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  • Problem with executing dssp (secondary structure assignment)

    - by Mana
    I followed a previous post to install dssp on ubuntu How to install dssp (secondary structure assignments) under 12.04? After the installation I tried to execute dssp which was in /usr/local/bin/dssp But it gave me the following error bash: /usr/local/bin/dssp: cannot execute binary file Also I tried to analyse some trajectory files from a simulation using the code do_dssp -s md.tpr -f traj.xtc But it also failed giving me the error below Reading file md.tpr, VERSION 4.5.5 (single precision) Reading file md.tpr, VERSION 4.5.5 (single precision) Segmentation fault (core dumped) Please post me a solution for this problem. Thank you!

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  • Most efficient way to rebuild a tree structure from data

    - by Ahsan
    Have a question on recursively populating JsTree using the .NET wrapper available via NuGet. Any help would be greatly appreciated. the .NET class JsTree3Node has a property named Children which holds a list of JsTree3Nodes, and the pre-existing table which contains the node structure looks like this NodeId ParentNodeId Data AbsolutePath 1 NULL News /News 2 1 Financial /News/Financial 3 2 StockMarket /News/Financial/StockMarket I have a EF data context from the the database, so my code currently looks like this. var parentNode = new JsTree3Node(Guid.NewGuid().ToString()); foreach(var nodeItem in context.Nodes) { parentNode.Children.Add(nodeItem.Data); // What is the most efficient logic to do this recursively? } as the inline comment says in the above code, what would be the most efficient way to load the JStree data on to the parentNode object. I can change the existing node table to suite the logic so feel free to suggest any changes to improve performance.

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  • Recovery from URL structure change?

    - by Dejan Pelzel
    in July this year, we have changed the URL structure of the website from: Post: domain.com/blog/post/986/dance/heart-beats-dance-video-by-chinatsu/ Category: domain.com/blog/index/cosplay/ to Post: domain.com/dance/heart-beats-dance-video-by-chinatsu-986/ Category: domain.com/cosplay/ Everything was (supposedly) properly redirected with 301 redirects and it first seemed that the traffic returned after a couple of days, but it has now been close to 2 months and things keep going worse although Google is slowly indexing the changes. What is worrying me even more is that the Pages crawled per day from Webmaster Tools started drastically dropping a few days ago and has just reached a new low in months (from over 2000 to 700). Should I be worried or will things sort out eventually?

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  • Organizing code for iOS app development

    - by KronoS
    I've been developing an app for the iOS platform, and as I've been going along, I've noticed that I've done a terrible job of keeping my files (.h, .m, .mm) organized. Is there any industry standards or best practices when it comes to organizing files for an iOS project? My files include custom classes (beside the view controllers), customized View Controllers, third-party content, code that works only on iOS 5.0+ and code that works on previous versions. What I'm looking for is a solution to keep things organized in a manner that others (or myself in years to come) can look at this and understand the basic structure of the application and not get lost in the multiple files found therein.

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  • Read only array, deep copy or retrieve copies one by one? (Performance and Memory)

    - by Arthur Wulf White
    In a garbage collection based system, what is the most effective way to handle a read only array if such a structure does not exist natively in the language. Is it better to return a copy of an array or allow other classes to retrieve copies of the objects stored in the array one by one? @JustinSkiles: It is not very broad. It is performance related and can actually be answered specifically for two general cases. You only need very few items: in this situation it's more effective to retrieve copies of the objects one by one. You wish to iterate over 30% or more objects. In this cases it is superior to retrieve all the array at once. This saves on functions calls. Function calls are very expansive when compared to reading directly from an array. A good specific answer could include performance, reading from an array and reading indirectly through a function. It is a simple performance related question.

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  • Structure gameobjects and call events

    - by waco001
    I'm working on a 2D tile based game in which the player interacts with other game objects (chests, AI, Doors, Houses etc...). The entire map will be stored in a file which I can read. When loading the tilemap, it will find any tile with the ID that represents a gameobject and store it in a hashmap (right data structure I think?). private static HashMap<Integer, Class<GameObject>> gameObjects = new HashMap<Integer, Class<GameObject>>(); How exactly would I go about calling, and checking for events? I figure that I would just call the update, render and input methods of each gameobject using the hashmap. Should I got towards a Minecraft/Bukkit approach (sorry only example I can think of), where the user registers an event, and it gets called whenever that event happens, and where should I go as in resources to learn about that type of programming, (Java, LWJGL). Or should I just loop through the entire hashmap looking for an event that fits? Thanks waco

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  • SEO URL structure for tag search on site

    - by Theo G
    I am looking to add tags to each product on my site e.g. brown, x products under £x, second hand x, refurbished x etc. Once you click these tags it will then search for other tags that are similar. I was thinking of using a url structure of www.site.com/tags/this%is%the%tag%name and then simply have a page that shows the results of all the products with that tag. I heard a while back that google generally ignores or downgrades anything with ‘search’ in the url and was wondering if anyone had any experience with this? Also, would you say /tags/ is a pretty valid destination or is it best to break it down and add more levels e.g. /product-type/product%variation Thanks in advance!

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  • How to setup an encrypted voip structure?

    - by strapakowsky
    What is the simplest way to set up a voip structure in a Linux machine with the following features: 1) Using free software 2) For computer-to-computer calls: end-to-end encryption set by the users, unpaid, no central authority (so skype is out) 3) For computer-to-phone calls: paid or unpaid, desirable encryption on the computer side if that is even possible 4) Ability to have a number to receive calls from regular phones My research concluded that the sip protocol is the most popular. However most discussions I've read on sip are too technical and I felt it discourages the regular user who wants to just click and talk. So I put the question above and created some separate questions about privacy with sip registrars, privacy with voip suppliers, what to look for in a sip registrar, what to look for in a voip provider. As for the software, I noticed most software either don't provide encryption (eg Ekiga) or the software doesn't work nicely and the project is abandoned (eg Twinkle), so no option seemed satisfying.

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  • SOLID Principles and code structure

    - by S-Unit
    My question is on SOLID principles, because I couldn't answer a question (beyond the obvious meaning of the various principles of SOLID) at an interview and it really bugs me. I have done a couple of days worth of digging around and have yet to come up with a satisfactory summary. The question was: If you were to look at a .Net project that I told you strictly followed SOLID principles, what would expect to see in terms of the project and code structure ? I sort of floundered around a bit, didn't really answer the question and then bombed out. Any help or thoughts will really be appreciated.

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  • Best place to install apps

    - by t3ch
    I am completely new to Ubuntu and I must say AskUbuntu and you folks are of great help. So now when I have started installing and playing with apps, my question is what is the best place to install/download apps? Like in Windows it usually goes under your C: drive and then you manage it under Program Files. Linux structure is quite different with a different folder hierarchy. I have attached the directory structure of my machine as well. I thought this question would help lot of beginners.

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  • Should package structure closely resemble class hierarchy?

    - by Panzercrisis
    Pretty simple question. Should package structure closely resemble class hierarchy? If so, how closely? Why or why not? For instance, let's say you've got class A and class B, plus class AFactory and class BFactory. You put class A and class B in the package com.something.elements, and you put AFactory and BFactory in com.something.elements.factories. AFactory and BFactory would be further down the hierarchy package-wise, but they'd be further up class-wise. Is this sort of thing a good idea or a bad idea?

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  • How are larger games organized?

    - by Matthew G.
    I'm using Java, but the language I'm using here is probably irrelevant. I'd like to create an economy based on an ancient civilization. I'm not sure how to design it. If I were working on a smaller game, like a copy of "Space Invaders", I'd have no problem structuring it like this. Game -Main Control Class --Graphics Class --Player Class --Enemy class I'd pass the graphics class to both the player and enemy class so they could call graphics functions. I don't understand how I'd do this for larger projects. Do I create a country class that contains a bunch of towns? Do the towns contain a lot building class, most contain classes of people? Do I make a path finding class that the player can access to get around? How exactly do I structure this and pass all these references around? Thanks.

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  • Dual boot Ubuntu 12.10 and Linux Mint 13

    - by user101693
    I know this question has been asked so many times, but I don't know what should I do in my case with those tutorials available everywhere. This is how my current situation looks like: Right now I'm using Linux Mint 13 Xfce installed with: 500MB of /boot 2GB of swap 15GB of / The rest of my space is /home with no space left in my hard drive And I just got a Ubuntu 12.10 live CD from my friend, and I intended to install it alongside my Linux Mint. And I want to select something else in the installation process. The question is: I want to use the same /home partition for Ubuntu and Linux Mint with same user but different directory because I don't want my configuration files conflict with each other. For example my username is Budiman and I want a directory named /home/budiman-Ubuntu for Ubuntu and /home/budiman-LinuxMint for Linux Mint. How can I do that? I read it somewhere said that I can share /boot and swap with multiple Distro, is it true? How can I make another /root directory for Ubuntu since I don't have any space left in my hard drive? Can I resize the /home partition without losing my data? How can I do that if it's possible? Now I've used 10-20% of my /home partition. I really hope somebody can help me with my question, if possible with a full tutorial starting from install with something else step until completion of the process. Thanks before :)

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  • Using NPM to share resources between UI projects [on hold]

    - by guy mograbi
    I am a UI team leader. My team has a lot of projects using different languages/technologies. In some parts we will rewrite (gradually - @Ampt this is for you) the application in order to enable new fresh technologies in and get old dinosaurs out. I am going to use Node Package Manager to set up an "all powerful" build/dependency manager. Can I use NPM to depend on a private github repository? Can I use NPM to depend on SVN? Will NPM play nice with quickbuild? Since each project might have a slightly different structure (think jetty/maven or play!framework) can I configure NPM to install some dependencies in different folders while still running it from the project's root? How can I, using NPM, get development resources out and build a packaged product? (like a war) Yes/No - is there a reason to use grunt? No discussion, just one liners.

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  • How is this "interface"-like structure/pattern called?

    - by Sebastian Negraszus
    Let's assume we have an XmlDoc class that contains basic functionality for dealing with an XML data structure and saving/loading data to/from a file. Now we have several subclasses, A, B and C. They all inherit from XmlDoc and add component-specific methods for setting and getting lots of data. They are like "interfaces" but also add an implementation for the signatures. Finally, we have an ABCDoc class that joins all the "interfaces" via virtual multiple inheritence and adds some ABCDoc-specific stuff, such as using XMLDoc-methods to set an appropriate doc type. We may also have an ADoc class for only saving A data. How is this pattern called? "Interface" is not really the right word since interfaces usually do not contain an implementation. Bonus points for C++ code conventions.

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  • Data structure supporting the following operations

    - by 500865
    I'm looking for a data structure for working with a set of data which is most efficient to do the following : Check whether an item has been categorized or not. (The categorized and uncategorized set are disjoint sets). Get the category of an item. Get all the items in a particular category. Get all the uncategorized items. Remove a particular item from the data set. I was thinking of having a Dictionary<String, Set<String>> to hold all the items in a given category, but that doesn't solve 2.

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  • Data structure for file search

    - by poly
    I've asked this question before and I got a few answers/idea, but I'm not sure how to implement them. I'm building a telecom messaging solution. Currently, I'm using a database to save my transaction/messages for the network stack I've built, and as you know it's slower than using a data structure (hash, linkedlist, etc...). My problem is that the data can be really huge, and it won't fit in the memory. I was thinking of saving the records in a file and the a key and line number in a hash, then if I want to access some record then I can get the line number from the hash, and get it from the file. I don't know how efficient is this; I think the database is doing a way better job than this on my behalf. Please share whatever you have in mind.

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  • Settlers-like terrain representation

    - by Olle
    Remember this beauty? I'm playing it now on my old Amiga 1200. My question is: How do you think they represented the terrain, data structure wise? Obviously it's some kind of points, with a height. Or hexagons. And how did they decide which dots were buildable? EDIT: I could rephrase the question to say "how do I achieve this kind of terrain", but I would still only be interested in how to do it on a machine with 1 MB of RAM and a 7 Mhz processor, because this is the machine i currently developing games for. If that seems like a vague or meaningless question to you, that's alright, but I'm still curious if someone has any knowledge about this.

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  • How to add active directory with sharepoint in the Virutal server ?

    - by pointlesspolitics
    I have a main server with windows server 2008 with active directory installed. Additionally, I have created the hyper-v virtual server with MOSS 2007 installed with dynamic ip address. I can access the sharepoint site as an intranet. How can I assign the access of all the active directory users and their profile to MOSS without adding them up manually ? If I am missing any information to provide please mention.

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  • What's the best simplest way to detect a file from a directory?

    - by Nano HE
    My code like this, I looked up the open command, but I am not sure it is the simplest way or not. if #Parser.exe exist in directory of Debug { move ("bin/Debug/Parser.exe","Parser.exe"); } elsif #Parser.exe exist in directory of Release { move ("bin/Release/Parser.exe","Parser.exe"); } else { die "Can't find the Parser.exe."; } Thank you.

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  • lighttpd header.html and directory listing together doesn't work.

    - by seridarus
    I've an HEADER.html page and a lots of directories in the same directory and want to show the header.html and dir-listing together at the site index like at this site : http://www.mirrorservice.org/sites/ftp.apache.org/ in my configuration : dir-listing.activate = "enable" dir-listing.show-header = "enable" it only shows header but not directory listing. Any suggestions?

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  • Compiling IcedTea: JDK home directory could not be found

    - by Eli
    Google Chrome keeps telling me that I need to update icedtea, I tried installing them from terminal, didn't work so I'm installing icedtea and icedtea-web from source, when I do ./configure it tells me that fastjar isn't installed so I installed it, then it tells me that gawk isn't installed and I installed it and now it says: checking for a JDK home directory... configure: error: "A JDK JDK home directory could not be found. I have openjdk7 installed, how to fix it?

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