoder.read(StreamDecoder.java:158) at java.io.InputStreamReader.read(InputStreamReader.java:167) at java.io.BufferedReader.fill(BufferedReader.java:136) at java.io.BufferedReader.read(BufferedReader.java:157) at scala.io.BufferedSource$$anonfun$1$$anonfun$apply$1.apply(BufferedSource.scala:29) at scala.io.BufferedSource$$anonfun$1$$anonfun$apply$1.apply(BufferedSource.scala:29) at scala.io.Codec.wrap(Codec.scala:65) at scala.io.BufferedSource$$anonfun$1.apply(BufferedSource.scala:29) at scala.io.BufferedSource$$anonfun$1.apply(BufferedSource.scala:29) at scala.collection.Iterator$$anon$14.next(Iterator.scala:149) at scala.collection.Iterator$$anon$2.next(Iterator.scala:745) at scala.collection.Iterator$$anon$2.head(Iterator.scala:732) at scala.collection.Iterator$$anon$24.hasNext(Iterator.scala:405) at scala.collection.Iterator$$anon$20.hasNext(Iterator.scala:320) at scala.io.Source.hasNext(Source.scala:209) at scala.collection.Iterator$class.foreach(Iterator.scala:534) at scala.io.Source.foreach(Source.scala:143) ... at infillreports.Main$.main(Main.scala:8) at infillreports.Main.main(Main.scala) Java Result: 1

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• ValidationException class version mismatch

  - by suszterpatt

  I have a simple EJB application that I can deploy and test on a local WebLogic instance (v10.3.0.0) without problems. I need to deploy this on a remote WL server (v10.3.3.0), and test it from a local machine. Deployment is successful, but when I try to run any of the clients from JDeveloper, I get this error: <2010.06.02. 16:08:36 CEST> <Error> <RJVM> <BEA-000503> <Incoming message header or abbreviation processing failed java.io.InvalidClassException: org.eclipse.persistence.exceptions.ValidationException; local class incompatible: stream classdesc serialVersionUID = 3793659634176227230, local class serialVersionUID = -7605463488982202416 java.io.InvalidClassException: org.eclipse.persistence.exceptions.ValidationException; local class incompatible: stream classdesc serialVersionUID = 3793659634176227230, local class serialVersionUID = -7605463488982202416 at java.io.ObjectStreamClass.initNonProxy(ObjectStreamClass.java:562) at java.io.ObjectInputStream.readNonProxyDesc(ObjectInputStream.java:1583) at java.io.ObjectInputStream.readClassDesc(ObjectInputStream.java:1496) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1316) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:351) at weblogic.rjvm.ClassTableEntry.readExternal(ClassTableEntry.java:36) at java.io.ObjectInputStream.readExternalData(ObjectInputStream.java:1792) at java.io.ObjectInputStream.readOrdinaryObject(ObjectInputStream.java:1751) at java.io.ObjectInputStream.readObject0(ObjectInputStream.java:1329) at java.io.ObjectInputStream.readObject(ObjectInputStream.java:351) at weblogic.rjvm.InboundMsgAbbrev.readObject(InboundMsgAbbrev.java:65) at weblogic.rjvm.InboundMsgAbbrev.read(InboundMsgAbbrev.java:37) at weblogic.rjvm.MsgAbbrevJVMConnection.readMsgAbbrevs(MsgAbbrevJVMConnection.java:227) at weblogic.rjvm.MsgAbbrevInputStream.init(MsgAbbrevInputStream.java:173) at weblogic.rjvm.MsgAbbrevJVMConnection.dispatch(MsgAbbrevJVMConnection.java:439) at weblogic.rjvm.t3.MuxableSocketT3.dispatch(MuxableSocketT3.java:322) at weblogic.socket.AbstractMuxableSocket.dispatch(AbstractMuxableSocket.java:394) at weblogic.socket.SocketMuxer.readReadySocketOnce(SocketMuxer.java:917) at weblogic.socket.SocketMuxer.readReadySocket(SocketMuxer.java:849) at weblogic.socket.JavaSocketMuxer.processSockets(JavaSocketMuxer.java:283) at weblogic.socket.SocketReaderRequest.run(SocketReaderRequest.java:29) at weblogic.work.ExecuteRequestAdapter.execute(ExecuteRequestAdapter.java:21) at weblogic.kernel.ExecuteThread.execute(ExecuteThread.java:145) at weblogic.kernel.ExecuteThread.run(ExecuteThread.java:117) Can anyone explain why I'm getting this error, and what I can do to resolve it?

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• Passing System classes as constructor parameters

  - by mcl

  This is probably crazy. I want to take the idea of Dependency Injection to extremes. I have isolated all System.IO-related behavior into a single class so that I can mock that class in my other classes and thereby relieve my larger suite of unit tests of the burden of worrying about the actual file system. But the File IO class I end up with can only be tested with integration tests, which-- of course-- introduces complexity I don't really want to deal with when all I really want to do is make sure my FileIO class calls the correct System.IO stuff. I don't need to integration test System.IO. My FileIO class is doing more than simply wrapping System.IO functions, every now and then it does contain some logic (maybe this is the problem?). So what I'd like is to be able to test my File IO class to ensure that it makes the correct system calls by mocking the System.IO classes themselves. Ideally this would be as easy as having a constructor like so: public FileIO( System.IO.Directory directory, System.IO.File file, System.IO.FileStream fileStream ) { this.Directory = directory; this.File = file; this.FileStream = fileStream; } And then calling in methods like: public GetFilesInFolder(string folderPath) { return this.Directory.GetFiles(folderPath) } But this doesn't fly since the System.IO classes in question are static classes. As far as I can tell they can neither be instantiated in this way or subclassed for the purposes of mocking.

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• Linux disk IO load breakdown, by filesystem path and/or process?

  - by Ryan B. Lynch

  Does anyone have experience with a tool that can provide an indication of disk IO load by filesystem path. I use to 'iostat' utility, frequently, to learn how much disk activity is taking place on a Linux host. 'iostat' provides a per-device breakdown, so you can see activity on a particular block device. But it doesn't go any deeper than that--you can't, for instance, query the write load generated by 'httpd' in the directory '/var/log/httpd/'.

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• Intel xeon virtualization feature - vt-d /directed io - Chipset feature?

  - by deploymonkey

  Intel processor specifications list the virtualization feature vt-d as a processor feature of the xeon 5500 series but not of the 5600 series. Vt-d is needed for io virtualization. How does vt-d relate to intel processors, there is no information.

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• How to use IO.popen to write-to and read-from a child process?

  - by mackenir

  I am running net share from a ruby script to delete a windows network share. If files on the share are in use, net share will ask the user if they want to go ahead with the deletion, so my script needs to inspect the output from the command, and write out Y if it detects that net share is asking it for input. In order to be able to write out to the process I open it with access flags "r+". When attempting to write to the process with IO#puts, I get an error: Errno::EPIPE: Broken pipe What am I doing wrong here? (The error occurs on the line net_share.puts "Y") (The question text written out by net share is not followed by a newline, so I am using IO#readpartial to read in the output.) def delete_network_share share_path command = "net share #{share_path} /DELETE" net_share = IO.popen(command, "r+") text = "" while true begin line = net_share.readpartial 1000 #read all the input that's available rescue EOFError break end text += line if text.scan("Do you want to continue this operation? (Y/N)").size > 0 net_share.puts "Y" net_share.flush #probably not needed? end end net_share.close end

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• unexplainable packet drops with 5 ethernet NICs and low traffic on Ubuntu

  - by jon

  I'm stuck on problem where my machine started to drops packets with no sign of ANY system load or high interrupt usage after an upgrade to Ubuntu 12.04. My server is a network monitoring sensor, running Ubuntu LTS 12.04, it passively collects packets from 5 interfaces doing network intrusion type stuff. Before the upgrade I managed to collect 200+GB of packets a day while writing them to disk with around 0% packet loss depending on the day with the help of CPU affinity and NIC IRQ to CPU bindings. Now I lose a great deal of packets with none of my applications running and at very low PPS rate which a modern workstation NIC would have no trouble with. Specs: x64 Xeon 4 cores 3.2 Ghz 16 GB RAM NICs: 5 Intel Pro NICs using the e1000 driver (NAPI). [1] eth0 and eth1 are integrated NICs (in the motherboard) There are 2 other PCI-X network cards, each with 2 Ethernet ports. 3 of the interfaces are running at Gigabit Ethernet, the others are not because they're attached to hubs. Specs: [2] http://support.dell.com/support/edocs/systems/pe2850/en/ug/t1390aa.htm uptime 17:36:00 up 1:43, 2 users, load average: 0.00, 0.01, 0.05 # uname -a Linux nms 3.2.0-29-generic #46-Ubuntu SMP Fri Jul 27 17:03:23 UTC 2012 x86_64 x86_64 x86_64 GNU/Linux I also have the CPU governor set to performance mode and irqbalance off. The problem still occurs with them on. # lspci -t -vv -[0000:00]-+-00.0 Intel Corporation E7520 Memory Controller Hub +-02.0-[01-03]--+-00.0-[02]----0e.0 Dell PowerEdge Expandable RAID controller 4 | \-00.2-[03]-- +-04.0-[04]-- +-05.0-[05-07]--+-00.0-[06]----07.0 Intel Corporation 82541GI Gigabit Ethernet Controller | \-00.2-[07]----08.0 Intel Corporation 82541GI Gigabit Ethernet Controller +-06.0-[08-0a]--+-00.0-[09]--+-04.0 Intel Corporation 82546EB Gigabit Ethernet Controller (Copper) | | \-04.1 Intel Corporation 82546EB Gigabit Ethernet Controller (Copper) | \-00.2-[0a]--+-02.0 Digium, Inc. Wildcard TE210P/TE212P dual-span T1/E1/J1 card 3.3V | +-03.0 Intel Corporation 82546EB Gigabit Ethernet Controller (Copper) | \-03.1 Intel Corporation 82546EB Gigabit Ethernet Controller (Copper) +-1d.0 Intel Corporation 82801EB/ER (ICH5/ICH5R) USB UHCI Controller #1 +-1d.1 Intel Corporation 82801EB/ER (ICH5/ICH5R) USB UHCI Controller #2 +-1d.2 Intel Corporation 82801EB/ER (ICH5/ICH5R) USB UHCI Controller #3 +-1d.7 Intel Corporation 82801EB/ER (ICH5/ICH5R) USB2 EHCI Controller +-1e.0-[0b]----0d.0 Advanced Micro Devices [AMD] nee ATI RV100 QY [Radeon 7000/VE] +-1f.0 Intel Corporation 82801EB/ER (ICH5/ICH5R) LPC Interface Bridge \-1f.1 Intel Corporation 82801EB/ER (ICH5/ICH5R) IDE Controller I believe the NIC nor the NIC drivers are dropping the packets because ethtool reports 0 under rx_missed_errors and rx_no_buffer_count for each interface. On the old system, if it couldn't keep up this is where the drops would be. I drop packets on multiple interfaces just about every second, usually in small increments of 2-4. I tried all these sysctl values, I'm currently using the uncommented ones. # cat /etc/sysctl.conf # high net.core.netdev_max_backlog = 3000000 net.core.rmem_max = 16000000 net.core.rmem_default = 8000000 # defaults #net.core.netdev_max_backlog = 1000 #net.core.rmem_max = 131071 #net.core.rmem_default = 163480 # moderate #net.core.netdev_max_backlog = 10000 #net.core.rmem_max = 33554432 #net.core.rmem_default = 33554432 Here's an example of an interface stats report with ethtool. They are all the same, nothing is out of the ordinary ( I think ), so I'm only going to show one: ethtool -S eth2 NIC statistics: rx_packets: 7498 tx_packets: 0 rx_bytes: 2722585 tx_bytes: 0 rx_broadcast: 327 tx_broadcast: 0 rx_multicast: 1504 tx_multicast: 0 rx_errors: 0 tx_errors: 0 tx_dropped: 0 multicast: 1504 collisions: 0 rx_length_errors: 0 rx_over_errors: 0 rx_crc_errors: 0 rx_frame_errors: 0 rx_no_buffer_count: 0 rx_missed_errors: 0 tx_aborted_errors: 0 tx_carrier_errors: 0 tx_fifo_errors: 0 tx_heartbeat_errors: 0 tx_window_errors: 0 tx_abort_late_coll: 0 tx_deferred_ok: 0 tx_single_coll_ok: 0 tx_multi_coll_ok: 0 tx_timeout_count: 0 tx_restart_queue: 0 rx_long_length_errors: 0 rx_short_length_errors: 0 rx_align_errors: 0 tx_tcp_seg_good: 0 tx_tcp_seg_failed: 0 rx_flow_control_xon: 0 rx_flow_control_xoff: 0 tx_flow_control_xon: 0 tx_flow_control_xoff: 0 rx_long_byte_count: 2722585 rx_csum_offload_good: 0 rx_csum_offload_errors: 0 alloc_rx_buff_failed: 0 tx_smbus: 0 rx_smbus: 0 dropped_smbus: 01 # ifconfig eth0 Link encap:Ethernet HWaddr 00:11:43:e0:e2:8c UP BROADCAST RUNNING NOARP PROMISC ALLMULTI MULTICAST MTU:1500 Metric:1 RX packets:373348 errors:16 dropped:95 overruns:0 frame:16 TX packets:0 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:0 RX bytes:356830572 (356.8 MB) TX bytes:0 (0.0 B) eth1 Link encap:Ethernet HWaddr 00:11:43:e0:e2:8d UP BROADCAST RUNNING NOARP PROMISC ALLMULTI MULTICAST MTU:1500 Metric:1 RX packets:13616 errors:0 dropped:0 overruns:0 frame:0 TX packets:0 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:0 RX bytes:8690528 (8.6 MB) TX bytes:0 (0.0 B) eth2 Link encap:Ethernet HWaddr 00:04:23:e1:77:6a UP BROADCAST RUNNING NOARP PROMISC ALLMULTI MULTICAST MTU:1500 Metric:1 RX packets:7750 errors:0 dropped:471 overruns:0 frame:0 TX packets:0 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:0 RX bytes:2780935 (2.7 MB) TX bytes:0 (0.0 B) eth3 Link encap:Ethernet HWaddr 00:04:23:e1:77:6b UP BROADCAST RUNNING NOARP PROMISC ALLMULTI MULTICAST MTU:1500 Metric:1 RX packets:5112 errors:0 dropped:206 overruns:0 frame:0 TX packets:0 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:0 RX bytes:639472 (639.4 KB) TX bytes:0 (0.0 B) eth4 Link encap:Ethernet HWaddr 00:04:23:b6:35:6c UP BROADCAST RUNNING NOARP PROMISC ALLMULTI MULTICAST MTU:1500 Metric:1 RX packets:961467 errors:0 dropped:935 overruns:0 frame:0 TX packets:0 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:0 RX bytes:958561305 (958.5 MB) TX bytes:0 (0.0 B) eth5 Link encap:Ethernet HWaddr 00:04:23:b6:35:6d inet addr:192.168.1.6 Bcast:192.168.1.255 Mask:255.255.255.0 UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1 RX packets:4264 errors:0 dropped:16 overruns:0 frame:0 TX packets:699 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:1000 RX bytes:572228 (572.2 KB) TX bytes:124456 (124.4 KB) I tried the defaults, then started to play around with settings. I wasn't using any flow control and I increased the RxDescriptor count to 4096 before the upgrade as well without any problems. # cat /etc/modprobe.d/e1000.conf options e1000 XsumRX=0,0,0,0,0 RxDescriptors=4096,4096,4096,4096,4096 FlowControl=0,0,0,0,0 debug=16 Here's my network configuration file, I turned off checksumming and various offloading mechanisms along with setting CPU affinity with heavy use interfaces getting an entire CPU and light use interfaces sharing a CPU. I used these settings prior to the upgrade without problems. # cat /etc/network/interfaces # The loopback network interface auto lo iface lo inet loopback # The primary network interface auto eth0 iface eth0 inet manual pre-up /sbin/ethtool -G eth0 rx 4096 tx 0 pre-up /sbin/ethtool -K eth0 gro off gso off rx off pre-up /sbin/ethtool -A eth0 rx off autoneg off up ifconfig eth0 0.0.0.0 -arp promisc mtu 1500 allmulti txqueuelen 0 up post-up echo "4" > /proc/irq/48/smp_affinity down ifconfig eth0 down post-down /sbin/ethtool -G eth0 rx 256 tx 256 post-down /sbin/ethtool -K eth0 gro on gso on rx on post-down /sbin/ethtool -A eth0 rx on autoneg on auto eth1 iface eth1 inet manual pre-up /sbin/ethtool -G eth1 rx 4096 tx 0 pre-up /sbin/ethtool -K eth1 gro off gso off rx off pre-up /sbin/ethtool -A eth1 rx off autoneg off up ifconfig eth1 0.0.0.0 -arp promisc mtu 1500 allmulti txqueuelen 0 up post-up echo "4" > /proc/irq/49/smp_affinity down ifconfig eth1 down post-down /sbin/ethtool -G eth1 rx 256 tx 256 post-down /sbin/ethtool -K eth1 gro on gso on rx on post-down /sbin/ethtool -A eth1 rx on autoneg on auto eth2 iface eth2 inet manual pre-up /sbin/ethtool -G eth2 rx 4096 tx 0 pre-up /sbin/ethtool -K eth2 gro off gso off rx off pre-up /sbin/ethtool -A eth2 rx off autoneg off up ifconfig eth2 0.0.0.0 -arp promisc mtu 1500 allmulti txqueuelen 0 up post-up echo "1" > /proc/irq/82/smp_affinity down ifconfig eth2 down post-down /sbin/ethtool -G eth2 rx 256 tx 256 post-down /sbin/ethtool -K eth2 gro on gso on rx on post-down /sbin/ethtool -A eth2 rx on autoneg on auto eth3 iface eth3 inet manual pre-up /sbin/ethtool -G eth3 rx 4096 tx 0 pre-up /sbin/ethtool -K eth3 gro off gso off rx off pre-up /sbin/ethtool -A eth3 rx off autoneg off up ifconfig eth3 0.0.0.0 -arp promisc mtu 1500 allmulti txqueuelen 0 up post-up echo "2" > /proc/irq/83/smp_affinity down ifconfig eth3 down post-down /sbin/ethtool -G eth3 rx 256 tx 256 post-down /sbin/ethtool -K eth3 gro on gso on rx on post-down /sbin/ethtool -A eth3 rx on autoneg on auto eth4 iface eth4 inet manual pre-up /sbin/ethtool -G eth4 rx 4096 tx 0 pre-up /sbin/ethtool -K eth4 gro off gso off rx off pre-up /sbin/ethtool -A eth4 rx off autoneg off up ifconfig eth4 0.0.0.0 -arp promisc mtu 1500 allmulti txqueuelen 0 up post-up echo "4" > /proc/irq/77/smp_affinity down ifconfig eth4 down post-down /sbin/ethtool -G eth4 rx 256 tx 256 post-down /sbin/ethtool -K eth4 gro on gso on rx on post-down /sbin/ethtool -A eth4 rx on autoneg on auto eth5 iface eth5 inet static pre-up /etc/fw.conf address 192.168.1.1 netmask 255.255.255.0 broadcast 192.168.1.255 gateway 192.168.1.1 dns-nameservers 192.168.1.2 192.168.1.3 up ifconfig eth5 up post-up echo "8" > /proc/irq/77/smp_affinity down ifconfig eth5 down Here's a few examples of packet drops, i ran one after another, probabling totaling 3 or 4 seconds. You can see increases in the drops from the 1st and 3rd. This was a non-busy time, very little traffic. # awk '{ print $1,$5 }' /proc/net/dev Inter-| face drop eth3: 225 lo: 0 eth2: 505 eth1: 0 eth5: 17 eth0: 105 eth4: 1034 # awk '{ print $1,$5 }' /proc/net/dev Inter-| face drop eth3: 225 lo: 0 eth2: 507 eth1: 0 eth5: 17 eth0: 105 eth4: 1034 # awk '{ print $1,$5 }' /proc/net/dev Inter-| face drop eth3: 227 lo: 0 eth2: 512 eth1: 0 eth5: 17 eth0: 105 eth4: 1039 I tried the pci=noacpi options. With and without, it's the same. This is what my interrupt stats looked like before the upgrade, after, with ACPI on PCI it showed multiple NICs bound to an interrupt and shared with other devices such as USB drives which I didn't like so I think i'm going to keep it with ACPI off as it's easier to designate sole purpose interrupts. Is there any advantage I would have using the default i.e. ACPI w/ PCI. ? # cat /etc/default/grub | grep CMD_LINE GRUB_CMDLINE_LINUX_DEFAULT="ipv6.disable=1 noacpi pci=noacpi" GRUB_CMDLINE_LINUX="" # cat /proc/interrupts CPU0 CPU1 CPU2 CPU3 0: 45 0 0 16 IO-APIC-edge timer 1: 1 0 0 7936 IO-APIC-edge i8042 2: 0 0 0 0 XT-PIC-XT-PIC cascade 6: 0 0 0 3 IO-APIC-edge floppy 8: 0 0 0 1 IO-APIC-edge rtc0 9: 0 0 0 0 IO-APIC-edge acpi 12: 0 0 0 1809 IO-APIC-edge i8042 14: 1 0 0 4498 IO-APIC-edge ata_piix 15: 0 0 0 0 IO-APIC-edge ata_piix 16: 0 0 0 0 IO-APIC-fasteoi uhci_hcd:usb2 18: 0 0 0 1350 IO-APIC-fasteoi uhci_hcd:usb4, radeon 19: 0 0 0 0 IO-APIC-fasteoi uhci_hcd:usb3 23: 0 0 0 4099 IO-APIC-fasteoi ehci_hcd:usb1 38: 0 0 0 61963 IO-APIC-fasteoi megaraid 48: 0 0 1002319 4 IO-APIC-fasteoi eth0 49: 0 0 38772 3 IO-APIC-fasteoi eth1 77: 0 0 130076 432159 IO-APIC-fasteoi eth4 78: 0 0 0 23917 IO-APIC-fasteoi eth5 82: 1329033 0 0 4 IO-APIC-fasteoi eth2 83: 0 4886525 0 6 IO-APIC-fasteoi eth3 NMI: 5 6 4 5 Non-maskable interrupts LOC: 61409 57076 64257 114764 Local timer interrupts SPU: 0 0 0 0 Spurious interrupts IWI: 0 0 0 0 IRQ work interrupts RES: 17956 25333 13436 14789 Rescheduling interrupts CAL: 22436 607 539 478 Function call interrupts TLB: 1525 1458 4600 4151 TLB shootdowns TRM: 0 0 0 0 Thermal event interrupts THR: 0 0 0 0 Threshold APIC interrupts MCE: 0 0 0 0 Machine check exceptions MCP: 16 16 16 16 Machine check polls ERR: 0 MIS: 0 Here's sample output of vmstat, showing the system. Barebones system right now. root@nms:~# vmstat -S m 1 procs -----------memory---------- ---swap-- -----io---- -system-- ----cpu---- r b swpd free buff cache si so bi bo in cs us sy id wa 0 0 0 14992 192 1029 0 0 56 2 419 29 1 0 99 0 0 0 0 14992 192 1029 0 0 0 0 922 27 0 0 100 0 0 0 0 14991 192 1029 0 0 0 36 763 50 0 0 100 0 0 0 0 14991 192 1029 0 0 0 0 646 35 0 0 100 0 0 0 0 14991 192 1029 0 0 0 0 722 54 0 0 100 0 0 0 0 14991 192 1029 0 0 0 0 793 27 0 0 100 0 ^C Here's dmesg output. I can't figure out why my PCI-X slots are negotiated as PCI. The network cards are all PCI-X with the exception of the integrated NICs that came with the server. In the output below it looks as if eth3 and eth2 negotiated at PCI-X speeds rather than PCI:66Mhz. Wouldn't they all drop to PCI:66Mhz? If your integrated NICs are PCI, as labeled below (eth0,eth1), then wouldn't all devices on your bus speed drop down to that slower bus speed? If not, I still don't know why only one of my NICs ( each has two ethernet ports) is labeled as PCI-X in the output below. Does that mean it is running at PCI-X speeds are is it showing that it's capable? # dmesg | grep e1000 [ 3678.349337] e1000: Intel(R) PRO/1000 Network Driver - version 7.3.21-k8-NAPI [ 3678.349342] e1000: Copyright (c) 1999-2006 Intel Corporation. [ 3678.349394] e1000 0000:06:07.0: PCI->APIC IRQ transform: INT A -> IRQ 48 [ 3678.409725] e1000 0000:06:07.0: Receive Descriptors set to 4096 [ 3678.409730] e1000 0000:06:07.0: Checksum Offload Disabled [ 3678.409734] e1000 0000:06:07.0: Flow Control Disabled [ 3678.586409] e1000 0000:06:07.0: eth0: (PCI:66MHz:32-bit) 00:11:43:e0:e2:8c [ 3678.586419] e1000 0000:06:07.0: eth0: Intel(R) PRO/1000 Network Connection [ 3678.586642] e1000 0000:07:08.0: PCI->APIC IRQ transform: INT A -> IRQ 49 [ 3678.649854] e1000 0000:07:08.0: Receive Descriptors set to 4096 [ 3678.649859] e1000 0000:07:08.0: Checksum Offload Disabled [ 3678.649863] e1000 0000:07:08.0: Flow Control Disabled [ 3678.826436] e1000 0000:07:08.0: eth1: (PCI:66MHz:32-bit) 00:11:43:e0:e2:8d [ 3678.826444] e1000 0000:07:08.0: eth1: Intel(R) PRO/1000 Network Connection [ 3678.826627] e1000 0000:09:04.0: PCI->APIC IRQ transform: INT A -> IRQ 82 [ 3679.093266] e1000 0000:09:04.0: Receive Descriptors set to 4096 [ 3679.093271] e1000 0000:09:04.0: Checksum Offload Disabled [ 3679.093275] e1000 0000:09:04.0: Flow Control Disabled [ 3679.130239] e1000 0000:09:04.0: eth2: (PCI-X:133MHz:64-bit) 00:04:23:e1:77:6a [ 3679.130246] e1000 0000:09:04.0: eth2: Intel(R) PRO/1000 Network Connection [ 3679.130449] e1000 0000:09:04.1: PCI->APIC IRQ transform: INT B -> IRQ 83 [ 3679.397312] e1000 0000:09:04.1: Receive Descriptors set to 4096 [ 3679.397318] e1000 0000:09:04.1: Checksum Offload Disabled [ 3679.397321] e1000 0000:09:04.1: Flow Control Disabled [ 3679.434350] e1000 0000:09:04.1: eth3: (PCI-X:133MHz:64-bit) 00:04:23:e1:77:6b [ 3679.434360] e1000 0000:09:04.1: eth3: Intel(R) PRO/1000 Network Connection [ 3679.434553] e1000 0000:0a:03.0: PCI->APIC IRQ transform: INT A -> IRQ 77 [ 3679.704072] e1000 0000:0a:03.0: Receive Descriptors set to 4096 [ 3679.704077] e1000 0000:0a:03.0: Checksum Offload Disabled [ 3679.704081] e1000 0000:0a:03.0: Flow Control Disabled [ 3679.738364] e1000 0000:0a:03.0: eth4: (PCI:33MHz:64-bit) 00:04:23:b6:35:6c [ 3679.738371] e1000 0000:0a:03.0: eth4: Intel(R) PRO/1000 Network Connection [ 3679.738538] e1000 0000:0a:03.1: PCI->APIC IRQ transform: INT B -> IRQ 78 [ 3680.046060] e1000 0000:0a:03.1: eth5: (PCI:33MHz:64-bit) 00:04:23:b6:35:6d [ 3680.046067] e1000 0000:0a:03.1: eth5: Intel(R) PRO/1000 Network Connection [ 3682.132415] e1000: eth0 NIC Link is Up 100 Mbps Half Duplex, Flow Control: None [ 3682.224423] e1000: eth1 NIC Link is Up 100 Mbps Half Duplex, Flow Control: None [ 3682.316385] e1000: eth2 NIC Link is Up 100 Mbps Half Duplex, Flow Control: None [ 3682.408391] e1000: eth3 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: None [ 3682.500396] e1000: eth4 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: None [ 3682.708401] e1000: eth5 NIC Link is Up 1000 Mbps Full Duplex, Flow Control: RX At first I thought it was the NIC drivers but I'm not so sure. I really have no idea where else to look at the moment. Any help is greatly appreciated as I'm struggling with this. If you need more information just ask. Thanks! [1]http://www.cs.fsu.edu/~baker/devices/lxr/http/source/linux/Documentation/networking/e1000.txt?v=2.6.11.8 [2] http://support.dell.com/support/edocs/systems/pe2850/en/ug/t1390aa.htm

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• Using thread inter-communication to increase my server app's IO throughput; not sure how

  - by Howard Guo

  My server application creates a new thread for each incoming connection. Incoming requests are serialized in a BlockingQueue. There is one worker thread taking items from the queue, produce a response and send the response through socket. I have noticed a throughput issue: Currently, worker thread is responsible of sending the response message through socket, thus severely wasting processing power and throughput. I am considering: rather than sending the response itself, why not telling network IO threads to send the response? However, when I think about thread inter-communication, I cannot yet figure out how to approach it: Worker thread will produce a response, but how will it inform the response message to IO thread? Is there a standard/best practice? Thank you.

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• SQL SERVER – ASYNC_IO_COMPLETION – Wait Type – Day 11 of 28

  - by pinaldave

  For any good system three things are vital: CPU, Memory and IO (disk). Among these three, IO is the most crucial factor of SQL Server. Looking at real-world cases, I do not see IT people upgrading CPU and Memory frequently. However, the disk is often upgraded for either improving the space, speed or throughput. Today we will look at another IO-related wait type. From Book On-Line: Occurs when a task is waiting for I/Os to finish. ASYNC_IO_COMPLETION Explanation: Any tasks are waiting for I/O to finish. If by any means your application that’s connected to SQL Server is processing the data very slowly, this type of wait can occur. Several long-running database operations like BACKUP, CREATE DATABASE, ALTER DATABASE or other operations can also create this wait type. Reducing ASYNC_IO_COMPLETION wait: When it is an issue related to IO, one should check for the following things associated to IO subsystem: Look at the programming and see if there is any application code which processes the data slowly (like inefficient loop, etc.). Note that it should be re-written to avoid this  wait type. Proper placing of the files is very important. We should check the file system for proper placement of the files – LDF and MDF on separate drive, TempDB on another separate drive, hot spot tables on separate filegroup (and on separate disk), etc. Check the File Statistics and see if there is a higher IO Read and IO Write Stall SQL SERVER – Get File Statistics Using fn_virtualfilestats. Check event log and error log for any errors or warnings related to IO. If you are using SAN (Storage Area Network), check the throughput of the SAN system as well as configuration of the HBA Queue Depth. In one of my recent projects, the SAN was performing really badly and so the SAN administrator did not accept it. After some investigations, he agreed to change the HBA Queue Depth on the development setup (test environment). As soon as we changed the HBA Queue Depth to quite a higher value, there was a sudden big improvement in the performance. It is very likely to happen that there are no proper indexes on the system and yet there are lots of table scans and heap scans. Creating proper index can reduce the IO bandwidth considerably. If SQL Server can use appropriate cover index instead of clustered index, it can effectively reduce lots of CPU, Memory and IO (considering cover index has lesser columns than cluster table and all other; it depends upon the situation). You can refer to the following two articles I wrote that talk about how to optimize indexes: Create Missing Indexes Drop Unused Indexes Checking Memory Related Perfmon Counters SQLServer: Memory Manager\Memory Grants Pending (Consistent higher value than 0-2) SQLServer: Memory Manager\Memory Grants Outstanding (Consistent higher value, Benchmark) SQLServer: Buffer Manager\Buffer Hit Cache Ratio (Higher is better, greater than 90% for usually smooth running system) SQLServer: Buffer Manager\Page Life Expectancy (Consistent lower value than 300 seconds) Memory: Available Mbytes (Information only) Memory: Page Faults/sec (Benchmark only) Memory: Pages/sec (Benchmark only) Checking Disk Related Perfmon Counters Average Disk sec/Read (Consistent higher value than 4-8 millisecond is not good) Average Disk sec/Write (Consistent higher value than 4-8 millisecond is not good) Average Disk Read/Write Queue Length (Consistent higher value than benchmark is not good) Read all the post in the Wait Types and Queue series. Note: The information presented here is from my experience and there is no way that I claim it to be accurate. I suggest reading Book OnLine for further clarification. All the discussions of Wait Stats in this blog are generic and vary from system to system. It is recommended that you test this on a development server before implementing it to a production server. Reference: Pinal Dave (http://blog.SQLAuthority.com) Filed under: Pinal Dave, PostADay, SQL, SQL Authority, SQL Query, SQL Scripts, SQL Server, SQL Tips and Tricks, SQL Wait Stats, SQL Wait Types, T SQL, Technology

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• Question marks showing in ls of directory. IO errors too.

  - by jaymoo

  Has anyone seen this before? I've got a raid 5 mounted on my server and for whatever reason it started showing this: jason@box2:/mnt/raid1/cra$ ls -alh ls: cannot access e6eacc985fea729b2d5bc74078632738: Input/output error ls: cannot access 257ad35ee0b12a714530c30dccf9210f: Input/output error total 0 drwxr-xr-x 5 root root 123 2009-08-19 16:33 . drwxr-xr-x 3 root root 16 2009-08-14 17:15 .. ?????????? ? ? ? ? ? 257ad35ee0b12a714530c30dccf9210f drwxr-xr-x 3 root root 57 2009-08-19 16:58 9c89a78e93ae6738e01136db9153361b ?????????? ? ? ? ? ? e6eacc985fea729b2d5bc74078632738 The md5 strings are actual directory names and not part of the error. The question marks are odd, and any directory with a question mark throws an io error when you attempt to use/delete/etc it. I was unable to umount the drive due to "busy". Rebooting the server "fixed" it but it was throwing some raid errors on shutdown. I have configured two raid 5 arrays and both started doing this on random files. Both are using the following config: mkfs.xfs -l size=128m -d agcount=32 mount -t xfs -o noatime,logbufs=8 Nothing too fancy, but part of an optimized config for this box. We're not partitioning the drives and that was suggested as a possible issue. Could this be the culprit?

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• StackOverFlowError while creating Mac object on AS400/Java

  - by Prasanna K Rao

  Hello all, I am a newbie to AS400-Java programming. I am trying to create my first program to test the implementation of Message Authentication Code (MAC). I am trying to use the HMACSHA1 hash function. My (Java 1.4) program runs fine on a dev box (V5R4).But fails terribly on the QA box (V5R3). My program is as below: ===================================================== import java.security.InvalidKeyException; import java.security.NoSuchAlgorithmException; import java.security.Security; import java.security.Provider; import javax.crypto.Mac; import javax.crypto.spec.SecretKeySpec; import javax.crypto.SecretKey; public class Test01 { private static final String HMAC_SHA1_ALGORITHM = "HmacSHA1"; public static void main (String [] arguments) { byte[] key = { 1,2,3,4,5,6,7,8}; SecretKeySpec SHA1key = new SecretKeySpec(key, "HmacSHA1"); Mac hmac; String strFinalRslt = ""; try { hmac = Mac.getInstance("HmacSHA1"); hmac.init(SHA1key); byte[] result = hmac.doFinal(); strFinalRslt = toHexString(result); }catch (NoSuchAlgorithmException e) { // TODO Auto-generated catch block e.printStackTrace(); }catch (InvalidKeyException e) { // TODO Auto-generated catch block e.printStackTrace(); }catch(StackOverflowError e){ e.printStackTrace(); } System.out.println(strFinalRslt); System.out.println("All done!!!"); } public static byte[] fromHexString ( String s ) { int stringLength = s.length(); if ( (stringLength & 0x1) != 0 ) { throw new IllegalArgumentException ( "fromHexString requires an even number of hex characters" ); } byte[] b = new byte[stringLength / 2]; for ( int i=0,j=0; i 4] ); //look up low nibble char sb.append( hexChar [b[i] & 0x0f] ); } return sb.toString(); } static char[] hexChar = { '0' , '1' , '2' , '3' , '4' , '5' , '6' , '7' , '8' , '9' , 'a' , 'b' , 'c' , 'd' , 'e' , 'f'}; } This program compiles fine and gets the correct response on my win-xp client and also my dev box. But, fails with the following error on the QA box: java.lang.StackOverflowError at java.lang.Throwable.(Throwable.java:180) at java.lang.Error.(Error.java:37) at java.lang.StackOverflowError.(StackOverflowError.java:24) at java.io.Os400FileSystem.list(Native method) at java.io.File.list(File.java:922) at javax.crypto.b.e(Unknown source) at javax.crypto.b.a(Unknown source) at javax.crypto.b.c(Unknown source) at javax.crypto.b£0.run(Unknown source) at javax.crypto.b.(Unknown source) at javax.crypto.Mac.getInstance(Unknown source) I have verified the java.security file and entry corresponding to the jce files are all ok. The DMPJVM command gives me the following response: Thu Jun 03 12:25:34 E Java Virtual Machine Information 016822/QPGMR/11111 ........................................................................ . Classpath . ........................................................................ java.version=1.4 sun.boot.class.path=/QIBM/ProdData/OS400/Java400/jdk/lib/jdkptf14.zip:/QIBM /ProdData/OS400/Java400/ext/ibmjssefw.jar:/QIBM/ProdData/CAP/ibmjsseprovide r.jar:/QIBM/ProdData/OS400/Java400/ext/ibmjsseprovider2.jar:/QIBM/ProdData/ OS400/Java400/ext/ibmpkcs11impl.jar:/QIBM/ProdData/CAP/ibmjssefips.jar:/QIB M/ProdData/OS400/Java400/jdk/lib/IBMiSeriesJSSE.jar:/QIBM/ProdData/OS400/Ja va400/jdk/lib/jce.jar:/QIBM/ProdData/OS400/Java400/jdk/lib/jaas.jar:/QIBM/P rodData/OS400/Java400/jdk/lib/ibmcertpathfw.jar:/QIBM/ProdData/OS400/Java40 0/jdk/lib/ibmcertpathprovider.jar:/QIBM/ProdData/OS400/Java400/ext/ibmpkcs. jar:/QIBM/ProdData/OS400/Java400/jdk/lib/ibmjgssfw.jar:/QIBM/ProdData/OS400 /Java400/jdk/lib/ibmjgssprovider.jar:/QIBM/ProdData/OS400/Java400/jdk/lib/s ecurity.jar:/QIBM/ProdData/OS400/Java400/jdk/lib/charsets.jar:/QIBM/ProdDat a/OS400/Java400/jdk/lib/resources.jar:/QIBM/ProdData/OS400/Java400/jdk/lib/ rt.jar:/QIBM/ProdData/OS400/Java400/jdk/lib/sunrsasign.jar:/QIBM/ProdData/O S400/Java400/ext/IBMmisc.jar:/QIBM/ProdData/Java400/ java.class.path=/myhome/lib/commons-codec-1.3.jar:/myhome/lib/commons-httpc lient-3.1.jar:/myhome/lib/commons-logging-1.1.jar:/myhome/lib/log4j-1.2.15.jar:/myhome/lib/log4j-core.jar ; java.ext.dirs=/QIBM/ProdData/OS400/Java400/jdk/lib/ext:/QIBM/UserData/Java4 00/ext:/QIBM/ProdData/Java400/jdk14/lib/ext java.library.path=/QSYS.LIB/ROBOTLIB.LIB:/QSYS.LIB/QTEMP.LIB:/QSYS.LIB/ODIP GM.LIB:/QSYS.LIB/QGPL.LIB ........................................................................ . Garbage Collection . ........................................................................ Garbage collector parameters Initial size: 16384 K Max size: 240000000 K Current values Heap size: 437952 K Garbage collections: 58 Additional values JIT heap size: 53824 K JVM heap size: 55752 K Last GC cycle time: 1333 ms ........................................................................ . Thread information . ........................................................................ Information for 4 thread(s) of 4 thread(s) processed Thread: 00000004 Thread-0 TDE: B00380000BAA0000 Thread priority: 5 Thread status: Running Thread group: main Runnable: java/lang/Thread Stack: java/io/Os400FileSystem.list(Ljava/io/File;)[Ljava/lang/String;+0 (Os400FileSystem.java:0) java/io/File.list()[Ljava/lang/String;+19 (File.java:922) javax/crypto/b.e()[B+127 (:0) javax/crypto/b.a(Ljava/security/cert/X509Certificate;)V+7 (:0) javax/crypto/b.access$500(Ljava/security/cert/X509Certificate;)V+1 (:0) javax/crypto/b$0.run()Ljava/lang/Object;+98 (:0) javax/crypto/b.()V+507 (:0) javax/crypto/Mac.getInstance(Ljava/lang/String;)Ljavax/crypto/Mac;+10 (:0) Locks: None Thread: 00000007 jitcompilethread TDE: B00380000BD58000 Thread priority: 5 Thread status: Java wait Thread group: system Runnable: java/lang/Thread Stack: None Locks: None Thread: 00000005 Reference Handler TDE: B00380000BAAC000 Thread priority: 10 Thread status: Waiting Wait object: java/lang/ref/Reference$Lock Thread group: system Runnable: java/lang/ref/Reference$ReferenceHandler Stack: java/lang/Object.wait()V+1 (Object.java:452) java/lang/ref/Reference$ReferenceHandler.run()V+47 (Reference.java:169) Locks: None Thread: 00000006 Finalizer TDE: B00380000BAB3000 Thread priority: 8 Thread status: Waiting Wait object: java/lang/ref/ReferenceQueue$Lock Thread group: system Runnable: java/lang/ref/Finalizer$FinalizerThread Stack: java/lang/ref/ReferenceQueue.remove(J)Ljava/lang/ref/Reference;+43 (ReferenceQueue.java:111) java/lang/ref/ReferenceQueue.remove()Ljava/lang/ref/Reference;+1 (ReferenceQueue.java:127) java/lang/ref/Finalizer$FinalizerThread.run()V+3 (Finalizer.java:171) Locks: None ........................................................................ . Class loader information . ........................................................................ 0 Default class loader 1 sun/reflect/DelegatingClassLoader 2 sun/misc/Launcher$ExtClassLoader ........................................................................ . GC heap information . ........................................................................ Loader Objects Class name ------ ------- ---------- 0 1493 [C 0 2122181 java/lang/String 0 47 [Ljava/util/Hashtable$Entry; 0 68 [Ljava/lang/Object; 0 1016 java/lang/Class 0 31 java/util/HashMap 0 37 java/util/Hashtable 0 2 java/lang/ThreadGroup 0 2 java/lang/RuntimePermission 0 2 java/lang/ref/ReferenceQueue$Null 0 5 java/lang/ref/ReferenceQueue 0 50 java/util/Vector 0 4 java/util/Stack 0 3 sun/misc/SoftCache 0 1 [Ljava/lang/ThreadGroup; 0 5 [Ljava/io/ObjectStreamField; 0 1 sun/reflect/ReflectionFactory 0 7 java/lang/ref/ReferenceQueue$Lock 0 10 java/lang/Object 0 1 java/lang/String$CaseInsensitiveComparator 0 1 java/util/Hashtable$EmptyEnumerator 0 1 java/util/Hashtable$EmptyIterator 0 33 [Ljava/util/HashMap$Entry; 0 19210 [J 0 1 sun/nio/cs/StandardCharsets 0 5 java/util/TreeMap 0 1075 java/util/TreeMap$Entry 0 469 [Ljava/lang/String; 0 1 java/lang/StringBuffer 0 2 java/io/FileInputStream 0 2 java/io/FileOutputStream 0 2 java/io/BufferedOutputStream 0 1 java/lang/reflect/ReflectPermission 0 1 [[Ljava/lang/ref/SoftReference; 0 2 [Ljava/lang/ref/SoftReference; 0 2 sun/nio/cs/Surrogate$Parser 0 3 sun/misc/Signal 0 1 [Ljava/io/File; 0 6 java/io/File 0 1 java/util/BitSet 0 17 sun/reflect/NativeConstructorAccessorImpl 0 2 java/net/URLClassLoader$ClassFinder 0 12 java/util/ArrayList 0 32 java/io/RandomAccessFile 0 16 java/lang/Thread 0 1 java/lang/ref/Reference$ReferenceHandler 0 1 java/lang/ref/Finalizer$FinalizerThread 0 266 [B 0 2 java/util/Properties 0 71 java/lang/ref/Finalizer 0 2 com/ibm/nio/cs/DirectEncoder 0 38 java/lang/reflect/Constructor 0 33 java/util/jar/JarFile 0 19200 java/lang/StackOverflowError 0 5 java/security/AccessControlContext 0 2 [Ljava/lang/Thread; 0 4 java/lang/OutOfMemoryError 0 1065 java/util/Hashtable$Entry 0 1 java/io/BufferedInputStream 0 2 java/io/PrintStream 0 2 java/io/OutputStreamWriter 0 428 [I 0 3 java/lang/ClassLoader$NativeLibrary 0 25 java/util/Locale 0 3 sun/misc/URLClassPath 0 30 java/util/zip/Inflater 0 612 java/util/HashMap$Entry 0 2 java/io/FilePermission 0 10 java/io/ObjectStreamField 0 1 java/security/BasicPermissionCollection 0 2 java/security/ProtectionDomain 0 1 java/lang/Integer$1 0 1 java/lang/ref/Reference$Lock 0 1 java/lang/Shutdown$Lock 0 1 java/lang/Runtime 0 36 java/io/FileDescriptor 0 1 java/lang/Long$1 0 202 java/lang/Long 0 3 java/lang/ThreadLocal 0 3 java/nio/charset/CodingErrorAction 0 2 java/nio/charset/CoderResult 0 1 java/nio/charset/CoderResult$1 0 1 java/nio/charset/CoderResult$2 0 1 sun/misc/Unsafe 0 2 java/nio/ByteOrder 0 1 java/io/Os400FileSystem 0 3 java/lang/Boolean 0 1 java/lang/Terminator$1 0 23 java/lang/Integer 0 2 sun/misc/NativeSignalHandler 0 1 sun/misc/Launcher$Factory 0 1 sun/misc/Launcher 0 53 [Ljava/lang/Class; 0 1 java/lang/reflect/ReflectAccess 0 18 sun/reflect/DelegatingConstructorAccessorImpl 0 1 sun/net/www/protocol/file/Handler 0 3 java/util/HashSet 0 3 sun/net/www/protocol/jar/Handler 0 1 java/util/jar/JavaUtilJarAccessImpl 0 1 java/net/UnknownContentHandler 0 2 [Ljava/security/Principal; 0 10 [Ljava/security/cert/Certificate; 0 2 sun/misc/AtomicLongCSImpl 0 3 sun/reflect/DelegatingMethodAccessorImpl 0 1 sun/security/util/ByteArrayLexOrder 0 1 sun/security/util/ByteArrayTagOrder 0 7 sun/security/x509/CertificateVersion 0 7 sun/security/x509/CertificateSerialNumber 0 7 sun/security/x509/SerialNumber 0 7 sun/security/x509/CertificateAlgorithmId 0 7 sun/security/x509/CertificateIssuerName 0 60 sun/security/x509/RDN 0 60 [Lsun/security/x509/AVA; 0 67 sun/security/util/DerInputStream 0 3 [Ljava/math/BigInteger; 0 2 com/ibm/nio/cs/Converter 0 2 sun/nio/cs/StreamEncoder$CharsetSE 0 35 java/lang/ref/SoftReference 0 2 java/nio/HeapByteBuffer 0 2 java/io/BufferedWriter 0 33 sun/misc/URLClassPath$JarLoader 0 4 java/lang/ThreadLocal$ThreadLocalMap$Entry 0 76 java/net/URL 0 1 sun/misc/Launcher$ExtClassLoader 0 1 sun/misc/Launcher$AppClassLoader 0 4 java/lang/Throwable 0 7 java/lang/reflect/Method 0 2 sun/misc/URLClassPath$FileLoader 0 2 java/security/CodeSource 0 2 java/security/Permissions 0 2 java/io/FilePermissionCollection 0 1 java/lang/ThreadLocal$ThreadLocalMap 0 1 javax/crypto/spec/SecretKeySpec 0 17 java/util/jar/Attributes$Name 0 1 [Ljava/lang/ThreadLocal$ThreadLocalMap$Entry; 0 1 java/security/SecureRandom 0 2 sun/security/provider/Sun 0 1 java/util/jar/JarFile$JarFileEntry 0 1 java/util/jar/JarVerifier 0 3 sun/reflect/NativeMethodAccessorImpl 0 116 sun/security/util/ObjectIdentifier 0 1 java/lang/Package 0 2 [S 0 104 java/math/BigInteger 0 20 sun/security/x509/AlgorithmId 0 14 sun/security/x509/X500Name 0 14 [Lsun/security/x509/RDN; 0 60 sun/security/x509/AVA 0 67 sun/security/util/DerValue 0 67 sun/security/util/DerInputBuffer 0 21 sun/security/x509/AVAKeyword 0 6 sun/security/x509/X509CertImpl 0 7 sun/security/x509/X509CertInfo 0 1 [Lsun/security/util/ObjectIdentifier; 0 1 [[Ljava/lang/Byte; 0 3 [[B 0 7 sun/security/provider/DSAPublicKey 0 7 sun/security/x509/AuthorityKeyIdentifierExtension 0 12 [Ljava/lang/Byte; 0 14 java/lang/Byte 0 7 sun/security/x509/CertificateSubjectName 0 7 sun/security/x509/CertificateX509Key 0 14 sun/security/x509/KeyIdentifier 0 4 [Z 0 5 sun/text/Normalizer$Mode 0 7 sun/security/x509/CertificateValidity 0 14 java/util/Date 0 7 sun/security/provider/DSAParameters 0 7 sun/security/util/BitArray 0 7 sun/security/x509/CertificateExtensions 0 7 java/security/AlgorithmParameters 0 7 sun/security/x509/SubjectKeyIdentifierExtension 0 5 sun/security/x509/BasicConstraintsExtension 0 2 sun/security/x509/KeyUsageExtension 0 1 sun/text/CompactCharArray 0 1 sun/text/CompactByteArray 0 1 sun/net/www/protocol/jar/JarFileFactory 0 1 java/util/Collections$EmptySet 0 1 java/util/Collections$EmptyList 0 1 java/util/Collections$ReverseComparator 0 1 com/ibm/security/jgss/i18n/PropertyResource 0 1 javax/crypto/b$0 0 1 sun/security/provider/X509Factory 0 1 sun/reflect/BootstrapConstructorAccessorImpl 1 1 sun/reflect/GeneratedConstructorAccessor3202134454 2 1 com/ibm/crypto/provider/IBMJCE 0 6 java/util/ResourceBundle$LoaderReference 0 1 [Lsun/security/x509/NetscapeCertTypeExtension$MapEntry; 0 1 com/sun/rsajca/Provider 0 1 com/ibm/security/cert/IBMCertPath 0 1 com/ibm/as400/ibmonly/net/ssl/Provider 0 1 com/ibm/jsse/IBMJSSEProvider 0 1 com/ibm/security/jgss/IBMJGSSProvider 0 5 org/ietf/jgss/Oid 0 1 java/util/PropertyResourceBundle 0 7 java/util/ResourceBundle$ResourceCacheKey 0 2 sun/net/www/protocol/jar/URLJarFile 0 6 sun/misc/SoftCache$ValueCell 0 1 java/util/Random 0 1 java/util/Collections$EmptyMap 0 112 com/ibm/security/util/ObjectIdentifier 0 5 java/security/Security$ProviderProperty 0 1 java/security/cert/CertificateFactory 0 1 sun/security/provider/SecureRandom 0 2 java/security/MessageDigest$Delegate 0 2 sun/security/provider/SHA 0 1 sun/util/calendar/ZoneInfo 0 4 com/ibm/security/x509/X500Name 0 2 [Ljava/security/cert/X509Certificate; 0 1 sun/reflect/DelegatingClassLoader 0 1 sun/security/x509/NetscapeCertTypeExtension 0 7 sun/security/x509/NetscapeCertTypeExtension$MapEntry 0 3 [[Ljava/lang/String; 0 3 java/util/Arrays$ArrayList 0 7 com/ibm/security/x509/NetscapeCertTypeExtension$MapEntry 0 1 com/ibm/security/validator/EndEntityChecker 0 1 java/util/AbstractList$Itr 0 1 com/ibm/security/util/ByteArrayLexOrder 0 1 com/ibm/security/util/ByteArrayTagOrder 0 18 [Lcom/ibm/security/x509/AVA; 0 18 com/ibm/security/util/DerInputStream 0 5 com/ibm/security/util/text/Normalizer$Mode 0 1 com/ibm/security/validator/SimpleValidator 0 1 [Lcom/ibm/security/x509/NetscapeCertTypeExtension$MapEntry; 0 4 [Lcom/ibm/security/x509/RDN; 0 1 java/util/Hashtable$Enumerator 0 4 java/util/LinkedHashMap$Entry 0 1 sun/text/resources/LocaleElements 0 1 sun/text/resources/LocaleElements_en 0 22 com/ibm/security/x509/AVAKeyword 0 4 javax/security/auth/x500/X500Principal 0 18 com/ibm/security/x509/RDN 0 18 com/ibm/security/x509/AVA 0 18 com/ibm/security/util/DerInputBuffer 0 18 com/ibm/security/util/DerValue 0 1 com/ibm/security/util/text/CompactCharArray 0 1 com/ibm/security/util/text/CompactByteArray 0 2 java/util/LinkedHashMap 0 1 java/net/InetAddress$1 0 2 [Ljava/net/InetAddress; 0 2 java/net/InetAddress$Cache 0 1 java/net/Inet4AddressImpl 0 3 java/net/Inet4Address 0 2 java/net/InetAddress$CacheEntry ........................................................................ . Global registry information . ........................................................................ Loader Objects Class name ------ ------- ---------- 0 23 [C 0 1017 java/lang/Class 0 1 java/lang/ref/Reference$ReferenceHandler 0 1 java/lang/ref/Finalizer$FinalizerThread 0 1 sun/misc/Launcher$AppClassLoader 0 32 java/io/RandomAccessFile 0 32 [B Can someone please advise me? Thanks a lot, Prasanna

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• VB.NET Debug Error

  - by Daniel

  I get this error "Illegal characters in path" for this code: Dim strm As System.IO.FileStream strm = New System.IO.FileStream(filepath, IO.FileMode.Open, IO.FileAccess.Read)

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• Is there any way that an export-to-Excel function can be scalable?

  - by MusiGenesis

  Summary: ASP.Net website with a couple hundred users. Data is exported to Excel files which can be relatively large (~5 MB). In the pilot phase (just a few users), we are already seeing occasional errors on the server in the exporting method. Here's the stack trace: System.Web.HttpUnhandledException: Exception of type 'System.Web.HttpUnhandledException' was thrown. --- System.OutOfMemoryException: Exception of type 'System.OutOfMemoryException' was thrown. at System.IO.MemoryStream.set_Capacity(Int32 value) at System.IO.MemoryStream.EnsureCapacity(Int32 value) at System.IO.MemoryStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Packaging.TrackingMemoryStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Packaging.SparseMemoryStream.WriteAndCollapseBlocks(Byte[ ] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Packaging.SparseMemoryStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Packaging.CompressEmulationStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Packaging.CompressStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Zip.ProgressiveCrcCalculatingStream.Write(Byte[] buffer, Int32 offset, Int32 count) at MS.Internal.IO.Zip.ZipIOModeEnforcingStream.Write(Byte[] buffer, Int32 offset, Int32 count) at System.IO.StreamWriter.Flush(Boolean flushStream, Boolean flushEncoder) at System.IO.StreamWriter.Write(String value) at System.Xml.XmlTextEncoder.Write(String text) at System.Xml.XmlTextWriter.WriteString(String text) at System.Xml.XmlText.WriteTo(XmlWriter w) at System.Xml.XmlAttribute.WriteContentTo(XmlWriter w) at System.Xml.XmlAttribute.WriteTo(XmlWriter w) at System.Xml.XmlElement.WriteTo(XmlWriter w) at System.Xml.XmlElement.WriteContentTo(XmlWriter w) at System.Xml.XmlElement.WriteTo(XmlWriter w) at System.Xml.XmlElement.WriteContentTo(XmlWriter w) at System.Xml.XmlElement.WriteTo(XmlWriter w) at System.Xml.XmlElement.WriteContentTo(XmlWriter w) at System.Xml.XmlElement.WriteTo(XmlWriter w) at System.Xml.XmlDocument.WriteContentTo(XmlWriter xw) at System.Xml.XmlDocument.WriteTo(XmlWriter w) at System.Xml.XmlDocument.Save(Stream outStream) at OfficeOpenXml.ExcelWorksheet.Save() in C:\temp\XXXXXXXXXX\ExcelPackage\ExcelWorksheet.cs:line 605 at OfficeOpenXml.ExcelWorkbook.Save() in C:\temp\XXXXXXXXXX\ExcelPackage\ExcelWorkbook.cs:line 439 at OfficeOpenXml.ExcelPackage.Save() in C:\temp\XXXXXXXXXX\ExcelPackage\ExcelPackage.cs:line 348 at Framework.Exporting.Business.ExcelExport.BuildReport(HttpContext context) at WebUserControl.BtnXLS_Click(Object sender, EventArgs e) in C:\TEMP\XXXXXXXXXX\XXXXXXXXXX\OneList\UserControls\TicketReportExporter. ascx.cs:line 108 at System.Web.UI.WebControls.Button.OnClick(EventArgs e) at System.Web.UI.WebControls.Button.RaisePostBackEvent(String eventArgument) at System.Web.UI.WebControls.Button.System.Web.UI.IPostBackEventHandler.Rai sePostBackEvent(String eventArgument) at System.Web.UI.Page.RaisePostBackEvent(IPostBackEventHandler sourceControl, String eventArgument) at System.Web.UI.Page.RaisePostBackEvent(NameValueCollection postData) at System.Web.UI.Page.ProcessRequestMain(Boolean includeStagesBeforeAsyncPoint, Boolean includeStagesAfterAsyncPoint) --- End of inner exception stack trace --- at System.Web.UI.Page.HandleError(Exception e) at System.Web.UI.Page.ProcessRequestMain(Boolean includeStagesBeforeAsyncPoint, Boolean includeStagesAfterAsyncPoint) at System.Web.UI.Page.ProcessRequest(Boolean includeStagesBeforeAsyncPoint, Boolean includeStagesAfterAsyncPoint) at System.Web.UI.Page.ProcessRequest() at System.Web.UI.Page.ProcessRequestWithNoAssert(HttpContext context) at System.Web.UI.Page.ProcessRequest(HttpContext context) at ASP.XXXXXXXXXXX_aspx.ProcessRequest(HttpContext context) in c:\WINDOWS\Microsoft.NET\Framework\v2.0.50727\Temporary ASP.NET Files\XXXX\cdf32a52\d1a5eabd\App_Web_enxdwlks.1.cs:line 0 at System.Web.HttpApplication.CallHandlerExecutionStep.System.Web.HttpAppli cation.IExecutionStep.Execute() at System.Web.HttpApplication.ExecuteStep(IExecutionStep step, Boolean& completedSynchronously) Even aside from this particular problem, in general exporting to Excel requires the instantiation of huge Excel objects on the server for each request, which I've always assumed to mean disqualifies Excel for "serious" work on a highly-loaded server. Is there any general way to export to Excel in a "light-weight" manner? Would simply streaming the data into a CSV file work for this?

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• How can I link two Java serialised objects back together?

  - by Kidburla

  Sometimes (quite a lot, actually) we get a situation in Java where two objects are pointing to the same thing. Now if we serialise these separately it is quite appropriate that the serialised forms have separate copies of the object as it should be possible to open one without the other. However if we now deserialise them both, we find that they are still separated. Is there any way to link them back together? Example follows. public class Example { private static class ContainerClass implements java.io.Serializable { private ReferencedClass obj; public ReferencedClass get() { return obj; } public void set(ReferencedClass obj) { this.obj = obj; } } private static class ReferencedClass implements java.io.Serializable { private int i = 0; public int get() { return i; } public void set(int i) { this.i = i; } } public static void main(String[] args) throws Exception { //Initialise the classes ContainerClass test1 = new ContainerClass(); ContainerClass test2 = new ContainerClass(); ReferencedClass ref = new ReferencedClass(); //Make both container class point to the same reference test1.set(ref); test2.set(ref); //This does what we expect: setting the integer in one (way of accessing the) referenced class sets it in the other one test1.get().set(1234); System.out.println(Integer.toString(test2.get().get())); //Now serialise the container classes java.io.ObjectOutputStream os = new java.io.ObjectOutputStream(new java.io.FileOutputStream("C:\\Users\\Public\\test1.ser")); os.writeObject(test1); os.close(); os = new java.io.ObjectOutputStream(new java.io.FileOutputStream("C:\\Users\\Public\\test2.ser")); os.writeObject(test2); os.close(); //And deserialise them java.io.ObjectInputStream is = new java.io.ObjectInputStream(new java.io.FileInputStream("C:\\Users\\Public\\test1.ser")); ContainerClass test3 = (ContainerClass)is.readObject(); is.close(); is = new java.io.ObjectInputStream(new java.io.FileInputStream("C:\\Users\\Public\\test2.ser")); ContainerClass test4 = (ContainerClass)is.readObject(); is.close(); //We expect the same thing as before, and would expect a result of 4321, but this doesn't happen as the referenced objects are now separate instances test3.get().set(4321); System.out.println(Integer.toString(test4.get().get())); } }

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• Bioperl, equivalent of IO::ScalarArray for array of Seq objects?

  - by Ryan Thompson

  In perl, we have IO::ScalarArray for treating the elements of an array like the lines of a file. In BioPerl, we have Bio::SeqIO, which can produce a filehandle that reads and writes Bio::Seq objects instead of strings representing lines of text. I would like to do a combination of the two: I would like to obtain a handle that reads successive Bio::Seq objects from an array of such objects. Is there any way to do this? Would it be trivial for me to implement a module that does this? My reason for wanting this is that I would like to be able to write a subroutine that accepts either a Bio::SeqIO handle or an array of Bio::Seq objects, and I'd like to avoid writing separate loops based on what kind of input I get. Perhaps the following would be better than writing my own IO module? sub process_sequences { my $input = $_[0]; # read either from array of Bio::Seq or from Bio::SeqIO my $nextseq; if (ref $input eq 'ARRAY') { my $pos = 0 $nextseq = sub { return $input->[$pos++] if $pos < @$input}; } } else { $nextseq = sub { $input->getline(); } } while (my $seq = $nextseq->()) { do_cool_stuff_with($seq) } }

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