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  • strange chi-square result using scikit_learn with feature matrix

    - by user963386
    I am using scikit learn to calculate the basic chi-square statistics(sklearn.feature_selection.chi2(X, y)): def chi_square(feat,target): """ """ from sklearn.feature_selection import chi2 ch,pval = chi2(feat,target) return ch,pval chisq,p = chi_square(feat_mat,target_sc) print(chisq) print("**********************") print(p) I have 1500 samples,45 features,4 classes. The input is a feature matrix with 1500x45 and a target array with 1500 components. The feature matrix is not sparse. When I run the program and I print the arrray "chisq" with 45 components, I can see that the component 13 has a negative value and p = 1. How is it possible? Or what does it mean or what is the big mistake that I am doing? I am attaching the printouts of chisq and p: [ 9.17099260e-01 3.77439701e+00 5.35004211e+01 2.17843312e+03 4.27047184e+04 2.23204883e+01 6.49985540e-01 2.02132664e-01 1.57324454e-03 2.16322638e-01 1.85592258e+00 5.70455805e+00 1.34911126e-02 -1.71834753e+01 1.05112366e+00 3.07383691e-01 5.55694752e-02 7.52801686e-01 9.74807972e-01 9.30619466e-02 4.52669897e-02 1.08348058e-01 9.88146259e-03 2.26292358e-01 5.08579194e-02 4.46232554e-02 1.22740419e-02 6.84545170e-02 6.71339545e-03 1.33252061e-02 1.69296016e-02 3.81318236e-02 4.74945604e-02 1.59313146e-01 9.73037448e-03 9.95771327e-03 6.93777954e-02 3.87738690e-02 1.53693158e-01 9.24603716e-04 1.22473138e-01 2.73347277e-01 1.69060817e-02 1.10868365e-02 8.62029628e+00] ********************** [ 8.21299526e-01 2.86878266e-01 1.43400668e-11 0.00000000e+00 0.00000000e+00 5.59436980e-05 8.84899894e-01 9.77244281e-01 9.99983411e-01 9.74912223e-01 6.02841813e-01 1.26903019e-01 9.99584918e-01 1.00000000e+00 7.88884155e-01 9.58633878e-01 9.96573548e-01 8.60719653e-01 8.07347364e-01 9.92656816e-01 9.97473024e-01 9.90817144e-01 9.99739526e-01 9.73237195e-01 9.96995722e-01 9.97526259e-01 9.99639669e-01 9.95333185e-01 9.99853998e-01 9.99592531e-01 9.99417113e-01 9.98042114e-01 9.97286030e-01 9.83873717e-01 9.99745466e-01 9.99736512e-01 9.95239765e-01 9.97992843e-01 9.84693908e-01 9.99992525e-01 9.89010468e-01 9.64960636e-01 9.99418323e-01 9.99690553e-01 3.47893682e-02]

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  • Automate paster create -t plone3_buildout

    - by roopesh
    I want to automate the process of plone3_buildout. Explanation: The default(the one I use) way of building a plone site is using paster, like so: paster create -t plone3_buildout This asks me a few questions and then create a default buildout for the site. What I want: I want to automate this process using buildout. My buildout will execute this paster command, feed in my preconfigured values to the paster. I haven't found a recipe which can do this. If someone has an idea of how to do this, please share the info. If there is a recipe which can feed values to interactive commands(with known output, like with plone3_buildout command), that would be useful too.

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  • how to format date when i load data from google-app-engine..

    - by zjm1126
    i use remote_api to load data from google-app-engine. appcfg.py download_data --config_file=helloworld/GreetingLoad.py --filename=a.csv --kind=Greeting helloworld the setting is: class AlbumExporter(bulkloader.Exporter): def __init__(self): bulkloader.Exporter.__init__(self, 'Greeting', [('author', str, None), ('content', str, None), ('date', str, None), ]) exporters = [AlbumExporter] and i download a.csv is : the date is not readable , and the date in appspot.com admin is : so how to get the full date ?? thanks i change this : class AlbumExporter(bulkloader.Exporter): def __init__(self): bulkloader.Exporter.__init__(self, 'Greeting', [('author', str, None), ('content', str, None), ('date', lambda x: datetime.datetime.strptime(x, '%m/%d/%Y').date(), None), ]) exporters = [AlbumExporter] but the error is :

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  • Installing virtualenvwrapper

    - by pocoa
    I've installed virtualenv and virtualenvwrapper on Windows using easy_install. But mkvirtualenv is missing. I tried to search on my machine but I couldn't find it. I don't know how to solve it. Do you have any idea?

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  • Django: Admin with multiple sites & languages

    - by lazerscience
    Hi everybody! I'm supposed to build some Django apps, that allow you to administer multiple sites through one backend. The contrib.sites framework is quite perfect for my purposes. I can run multiple instances of manage.py with different settings for each site; but how should django's admin deal with different settings for different sites, eg. if they have different sets of languages, a different (default) language? So there are some problem s to face if you have to work on objects coming from different sites in one admin... I think settings.ADMIN_FOR is supposed to be quite helpful for cases like this, but theres hardly any documentation about it and I think it's not really used in the actual Django version (?). So any ideas/solutions are welcome and much appreciated! Thanks a lot...

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  • Can DBRefs contain additional fields?

    - by Soviut
    I've encountered several situations when using MongoDB that require the use of DBRefs. However, I'd also like to cache some fields from the referenced document in the DBRef itself. {$ref:'user', $id:'10285102912A', username:'Soviut'} For example, I may want to have the username available even though the user document is referenced. This would provide me all the benefits of a single document approach; Faster querying and eliminating the need to do manual dereferencing in my code. While at the same time allowing me to use references where they make sense. The idea being that when the referenced document is updated (a user changes their name, for example) my business layer can automatically update all the documents that reference it. Ultimately, I'm wondering if it's considered good form to store additional fields on my DBRefs? Will it break anything? Will I lose my data each time a reference is rewritten? Will drivers like pymongo support it?

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  • gae error : Error: Server Error, how to debut it .

    - by zjm1126
    when i upload my project to google-app-engine , it show this : Error: Server Error The server encountered an error and could not complete your request. If the problem persists, please report your problem and mention this error message and the query that caused it. why ? how can i debug this error ? thanks

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  • PIL saves image colour wrong

    - by Tom Viner
    I have an image. I want to resize it using PIL, but it come out like this. Even without a resize it still messes up the colour. Minimal code: from PIL import Image import os import urllib import webbrowser orig_url = 'http://mercedesclub.org.uk/images/stackoverflow-question/least-popular-colours-_-500-x-500.jpg' temp_fn, _ = urllib.urlretrieve(orig_url) im = Image.open(temp_fn) fn = os.tempnam() + '.jpg' im.save(fn) webbrowser.open(fn) I've tried Image.open(temp_fn).convert(format) with 'RGB', 'CMYK' and 'L' as formats, but still get weirdly coloured or grey results. When I load the image from my hard drive and I can see: >>>im.info {'adobe': 100, 'progression': 1, 'exif': 'Exif\x00\x00MM\x00*...\x7f\xff\xd9', 'adobe_transform': 100} >>>im.format 'JPEG' >>>im.mode 'CMYK' >>> im._getexif() {40961: 65535, 40962: 500, 40963: 500, 296: 2, 34665: 164, 274: 1, 305: 'Adobe Photoshop CS Macintosh', 306: '2010:02:26 12:46:54', 282: (300, 1), 283: (300, 1)} Thanks and let me know if you need any more data.

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  • Where is the PyGTK event stack?

    - by mkotechno
    You can know if the event stack is empty calling the gtk.events_pending() method, but I want to manipulate the pending events and filter it before the next gtk loop cycle, this data must be stored somewhere as an attribute or something, but where? Thanks.

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  • Regex for Matching First Alphanumeric Character skipping (The |An? )

    - by TheLizardKing
    I have a list of artists, albums and tracks that I want to sort using the first letter of their respective name. The issue arrives when I want to ignore "The ", "A ", "An " and other various non-alphanumeric characters (Talking to you "Weird Al" Yankovic and [dialog]). Django has a nice start '^(An?|The) +' but I want to ignore those and a few others of my choice. I am doing this in Django, using a MySQL db with utf8_bin collation.

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  • Multi-part template issue with Jinja2

    - by Alan Harris-Reid
    Hi, When creating templates I typically have 3 separate parts (header, body, footer) which I combine to pass a singe string to the web-server (CherryPy in this case). My first approach is as follows... from jinja2 import Environment, FileSystemLoader env = Environment(loader=FileSystemLoader('')) tmpl = env.get_template('Body.html') page_body = tmpl.render() tmpl = env.get_template('Header.html') page_header = tmpl.render() tmpl = env.get_template('Footer.html') page_footer = tmpl.render() page_code = page_header + page_body + page_footer but this contains repetitious code, so my next approach is... def render_template(html_file): from jinja2 import Environment, FileSystemLoader env = Environment(loader=FileSystemLoader('')) tmpl = env.get_template(html_file) return tmpl.render() page_header = render_template('Header.html') page_body = render_template('Body.html') page_footer = render_template('Footer.html) However, this means that each part is created in its own environment - can that be a problem? Are there any other downsides to this approach? I have chosen the 3-part approach over the child-template approach because I think it may be more flexible (and easier to follow), but I might be wrong. Anyone like to convince me that using header, body and footer blocks might be better? Any advice would be appreciated. Alan

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  • How to do call function after client finishes download from tornado web server?

    - by Shabbyrobe
    I would like to be able to run some cleanup functions if and only if the client successfully completes the download of a file I'm serving using Tornado. I installed the firefox throttle tool and had it slow the connection down to dialup speed and installed this handler to generate a bunch of rubbish random text: class CrapHandler(BaseHandler): def get(self, token): crap = ''.join(random.choice(string.ascii_uppercase + string.digits) for x in range(100000)) self.write(crap) print "done" I get the following output from tornado immediately after making the request: done I 100524 19:45:45 web:772] 200 GET /123 (192.168.45.108) 195.10ms The client then plods along downloading for about 20 seconds. I expected that it would print "done" after the client was done. Also, if I do the following I get pretty much the same result: class CrapHandler(BaseHandler): @tornado.web.asynchronous def get(self, token): crap = ''.join(random.choice(string.ascii_uppercase + string.digits) for x in range(100000)) self.write(crap) self.finish() print "done" Am I missing something fundamental here? Can tornado even support what I'm trying to do? If not, is there an alternative that does?

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  • Extending rst container to output extra div attributes

    - by Manwe
    I'm starting to use pelican with reStructuredText rst page format. I have custom javascript (jQuery) things that I'd like to control with div attributes like data-default-tpl="basename" with nested content. What to extend and what. I've looked at Directives and nodes, but I just can't wrap my head around how to do it. .. rstdiv:: class1 class2 :name: namessid :extra: thisIsMyextra .. rstdiv:: nested class3 :name: nestedid :extra: data-default-tpl="basename" some text .. container:: This is normal rst container :name: contid text From rst to html with pelican. <div id="nameisid" class="class1 class2" thisIsMyextra> <div id="nestedid" class="nested class3" data-default-tpl="basename"> some text </div> </div> <div id="contid" class="container This is normal rst container"> text </div>

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  • Geocoding non-addresses: Geopy

    - by Phil Donovan
    Using geopy to geocode alcohol outlets in NZ. The problem I have is that some places do not have street addresses but are places in Google Maps. For example, plugging: Furneaux Lodge, Endeavour Inlet, Queen Charlotte Sound, Marlborough 7250 into Google Maps via the browser GUI gives me However, using that in Geopy I get a GQueryError saying this geographic location does not exist. Here is the code for geocoding: def GeoCode(address): g=geocoders.Google(domain="maps.google.co.nz") geoloc = g.geocode(address, exactly_one=False) place, (lat, lng) = geoloc[0] GeoOut = [] GeoOut.extend([place, lat, lng]) return GeoOut GeoCode("Furneaux Lodge, Endeavour Inlet, Queen Charlotte Sound, Marlboroguh 7250") Meanwhile, I notice that "Eiffel Tower" works fine. Is there away to solve this and can someone explain the difference between The Eiffel Tower and Furneaux Lodge within Google 'locations'?

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  • Is there a better way of making numpy.argmin() ignore NaN values

    - by Dragan Chupacabrovic
    Hello Everybody, I want to get the index of the min value of a numpy array that contains NaNs and I want them ignored >>> a = array([ nan, 2.5, 3., nan, 4., 5.]) >>> a array([ NaN, 2.5, 3. , NaN, 4. , 5. ]) if I run argmin, it returns the index of the first NaN >>> a.argmin() 0 I substitute NaNs with Infs and then run argmin >>> a[isnan(a)] = Inf >>> a array([ Inf, 2.5, 3. , Inf, 4. , 5. ]) >>> a.argmin() 1 My dilemma is the following: I'd rather not change NaNs to Infs and then back after I'm done with argmin (since NaNs have a meaning later on in the code). Is there a better way to do this? There is also a question of what should the result be if all of the original values of a are NaN? In my implementation the answer is 0

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  • Enable PyGTK Eventbox motion-notify-event while is a Layout child

    - by mkotechno
    I noticed when a Eventbox is added into a Layout some events are missed, this does not happend for example adding it to a Fixed (very similar widget), I tried to restore the event mask in this way with no sucess: import pygtk import gtk def foo(widget, event): print event pygtk.require('2.0') window = gtk.Window(gtk.WINDOW_TOPLEVEL) window.connect('destroy', lambda x: gtk.main_quit()) eventbox = gtk.EventBox() eventbox.connect('button-press-event', foo) # works eventbox.connect('motion-notify-event', foo) # fail eventbox.set_events( gtk.gdk.BUTTON_MOTION_MASK| # restoring missed masks gtk.gdk.BUTTON1_MOTION_MASK| gtk.gdk.BUTTON2_MOTION_MASK| gtk.gdk.BUTTON3_MOTION_MASK) layout = gtk.Layout() image = gtk.image_new_from_file('/home/me/picture.jpg') layout.add(image) eventbox.add(layout) window.add(eventbox) window.show_all() gtk.main() How should I restore the missed event/mask?

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  • Dynamic Spacer in ReportLab

    - by ptikobj
    I'm automatically generating a PDF-file with Platypus that has dynamic content. This means that it might happen that the length of the text content (which is directly at the bottom of the pdf-file) may vary. However, it might happen that a page break is done in cases where the content is too long. This is because i use a "static" spacer: s = Spacer(width=0, height=23.5*cm) as i always want to have only one page, I somehow need to dynamically set the height of the Spacer, so that it takes the "rest" of the space that is on the page as its height. Now, how do i get the "rest" of height that is left on my page?

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