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  • WCF/MSMQ Transport Security with Certificates

    - by user104295
    Hi there, my goal is to secure the communication between MSMQ Queue Managers – I don’t want unknown clients sending messages to my MSMQ server. I have spent many hours now trying to get Transport security working for the net.msmq binding in WCF, where MSMQ is in Workgroup mode and the client and server do not have Active Directory… so I’m using certificates. I have created a new X.509 certificate, called Kristan and put it into the “Trusted people” store on the server and into the My store of Current User of the client. The error I’m getting is: An error occurred while sending to the queue: Unrecognized error -1072824272 (0xc00e0030).Ensure that MSMQ is installed and running. If you are sending to a local queue, ensure the queue exists with the required access mode and authorization. Using smartsniff, I see that there’s no attempted connection with the remote MSMQ, however, it’s an error probably coming from the local queue manager. The stack trace is: at System.ServiceModel.Channels.MsmqOutputChannel.OnSend(Message message, TimeSpan timeout) at System.ServiceModel.Channels.OutputChannel.Send(Message message, TimeSpan timeout) at System.ServiceModel.Dispatcher.OutputChannelBinder.Send(Message message, TimeSpan timeout) at System.ServiceModel.Channels.ServiceChannel.Call(String action, Boolean oneway, ProxyOperationRuntime operation, Object[] ins, Object[] outs, TimeSpan timeout) at System.ServiceModel.Channels.ServiceChannelProxy.InvokeService(IMethodCallMessage methodCall, ProxyOperationRuntime operation) at System.ServiceModel.Channels.ServiceChannelProxy.Invoke(IMessage message) The code:- EndpointAddress endpointAddress = new EndpointAddress(new Uri(endPointAddress)); NetMsmqBinding clientBinding = new NetMsmqBinding(); clientBinding.Security.Mode = NetMsmqSecurityMode.Transport; clientBinding.Security.Transport.MsmqAuthenticationMode = MsmqAuthenticationMode.Certificate; clientBinding.Security.Transport.MsmqProtectionLevel = System.Net.Security.ProtectionLevel.Sign; clientBinding.ExactlyOnce = false; clientBinding.UseActiveDirectory = false; // start new var channelFactory = new ChannelFactory<IAsyncImportApi>(clientBinding, endpointAddress); channelFactory.Credentials.ClientCertificate.SetCertificate("CN=Kristan", StoreLocation.CurrentUser, StoreName.My); The queue is flagged as ‘Authenticated’ on the server. I have checked the effect of this and if I turn off all security in the client send, then I get ‘Signature is invalid’ – which is understandable and shows that it’s definitely looking for a sig. Are there are special ports that I need to check are open for cert-based msmq auth? thanks Kris

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  • How can I run BitchX when I don't have ssh or shell access?

    - by Christopher
    I just installed an IRC bot, B****X (Don't ask, I don't know - the real name is not censored). I did all of the configuration and chmod'ed the pl files to 755, but running it won't work. My host does not allow SSH/Shell (which is how the documentation says to runs he script), but just going to the URL usually works because of this. However, I get a 500 (Internal Server Error) error. I have logged errors: Possible unintended interpolation of @moz in string at ./bitch.conf line 78 (#1) (W ambiguous) You said something like `@foo' in a double-quoted string but there was no array @foo in scope at the time. If you wanted a literal @foo, then write it as \@foo; otherwise find out what happened to the array you apparently lost track of. [Fri Mar 19 16:31:43 2010] bitch.pl: Possible unintended interpolation of @moz in string at ./bitch.conf line 78. Uncaught exception from user code: [Fri Mar 19 16:31:46 2010] bitch.pl: [[31mFAILED[0m] (connect error: Connection refused) at /usr/local/lib/perl5/5.8.8/CGI/Carp.pm line 354 CGI::Carp::realdie('[Fri Mar 19 16:31:46 2010] bitch.pl: [\x{1b}[31mFAILED\x{1b}[0m] (conne...') called at /usr/local/lib/perl5/5.8.8/CGI/Carp.pm line 446 CGI::Carp::die('[\x{1b}[31mFAILED\x{1b}[0m] (connect error: Connection refused)\x{a}') called at bitch.pl line 555 Thanks in advance

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  • jboss 5.0 data source configuration in ear file. How can I run oracle 10g and 11g on the same serve

    - by Joe
    Currently my setup is: in my ear META-INF/jboss-app.xml <jboss-app> <service>datasource-ds.xml</service> </module> and datasource-ds.xml <datasources> <local-tx-datasource> <jndi-name>jdbc/mydeployment</jndi-name> <connection-url>jdbc:oracle:thin:@eir:myport:mydbname</connection-url> <driver-class>oracle.jdbc.driver.OracleDriver</driver-class> <user-name>myuser</user-name> <password>mypassword</password> <exception-sorter-class-name>org.jboss.resource.adapter.jdbc.vendor.OracleExceptionSorter</exception-sorter-class-name> <metadata> <type-mapping>Oracle9i</type-mapping> </metadata> </local-tx-datasource> </datasources> and it works when ojdbc5.jar is in my servername/lib How can I config my oracle driver information in my .ear file so that I can have two different ear deployments, one using oracle 10g and one using oracle 11g?

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  • ExtJS: dynamically ajust layout after adding/removing some form fields

    - by Sergei Stolyarov
    I have form layout with some TextField elements and one HtmlEditor element. Some TextField elements are "hideable", i.e. could be hid or showed. After hiding/showing elements HtmlEditor instance break layout — there appear empty space or element doesn't end at the window border. Is it possible to tell to HtmlEditor instance use all remaining available space? Even in case when some elements are hidden/showed. I've tried to use anchor property, but it works well until some element removed from the layout. Updated Here is a sample code: var htmlEditor = new Ext.form.HtmlEditor({ anchor: '100% -54', hideLabel: true }); var fp = new Ext.form.FormPanel({ items: [{xtype: 'textfield', fieldLabel: 'zzz', mode: 'local'}, {xtype: 'textfield', fieldLabel: 'nnn', id: 'id-one', mode: 'local'}, htmlEditor] }); var w = new Ext.Window({layout: 'fit', height: 400, width: 600, tbar: [{text: 'click', handler: function() { // hide element Ext.getCmp('id-one').getEl().up('.x-form-item').setDisplayed(false); w.doLayout(); } }], items: fp }); w.show(); Execute, click toolbar button "click", one field should disappear, then look at empty space below htmleditor.

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  • building median for each string in IList<IDictionary<string, double>>

    - by Oliver
    Actually i have a little brain bender and and just can't find the right direction to get it to work: Given is an IList<IDictionary<string, double>> and it is filled as followed: Name|Value ----+----- "x" | 3.8 "y" | 4.2 "z" | 1.5 ----+----- "x" | 7.2 "y" | 2.9 "z" | 1.3 ----+----- ... | ... To fill this up with some random data i used the following methods: var list = CreateRandomPoints(new string[] { "x", "y", "z" }, 20); This will work as followed: private IList<IDictionary<string, double>> CreateRandomPoints(string[] variableNames, int count) { var list = new List<IDictionary<string, double>>(count); list.AddRange(CreateRandomPoints(variableNames).Take(count)); return list; } private IEnumerable<IDictionary<string, double>> CreateRandomPoints(string[] variableNames) { while (true) yield return CreateRandomLine(variableNames); } private IDictionary<string, double> CreateRandomLine(string[] variableNames) { var dict = new Dictionary<string, double>(variableNames.Length); foreach (var variable in variableNames) { dict.Add(variable, _Rand.NextDouble() * 10); } return dict; } Also i can say that it is already ensured that every Dictionary within the list contains the same keys (but from list to list the names and count of the keys can change). So that's what i got. Now to the things i need: I'd like to get the median (or any other math aggregate operation) of each Key within all the dictionaries, so that my function to call would look something like: IDictionary<string, double> GetMedianOfRows(this IList<IDictionary<string, double>> list) The best would be to give some kind of aggregate operation as a parameter to the function to make it more generic (don't know if the func has the correct parameters, but should imagine what i'd like to do): private IDictionary<string, double> Aggregate(this IList<IDictionary<string, double>> list, Func<IEnumerable<double>, double> aggregator) Also my actual biggest problem is to do the job with a single iteration over the list, cause if within the list are 20 variables with 1000 values i don't like to iterate 20 times over the list. Instead i would go one time over the list and compute all twenty variables at once (The biggest advantage of doing it that way would be to use this also as IEnumerable<T> on any part of the list in a later step). So here is the code i already got: public static IDictionary<string, double> GetMedianOfRows(this IList<IDictionary<string, double>> list) { //Check of parameters is left out! //Get first item for initialization of result dictionary var firstItem = list[0]; //Create result dictionary and fill in variable names var dict = new Dictionary<string, double>(firstItem.Count); //Iterate over the whole list foreach (IDictionary<string, double> row in list) { //Iterate over each key/value pair within the list foreach (var kvp in row) { //How to determine median of all values? } } return dict; } Just to be sure here is a little explanation about the Median.

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  • Guidelines for using Merge task in SSIS

    - by thursdaysgeek
    I have a table with three fields, one an identity field, and I need to add some new records from a source that has the other two fields. I'm using SSIS, and I think I should use the merge tool, because one of the sources is not in the local database. But, I'm confused by the merge tool and the proper process. I have my one source (an Oracle table), and I get two fields, well_id and well_name, with a sort after, sorting by well_id. I have the destination table (sql server), and I'm also using that as a source. It has three fields: well_key (identity field), well_id, and well_name, and I then have a sort task, sorting on well_id. Both of those are input to my merge task. I was going to output to a temporary table, and then somehow get the new records back into the sql server table. Oracle Well SQL Well | | V V Sort Source Sort Well | | -------> Merge* <----------- | V Temp well table I suspect this isn't the best way to use this tool, however. What are the proper steps for a merge like this? One of my reasons for questioning this method is that my merge has an error, telling me that the "Merge Input 2" must be sorted, but its source is a sort task, so it IS sorted. Example data SQL Well (before merge) well_key well_id well_name 1 123 well k 2 292 well c 3 344 well t 5 439 well d Oracle Well well_id well_name 123 well k 292 well c 311 well y 344 well t 439 well d 532 well j SQL Well (after merge) well_key well_id well_name 1 123 well k 2 292 well c 3 344 well t 5 439 well d 6 311 well y 7 532 well j Would it be better to load my Oracle Well to a temporary local file, and then just use a sql insert statment on it?

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  • PHP Configuration file won’t load IIS7 x64

    - by Martin Murphy
    using Fast CGI I can't get it to read the php.ini file. See my phpinfo below. System Windows NT WIN-PAFTBLXQWYW 6.0 build 6001 Build Date Mar 5 2009 19:43:24 Configure Command cscript /nologo configure.js "--enable-snapshot-build" "--enable-debug-pack" "--with-snapshot-template=d:\php-sdk\snap_5_2\vc6\x86\template" "--with-php-build=d:\php-sdk\snap_5_2\vc6\x86\php_build" "--disable-zts" "--disable-isapi" "--disable-nsapi" "--with-pdo-oci=D:\php-sdk\oracle\instantclient10\sdk,shared" "--with-oci8=D:\php-sdk\oracle\instantclient10\sdk,shared" "--enable-htscanner=shared" Server API CGI/FastCGI Virtual Directory Support disabled Configuration File (php.ini) Path C:\Windows Loaded Configuration File (none) Scan this dir for additional .ini files (none) My php.ini file is residing in both my c:\php and my c:\windows I've made sure it has read permissions in both places from network service. I've added various registry settings, Environment Variables and followed multiple tutorials found on the web and no dice as of yet. Rebooted after each. My original install was using MS "Web Platform Installer" however I have since rebooted. Any ideas on where to go from here would be most welcome.

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  • libdb4.6-dev vs libdb4.7-dev

    - by routinet
    I want to install PHP 5.3 on Ubuntu Intrepid. To install apxs, I need to install libaprutil1-dev, which depends on libdb4.6-dev. When I look at installing that, apt-get wants to remove the currently installed libdb-dev and libdb4.7-dev. Any advice on how to proceed? [root@server:/usr/local] #> apt-get -s install libaprutil1-dev Reading package lists... Done Building dependency tree Reading state information... Done Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. Since you only requested a single operation it is extremely likely that the package is simply not installable and a bug report against that package should be filed. The following information may help to resolve the situation: The following packages have unmet dependencies: libaprutil1-dev: Depends: libdb4.6-dev but it is not going to be installed E: Broken packages [root@server:/usr/local] #> apt-get -s install libdb4.6-dev Reading package lists... Done Building dependency tree Reading state information... Done The following packages were automatically installed and are no longer required: debhelper libltdl7-dev po-debconf intltool-debian libtool courier-ssl gettext libgdbm-dev libzip1 html2text autotools-dev libmail-sendmail-perl Use 'apt-get autoremove' to remove them. Suggested packages: db4.6-doc The following packages will be REMOVED: libdb-dev libdb4.7-dev The following NEW packages will be installed: libdb4.6-dev 0 upgraded, 1 newly installed, 2 to remove and 54 not upgraded. Remv libdb-dev [4.7.25.2ubuntu1] Remv libdb4.7-dev [4.7.25-3] Inst libdb4.6-dev (4.6.21-10 Ubuntu:8.10/intrepid) Conf libdb4.6-dev (4.6.21-10 Ubuntu:8.10/intrepid)

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  • How to override ATTR_DEFAULT_IDENTIFIER_OPTIONS in Models in Doctrine?

    - by user309083
    Here someone explained that setting a 'primary' attribute for any row in your Model will override Doctrine_Manager's ATTR_DEFAULT_IDENTIFIER_OPTIONS attribute: http://stackoverflow.com/questions/2040675/how-do-you-override-a-constant-in-doctrines-models This works, however if you have a many to many relation whereby the intermediate table is created, even if you have set both columns in the intermediate to primary an error still results when Doctrine tries to place an index on the nonexistant 'id' column upon table creation. Here's my code: //Bootstrap // set the default primary key to be named 'id', integer, 4 bytes Doctrine_Manager::getInstance()->setAttribute( Doctrine_Core::ATTR_DEFAULT_IDENTIFIER_OPTIONS, array('name' => 'id', 'type' => 'integer', 'length' => 4)); //User Model class User extends Doctrine_Record { public function setTableDefinition() { $this->setTableName('users'); } public function setUp() { $this->hasMany('Role as roles', array( 'local' => 'id', 'foreign' => 'user_id', 'refClass' => 'UserRole', 'onDelete' => 'CASCADE' )); } } //Role Model class Role extends Doctrine_Record { public function setTableDefinition() { $this->setTableName('roles'); } public function setUp() { $this->hasMany('User as users', array( 'local' => 'id', 'foreign' => 'role_id', 'refClass' => 'UserRole' )); } } //UserRole Model class UserRole extends Doctrine_Record { public function setTableDefinition() { $this->setTableName('roles_users'); $this->hasColumn('user_id', 'integer', 4, array('primary'=>true)); $this->hasColumn('role_id', 'integer', 4, array('primary'=>true)); } } Resulting error: SQLSTATE[42000]: Syntax error or access violation: 1072 Key column 'id' doesn't exist in table. Failing Query: "CREATE TABLE roles_users (user_id INT UNSIGNED NOT NULL, role_id INT UNSIGNED NOT NULL, INDEX id_idx (id), PRIMARY KEY(user_id, role_id)) ENGINE = INNODB". Failing Query: CREATE TABLE roles_users (user_id INT UNSIGNED NOT NULL, role_id INT UNSIGNED NOT NULL, INDEX id_idx (id), PRIMARY KEY(user_id, role_id)) ENGINE = INNODB I'm creating my tables using Doctrine::createTablesFromModels();

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  • MySQL is hogging my server resources

    - by Reacen
    Does anyone have any idea of what can cause this weird behaviour and how I go about fixing it? This is all coming from MySQL only (both RAM and CPU usage), for about 10 minutes after I reboot my Java game server (that has a pool of 256 connections). There are not that many queries and I think it may be more of a MySQL misconfiguration problem. My server: 3.20 GHz * 6 core / 24 GB RAM / 64 bit Windows Server 2003. My game server: Java server, with 256 MySQL connections pool (MyISAM engine), about 500,000 accounts, and 9 million rows of game items in database and about 3,000 players are connected. After about 15 minutes of the game server reboot, the server resumes its stability and CPU usage drop down to 1% ~ 5% and memory to 6 GB. Here is a copy of my MySQL configuration. Also, any advice about my MySQL configuration will be appreciated. I really set it up almost at random. # Example MySQL config file for very large systems. # # This is for a large system with memory of 1G-2G where the system runs mainly # MySQL. # # You can copy this file to # /etc/my.cnf to set global options, # mysql-data-dir/my.cnf to set server-specific options (in this # installation this directory is C:\mysql\data) or # ~/.my.cnf to set user-specific options. # # In this file, you can use all long options that a program supports. # If you want to know which options a program supports, run the program # with the "--help" option. # The following options will be passed to all MySQL clients [client] #password = your_password port = 3306 socket = /tmp/mysql.sock # Here follows entries for some specific programs # The MySQL server [mysqld] #log=c:\mysql.log port = 3306 socket = /tmp/mysql.sock skip-locking key_buffer_size = 2572M max_allowed_packet = 64M table_open_cache = 512 sort_buffer_size = 128M read_buffer_size = 128M read_rnd_buffer_size = 128M myisam_sort_buffer_size = 500M thread_cache_size = 32 query_cache_size = 1948M # Try number of CPU's*2 for thread_concurrency thread_concurrency = 12 max_connections = 5000 # Don't listen on a TCP/IP port at all. This can be a security enhancement, # if all processes that need to connect to mysqld run on the same host. # All interaction with mysqld must be made via Unix sockets or named pipes. # Note that using this option without enabling named pipes on Windows # (via the "enable-named-pipe" option) will render mysqld useless! # #skip-networking # Replication Master Server (default) # binary logging is required for replication log-bin=mysql-bin # required unique id between 1 and 2^32 - 1 # defaults to 1 if master-host is not set # but will not function as a master if omitted server-id = 1 # Replication Slave (comment out master section to use this) # # To configure this host as a replication slave, you can choose between # two methods : # # 1) Use the CHANGE MASTER TO command (fully described in our manual) - # the syntax is: # # CHANGE MASTER TO MASTER_HOST=<host>, MASTER_PORT=<port>, # MASTER_USER=<user>, MASTER_PASSWORD=<password> ; # # where you replace <host>, <user>, <password> by quoted strings and # <port> by the master's port number (3306 by default). # # Example: # # CHANGE MASTER TO MASTER_HOST='125.564.12.1', MASTER_PORT=3306, # MASTER_USER='joe', MASTER_PASSWORD='secret'; # # OR # # 2) Set the variables below. However, in case you choose this method, then # start replication for the first time (even unsuccessfully, for example # if you mistyped the password in master-password and the slave fails to # connect), the slave will create a master.info file, and any later # change in this file to the variables' values below will be ignored and # overridden by the content of the master.info file, unless you shutdown # the slave server, delete master.info and restart the slaver server. # For that reason, you may want to leave the lines below untouched # (commented) and instead use CHANGE MASTER TO (see above) # # required unique id between 2 and 2^32 - 1 # (and different from the master) # defaults to 2 if master-host is set # but will not function as a slave if omitted #server-id = 2 # # The replication master for this slave - required #master-host = <hostname> # # The username the slave will use for authentication when connecting # to the master - required #master-user = <username> # # The password the slave will authenticate with when connecting to # the master - required #master-password = <password> # # The port the master is listening on. # optional - defaults to 3306 #master-port = <port> # # binary logging - not required for slaves, but recommended #log-bin=mysql-bin # # binary logging format - mixed recommended #binlog_format=mixed # Point the following paths to different dedicated disks #tmpdir = /tmp/ #log-update = /path-to-dedicated-directory/hostname # Uncomment the following if you are using InnoDB tables #innodb_data_home_dir = C:\mysql\data/ #innodb_data_file_path = ibdata1:2000M;ibdata2:10M:autoextend #innodb_log_group_home_dir = C:\mysql\data/ # You can set .._buffer_pool_size up to 50 - 80 % # of RAM but beware of setting memory usage too high #innodb_buffer_pool_size = 384M #innodb_additional_mem_pool_size = 20M # Set .._log_file_size to 25 % of buffer pool size #innodb_log_file_size = 100M #innodb_log_buffer_size = 8M #innodb_flush_log_at_trx_commit = 1 #innodb_lock_wait_timeout = 50 [mysqldump] quick max_allowed_packet = 64M [mysql] no-auto-rehash # Remove the next comment character if you are not familiar with SQL #safe-updates [myisamchk] key_buffer_size = 256M sort_buffer_size = 256M read_buffer = 8M write_buffer = 8M [mysqlhotcopy] interactive-timeout

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  • Imagemagick PDF to JPG conversion failing

    - by sbressler
    I'm trying to convert the first page of a PDF to a JPG. I'm pretty sure I got this to work with certain PDFs, but is it really possible that certain PDFs are made incorrectly and cannot be converted? I tried running this first: $ convert 10-03-26.pdf[1] test.jpg And I got the follow: Error: /syntaxerror in readxref Operand stack: Execution stack: %interp_exit .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 1 3 %oparray_pop 1 3 %oparray_pop --nostringval-- --nostringval-- --nostringval-- --nostringval-- --nostringval-- --nostringval-- Dictionary stack: --dict:1062/1417(ro)(G)-- --dict:0/20(G)-- --dict:73/200(L)-- --dict:73/200(L)-- --dict:97/127(ro)(G)-- --dict:229/230(ro)(G)-- --dict:14/15(L)-- Current allocation mode is local ESP Ghostscript 7.07.1: Unrecoverable error, exit code 1 convert: Postscript delegate failed `10-03-26.pdf'. Running this instead: $ convert -verbose -colorspace rgb '10-03-26.pdf[1]' test.jpg I get the following: Error: /syntaxerror in readxref Operand stack: Execution stack: %interp_exit .runexec2 --nostringval-- --nostringval-- --nostringval-- 2 %stopped_push --nostringval-- --nostringval-- --nostringval-- false 1 %stopped_push 1 3 %oparray_pop 1 3 %oparray_pop --nostringval-- --nostringval-- --nostringval-- --nostringval-- --nostringval-- --nostringval-- Dictionary stack: --dict:1062/1417(ro)(G)-- --dict:0/20(G)-- --dict:73/200(L)-- --dict:73/200(L)-- --dict:97/127(ro)(G)-- --dict:229/230(ro)(G)-- --dict:14/15(L)-- Current allocation mode is local ESP Ghostscript 7.07.1: Unrecoverable error, exit code 1 "gs" -q -dBATCH -dSAFER -dMaxBitmap=500000000 -dNOPAUSE -dAlignToPixels=0 "-sDEVICE=pnmraw" -dTextAlphaBits=4 -dGraphicsAlphaBits=4 "-g792x1611" "-r72x72" -dFirstPage=2 -dLastPage=2 "-sOutputFile=/tmp/magick-XXU3T44P" "-f/tmp/magick-XXoMKL8Z" "-f/tmp/magic2eec1F"Start of Image Define Huffman Table 0x00 0 1 5 1 1 1 1 1 1 0 0 0 0 0 0 0 Define Huffman Table 0x01 0 3 1 1 1 1 1 1 1 1 1 0 0 0 0 0 Define Huffman Table 0x10 0 2 1 3 3 2 4 3 5 5 4 4 0 0 1 125 Define Huffman Table 0x11 0 2 1 2 4 4 3 4 7 5 4 4 0 1 2 119 End Of Image convert: Postscript delegate failed `10-03-26.pdf'. Why would the conversion fail? Thanks!

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  • Maven 2 checkstyle plugin version 2.5 - Problem with configLocation

    - by Nils Schmidt
    Hi there, I am using checkstyle plugin in maven 2. I now want to switch my config file, from the default one to a) an online file, or b) a local file. I tried the following two things, which both didnt work. Any suggestions? A) Local file, which is directly in my project folder next to the pom.xml <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-checkstyle-plugin</artifactId> <configuration> <configLocation>checkstyle.xml</configLocation> </configuration> </plugin> B) Remote file, that is stored on a server <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-checkstyle-plugin</artifactId> <configuration> <configLocation>http://stud.hs-heilbronn.de/~nischmid/development/checkstyle-config.xml</configLocation> </configuration> </plugin> Both cases result in an error like this: [INFO] An error has occurred in Checkstyle report generation. Embedded error: Failed during checkstyle execution Could not find resource 'file:checkstyle.xml'. Any help would be appreciated!

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  • BASH statements execute alone but return "no such file" in for loop.

    - by reve_etrange
    Another one I can't find an answer for, and it feels like I've gone mad. I have a BASH script using a for loop to run a complex command (many protein sequence alignments) on a lot of files (~5000). The loop produces statements that will execute when given alone (i.e. copy-pasted from the error message to the command prompt), but which return "no such file or directory" inside the loop. Script below; there are actually several more arguments but this includes some representative ones and the file arguments. #!/bin/bash # Pass directory with targets as FASTA sequences as argument. # Arguments to psiblast # Common db=local/db/nr/nr outfile="/mnt/scratch/psi-blast" e=0.001 threads=8 itnum=5 pssm="/mnt/scratch/psi-blast/pssm." pssm_txt="/mnt/scratch/psi-blast/pssm." pseudo=0 pwa_inclusion=0.002 for i in ${1}/* do filename=$(basename $i) "local/ncbi-blast-2.2.23+/bin/psiblast\ -query ${i}\ -db $db\ -out ${outfile}/${filename}.out\ -evalue $e\ -num_threads $threads\ -num_iterations $itnum\ -out_pssm ${pssm}$filename\ -out_ascii_pssm ${pssm_txt}${filename}.txt\ -pseudocount $pseudo\ -inclusion_ethresh $pwa_inclusion" done Running this scripts gives "<scriptname> line <last line before 'done'>: <attempted command> : No such file or directory. If I then paste the attempted command onto the prompt it will run. Each of these commands takes a couple of minutes to run.

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  • sphinx xmlpipe2 cassandra and ruby 1.9

    - by user369083
    Hi, I start to using cassandra and I want to index my db with sphinx. I wrote ruby script which is used as xmlpipe, and I configure sphinx to use it. source xmlsrc { type = xmlpipe2 xmlpipe_command = /usr/local/bin/ruby /home/httpd/html/app/script/sphinxpipe.rb } When I run script from console output looks fine, but when I run indexer sphinx return error $ indexer test_index Sphinx 0.9.9-release (r2117) Copyright (c) 2001-2009, Andrew Aksyonoff using config file '/usr/local/etc/sphinx.conf'... indexing index 'test_index'... ERROR: index 'test_index': source 'xmlsrc': attribute 'id' required in <sphinx:document> (line=10, pos=0, docid=0). total 0 docs, 0 bytes total 0.000 sec, 0 bytes/sec, 0.00 docs/sec total 0 reads, 0.000 sec, 0.0 kb/call avg, 0.0 msec/call avg total 0 writes, 0.000 sec, 0.0 kb/call avg, 0.0 msec/call avg my script is very simple $stdout.sync = true puts %{<?xml version="1.0" encoding="utf-8"?>} puts %{<sphinx:docset>} puts %{<sphinx:schema>} puts %{<sphinx:field name="body"/>} puts %{</sphinx:schema>} puts %{<sphinx:document id="ba32c02e-79e2-11df-9815-af1b5f766459">} puts %{<body><![CDATA[aaa]]></body>} puts %{</sphinx:document>} puts %{</sphinx:docset>} I use ruby 1.9.2-head, ubuntu 10.04, sphinx 0.9.9 How can I get this to work?

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  • drupal - using variable_set, hook block and hook menu to save config values then print out in custom

    - by bert
    I am trying to 1) implement the hook menu and variable_set in the block hook and to solicit and store configuration values from user, 2) then use retrieve configuration values and 3) pass them out into a template using theme hook when page is shown. However I need a bit of a push on step two and three! // ===================== file: my_module.php function my_module_block($op = 'list', $delta = 0, $edit = array()) { switch($op) { case 'list': $blocks[0] = array( 'info' => t('Find Something'), // required value - this shows up in your list of blocks 'region' => 'left', // default region on the page 'weight' => 0, // position the block vertically within its column. 'visibility' => 1, // permit the block to be displayed for a given user. 'status' => TRUE, // enabled ); return $blocks; break; // case configure case 'configure': // not used ? // case save (save configuration values) case 'save': variable_set('my_module_text_bottom', $edit['my_module_text_bottom']); variable_set('my_module_text_top', $edit['my_module_text_top']); break; } } function my_module_menu(){ $items = array(); // add menu items $items['my_module'] = array( // add a menu item here... ); // administration setting - callback my_module_admin $items['admin/settings/my_module'] = array( 'title' => 'Lookup on Something', 'description' => 'Description of my module settings page', 'page callback' => 'drupal_get_form', 'page arguments' => array('my_module_admin'), 'access arguments' => array('access administration pages'), 'type' => MENU_NORMAL_ITEM, ); return $items; } // setup administrative default values (see: site configiration) function my_module_admin() { $form = array(); $form['my_module_text_top'] = array( '#type' => 'textarea', '#title' => t('Text of top of page'), '#default_value' => variable_get('my_module_text_top', 'my_module_text_top: This is configurable text found in the module configuration.'), '#size' => 1024, '#maxlength' => 1024, '#description' => t("text above the Find a Retailer block."), '#required' => TRUE, ); $form['my_module_text_bottom'] = array( '#type' => 'textarea', '#title' => t('Text at bottom of page'), '#default_value' => variable_get('my_module_text_bottom', 'my_module_text_bottom: This is configurable text found in the module configuration.'), '#size' => 1024, '#maxlength' => 1024, '#description' => t("text below the Find a Retailer block."), '#required' => TRUE, ); return system_settings_form($form); } // registering a theme function my_module_theme(){ return array( 'my_module_show' => array( 'arguments' => array('content' => "hello"), 'template' => 'my_module_show' ), ); } // implementing a theme function theme_my_module_show($content){ $output = '<ul>$content</ul>'; return $output; } function my_module(){ $output = ''; $variables = ""; $output .= theme('my_module_show', $variables); return $output; } // ===================== file: my_module_show.tpl.php print $text1; print $text2;

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  • How to catch a HTTP 404 in Flash

    - by Quandary
    When I execute the (2nd) below code with a wrong url (number '1' added at the URL end), I get the below error. How can I catch this error, in case the url is wrong, so that I can give out an error message to the user ? Error opening URL 'http://localhost/myapp/cgi-bin/savePlanScale.ashx1?NoCache%5FRaumplaner=F7CF6A1E%2D7700%2D8E33%2D4B18%2D004114DEB39F&ScaleString=5%2E3&ModifyFile=data%2Fdata%5Fzimmere03e1e83%2D94aa%2D488b%2D9323%2Dd4c2e8195571%2Exml' httpStatusHandler: [HTTPStatusEvent type="httpStatus" bubbles=false cancelable=false eventPhase=2 status=404] status: 404 Error: Error #2101: Der an URLVariables.decode() übergebene String muss ein URL-kodierter Abfrage-String mit Name/Wert-Paaren sein. at Error$/throwError() at flash.net::URLVariables/decode() at flash.net::URLVariables() at flash.net::URLLoader/onComplete() public static function NotifyASPXofNewScale(nScale:Number) { var strURL:String ="http://localhost/myapp/cgi-bin/savePlanScale.ashx1" // CAUTION: when called from website, RELATIVE url... var scriptRequest:URLRequest = new URLRequest(strURL); var scriptLoader:URLLoader = new URLLoader(); // loader.dataFormat = URLLoaderDataFormat.TEXT; // default, returns as string scriptLoader.dataFormat = URLLoaderDataFormat.VARIABLES; // returns URL variables // loader.dataFormat = URLLoaderDataFormat.BINARY; // to load in images, xml files, and swf instead of the normal methods var scriptVars:URLVariables = new URLVariables(); scriptLoader.addEventListener(Event.COMPLETE, onLoadSuccessful); scriptLoader.addEventListener(IOErrorEvent.IO_ERROR, onLoadError); scriptLoader.addEventListener(HTTPStatusEvent.HTTP_STATUS, httpStatusHandler); scriptLoader.addEventListener(SecurityErrorEvent.SECURITY_ERROR, onSecurityError); scriptVars.NoCache_Raumplaner = cGUID.create(); scriptVars.ScaleString = nScale; scriptVars.ModifyFile = "data/data_zimmere03e1e83-94aa-488b-9323-d4c2e8195571.xml"; scriptRequest.method = URLRequestMethod.GET; scriptRequest.data = scriptVars; scriptLoader.load(scriptRequest); function httpStatusHandler(event:HTTPStatusEvent):void { trace("httpStatusHandler: " + event); trace("status: " + event.status); } function onLoadSuccessful(evt:Event):void { trace("cSaveData.NotifyASPXofNewScale.onLoadSuccessful"); trace("Response: " + evt.target.data); ExternalInterface.call("alert", "Die neue Skalierung wurde erfolgreich gespeichert."); //getURL("javascript:alert(\""+"Die neue Skalierung wurde erfolgreich gespeichert.\\nALLE Instanzen des Browsers schliessen und neu starten, damit die Änderung in Kraft tritt."+"\");"); if (evt.target.data.responseStatus == "YOUR FAULT") { trace("Error: Flash transmitted an illegal scale value."); ExternalInterface.call("alert", "Fehler: Flash konnte die neue Skalierung nicht abspeichern."); } if (evt.target.data.responseStatus == "EXCEPTION") { trace("Exception in ASP.NET: " + evt.target.data.strError); ExternalInterface.call("alert", "Exception in ASP.NET: " + evt.target.data.strError); } } function onLoadError(evt:IOErrorEvent):void { trace("cSaveData.NotifyASPXofNewScale.onLoadError"); trace("Error: ASPX or Transmission error. ASPX responseStatus: " + evt); ExternalInterface.call("alert", "ASPX - oder Übertragungsfehler.\\nASPX responseStatus: " + evt); //getURL("javascript:alert(\"" + "ASPX - oder Übertragungsfehler.\\nASPX responseStatus: " + receiveVars.responseStatus + "\");"); } function onSecurityError(evt:SecurityErrorEvent):void { trace("cSaveData.NotifyASPXofNewScale.onSecurityError"); trace("Security error: " + evt); ExternalInterface.call("alert", "Sicherheitsfehler. Beschreibung: " + evt); } }

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  • How to create an array of User Objects in Powerbuilder?

    - by TomatoSandwich
    The application has many different windows. One is a single 'row' window, which relates to a single row of data in a table, say 'Order'. Another is a 'multiple row' datawindow, where each row in the datawindow relates to a row in 'Order', used for spreadsheet-like data entry Functionality extentions have create a detail table, say 'Suppliers', where an order may require multiple suppliers to fill the order. Normally, suppliers are not required, because they are already in the warehouse (0), or there may need to be an order to a supplier to complete an order (1), or multiple suppliers may need to be contacted (more than one). As a single order is entered, once the items are entered, a User Object is populated depending on the status of the items in the warehouse. If required, this creates a 1-to-many relationship between the order and the "backorder". In the PB side, there is a single object uo_backorder which is created on the window, and is referenced by the window depending on the command (button popup, save, etc) I have been tasked to create the 'backorder' functionality on the spreadsheet-line window. Previously the default options for backorders were used when orders were created from the multiple-row window. A workaround already exists where unconfirmed orders could be opened in the single-row window, and the backorder information manipulated there. However, the userbase wants this functionality on the one window. Since the functionality of uo_backorder already exists, I assumed I could just copy the code from the single-order window, but create an array of uo_backorder objects to cope with multiple rows. I tried the following: forward .. type uo_backorder from popupdwpb within w_order_conv end type end forward global type w_order_conv from singleform .. uo_backorder uo_backorder end type type variables .. uo_backorder iuo_backorders[] end variables .. public function boolean iuo_backorders(); .. long ll_count ll_count = UpperBound(iuo_backorders[]) iuo_backorders[ll_count+1] = uo_backorder //THIS ISN'T RIGHT lb_ok = iuo_backorders[ll_count+1].init('w_backorder_popup', '', '', '', 'd_backorder_popup', sqlca, useTransObj()) return lb_ok end function .. <utility functions> .. type uo_backorder from popupdwpb within w_order_conv integer x = 28 integer y = 28 integer width ... end type on uo_backorder.destroy call popupdwpb::destroy end on The issue I face now is that the code commented "THIS ISN'T RIGHT" isn't correct. It is associating the visual object placed on the face of the main window to each array cell, so anytime I reference the array cell object it's actually referencing the one original object, not the new instances that I (thought) I was creating. If I change the code iuo_backorders[ll_count+1] = create uo_backorder the code doesn't run, saying that it failed to initalize the popup window. I think this is related to the class being called the same thing as the instance. What I want to end up with is an array of uo_backorder objects that I can associate to each row of my datawindow (first row = first cell, etc). I think the issue lays in the fact it's a visual object, and I can't seem to get the window to run without adding a dummy object on the face of the window (functionality from the original single-row window). Since it's a VISUAL object, does the object indeed need to be embedded on the windowface for the window to know what object I'm talking about? If so, how does one create multiple windowface objects (one to many, depending on when a row is added)? Don't hesitate to inquire regarding any more information this issue may require from myself. I have no idea what is 'standard' or 'default' in PB, or what is custom and needs more explaining.

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  • Problem trying to install PyCurl on Mac Snow Leopard

    - by Ldn
    Hi, My app needs to use PyCurl, so i tried to install it on my Mac but i found a lot of problems and error :( Requirement: First of all i've to say that the version of Python working on my Mac is 32 bit based, because i need to use WxPython, that needs 32 bit Python. For doing this i used: defaults write com.apple.versioner.python Prefer-32-Bit -bool yes To install PyCurl i used: sudo env ARCHFLAGS="-arch x86_64" easy_install setuptools pycurl And the terminal returned: Best match: setuptools 0.6c11 Processing setuptools-0.6c11-py2.6.egg setuptools 0.6c11 is already the active version in easy-install.pth Installing easy_install script to /usr/local/bin Installing easy_install-2.6 script to /usr/local/bin Using /Library/Python/2.6/site-packages/setuptools-0.6c11-py2.6.egg Processing dependencies for setuptools Finished processing dependencies for setuptools Searching for pycurl Best match: pycurl 7.16.2.1 Processing pycurl-7.16.2.1-py2.6-macosx-10.6-universal.egg pycurl 7.16.2.1 is already the active version in easy-install.pth Using /Library/Python/2.6/site-packages/pycurl-7.16.2.1-py2.6-macosx-10.6-universal.egg Processing dependencies for pycurl Finished processing dependencies for pycurl so i thought that pycurl was correctly installed and working. But... But when i started my app, python return me an error: python /Users/lorenzodenobili/Desktop/Python/AGGIORNATORE_PY/Dropbox/wxPython/test.py Traceback (most recent call last): File "/Users/lorenzodenobili/Desktop/Python/AGGIORNATORE_PY/Dropbox/wxPython/test.py", line 20, in <module> import pycurl File "build/bdist.macosx-10.6-universal/egg/pycurl.py", line 7, in <module> File "build/bdist.macosx-10.6-universal/egg/pycurl.py", line 6, in __bootstrap__ ImportError: dlopen(/Users/lorenzodenobili/.python-eggs/pycurl-7.16.2.1-py2.6-macosx-10.6-universal.egg-tmp/pycurl.so, 2): no suitable image found. Did find: /Users/lorenzodenobili/.python-eggs/pycurl-7.16.2.1-py2.6-macosx-10.6-universal.egg-tmp/pycurl.so: mach-o, but wrong architecture Yep, there is something quite big that goes wrong. I really don't have any idea on how to solve this error, so i really need your help! thank you so much!!

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  • heroku time zone problem

    - by Ole Morten Amundsen
    Why does Time.now yield the server local time when I have set the another time zone in my environment.rb config.time_zone = 'Copenhagen' I've put this in a view <p> Time.zone <%= Time.zone %> </p> <p> Time.now <%= Time.now %> </p> <p> Time.now.utc <%= Time.now.utc %> </p> <p> Time.zone.now <%= Time.zone.now %> </p> <p> Time.zone.today <%= Time.zone.today %> </p> rendering this result on my app at heroku Time.zone (GMT+01:00) Copenhagen Time.now Mon Apr 26 08:28:21 -0700 2010 Time.now.utc Mon Apr 26 15:28:21 UTC 2010 Time.zone.now 2010-04-26 17:28:21 +0200 Time.zone.today 2010-04-26 Time.zone.now yields the correct result. Do I have to switch from Time.now to Time.zone.now, everywhere? Seems cumbersome. I truly don't care what the local time of the server is, it's giving me loads of trouble due to extensive use of Time.now. Am I misunderstanding anything fundamental here?

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  • RMagic Error in rails, with AM Charts

    - by Elliot
    Hi Everyone, I'm using AMCharts and rails. AMCharts uses the Image Magic lib to export an image of the chart. In rails this is done with the gem, RMagic. In a controller this is implemented with the following controller method: def export width = params[:width].to_i height = params[:height].to_i data = {} img = Magick::Image.new(width, height) height.times do |y| row = params["r#{y}"].split(',') row.size.times do |r| pixel = row[r].to_s.split(':') pixel[0] = pixel[0].to_s.rjust(6, '0') if pixel.size == 2 pixel[1].to_i.times do (data[y] ||= []) << pixel[0] end else (data[y] ||= []) << pixel[0] end end width.times do |x| img.pixel_color(x, y, "##{data[y][x]}") end end img.format = "PNG" send_data(img.to_blob , :disposition => 'inline', :type => 'image/png', :filename => "chart.png?#{rand(99999999).to_i}") end When the controller is accessed however, I receive this error in the page: The change you wanted was rejected. Maybe you tried to change something you didn't have access to. And this error in the logs (its running on heroku btw): ActionController::InvalidAuthenticityToken (ActionController::InvalidAuthenticityToken): /home/heroku_rack/lib/static_assets.rb:9:in `call' /home/heroku_rack/lib/last_access.rb:25:in `call' /home/heroku_rack/lib/date_header.rb:14:in `call' thin (1.0.1) lib/thin/connection.rb:80:in `pre_process' thin (1.0.1) lib/thin/connection.rb:78:in `catch' thin (1.0.1) lib/thin/connection.rb:78:in `pre_process' thin (1.0.1) lib/thin/connection.rb:57:in `process' thin (1.0.1) lib/thin/connection.rb:42:in `receive_data' eventmachine (0.12.6) lib/eventmachine.rb:240:in `run_machine' eventmachine (0.12.6) lib/eventmachine.rb:240:in `run' thin (1.0.1) lib/thin/backends/base.rb:57:in `start' thin (1.0.1) lib/thin/server.rb:150:in `start' thin (1.0.1) lib/thin/controllers/controller.rb:80:in `start' thin (1.0.1) lib/thin/runner.rb:173:in `send' thin (1.0.1) lib/thin/runner.rb:173:in `run_command' thin (1.0.1) lib/thin/runner.rb:139:in `run!' thin (1.0.1) bin/thin:6 /usr/local/bin/thin:20:in `load' /usr/local/bin/thin:20 Rendering /disk1/home/slugs/149903_609c236_eb4f/mnt/public/422.html (422 Unprocessable Entity) Anyone have any idea what's going on here?

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  • Need help modifying C++ application to accept continuous piped input in Linux

    - by GreeenGuru
    The goal is to mine packet headers for URLs visited using tcpdump. So far, I can save a packet header to a file using: tcpdump "dst port 80 and tcp[13] & 0x08 = 8" -A -s 300 | tee -a ./Desktop/packets.txt And I've written a program to parse through the header and extract the URL when given the following command: cat ~/Desktop/packets.txt | ./packet-parser.exe But what I want to be able to do is pipe tcpdump directly into my program, which will then log the data: tcpdump "dst port 80 and tcp[13] & 0x08 = 8" -A -s 300 | ./packet-parser.exe Here is the script as it is. The question is: how do I need to change it to support continuous input from tcpdump? #include <boost/regex.hpp> #include <fstream> #include <cstdio> // Needed to define ios::app #include <string> #include <iostream> int main() { // Make sure to open the file in append mode std::ofstream file_out("/var/local/GreeenLogger/url.log", std::ios::app); if (not file_out) std::perror("/var/local/GreeenLogger/url.log"); else { std::string text; // Get multiple lines of input -- raw std::getline(std::cin, text, '\0'); const boost::regex pattern("GET (\\S+) HTTP.*?[\\r\\n]+Host: (\\S+)"); boost::smatch match_object; bool match = boost::regex_search(text, match_object, pattern); if(match) { std::string output; output = match_object[2] + match_object[1]; file_out << output << '\n'; std::cout << output << std::endl; } file_out.close(); } } Thank you ahead of time for the help!

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  • Advice moving from Eclipse to xCode

    - by Gloin the Dark
    To xCode xPerts: I have been doing Java in Eclipse for about 9 years now and I have really gotten used to the power of the refactoring tools. There are a few operations I do all the time. I am looking for equivalents in xCode since it has better support for objective-c than eclipse. (I'm not at my Mac as I write this. So some of this is from memory. I am still very new to xCode.) 1 "rename". It seems that the xCode equivalent for variables is "edit all in scope". Does this work for files/classes/methods too? 2 "extract local variable" select an expression it creates a local var initialized to that expression. It even creates a usable name for the variable. 3 "extract method" select some code and it will create a method with that code and appropriate parameters/return value. 4 "inline" (variable or method) opposite of extract, inlines all or just the selected occurrence of the selected var or method. 5 "find next" occurrence of selected text. In eclipse I can select some text and hit ctrl-k to go to the next occurrence of that in the file. likewise shift-ctrl-k finds backwards. IIRC the xCode "find next" ignores the selection and only uses what is in the find box. 6 "change method signature" This would be very useful with ocjective-c's named parameter messaging syntax. This is great for adding parameters to a method. 7 "pull-up/push-down" for moving methods up or down the class hierarchy. 8 "move" for moving elements around to other classes etc. Those are the ones that I use all of the time. I have estimated that these tools cut my coding time in half. Are any of these supported in xCode? Thanks in advance for any advice.

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  • Autoscale Rackspace Cloud, Scalr or DIY?

    - by Andre Jay Marcelo-Tanner
    I'm looking into creating a setup on Rackspace Cloud that will allow me to autoscale my webservers (no db) on demand. Preferably using something like response time. I've read into configuration tools like Puppet/Chef, but I'm thinking I can just launch from prepared server images that are ready to go. Is there any tool out there already that can monitor my existing node response times and then launch or scale up new ones based upon certain variables like average X load over Y time? I see there are commercial offerings like Scalr, Rightscale, but how would I do this myself?

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  • Problems to export java home and to find or create .bashrc in Mac OS 10.6

    - by casiopea
    Hello, I need to install a program for my studies and, this program, need java to run. When I try to perform the installation say that cannot find the JDK; since the JDK is already installed by default in mac, the problem is export the java home. I´ve try a lot and I cant do it! I know that I have to add a line in a .bashrc file (or .profile, or .bash_profile) I´ve created all those files, at different times but nothing... I´m a new mac user, but I use Linux too and I dont know what happened, I just need to export java home to perform my work... and is really necessary for me to add environment variables too. Thanks for your help

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  • Converting from CVS to SVN to Hg, does 'hg convert' require pointing to an SVN checkout or just a re

    - by Terry
    As part of migrating full CVS history to Hg, I've used cvs2svn to create an SVN repo in a local directory. It's first level directory structure is: 2010-04-21 09:39 AM <DIR> . 2010-04-21 09:39 AM <DIR> .. 2010-04-21 09:39 AM <DIR> locks 2010-04-21 09:39 AM <DIR> hooks 2010-04-21 09:39 AM <DIR> conf 2010-04-21 09:39 AM 229 README.txt 2010-04-21 11:45 AM <DIR> db 2010-04-21 09:39 AM 2 format 2 File(s) 231 bytes After setting up hg and the convert extension and attempting the convert, I get the following on convert: C:\>hg convert file://localhost/Users/terry/Desktop/repoSVN assuming destination repoSVN-hg initializing destination repoSVN-hg repository file://localhost/Users/terry/Desktop/repoSVN does not look like a CVS checkout file://localhost/Users/terry/Desktop/repoSVN does not look like a Git repo file://localhost/Users/terry/Desktop/repoSVN does not look like a Subversion repo file://localhost/Users/terry/Desktop/repoSVN is not a local Mercurial repo file://localhost/Users/terry/Desktop/repoSVN does not look like a darcs repo file://localhost/Users/terry/Desktop/repoSVN does not look like a monotone repo file://localhost/Users/terry/Desktop/repoSVN does not look like a GNU Arch repo file://localhost/Users/terry/Desktop/repoSVN does not look like a Bazaar repo file://localhost/Users/terry/Desktop/repoSVN does not look like a P4 repo abort: file://localhost/Users/terry/Desktop/repoSVN: missing or unsupported repository I have TortoiseHg installed. For info, hg version reports: Mercurial Distributed SCM (version 1.4.3) This version of Mercurial seems to have some svn bindings if library.zip in the install is to be believed. Do I need to do a checkout and point hg convert to it for this to work properly?

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