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  • Optimization of Function with Dictionary and Zip()

    - by eWizardII
    Hello, I have the following function: def filetxt(): word_freq = {} lvl1 = [] lvl2 = [] total_t = 0 users = 0 text = [] for l in range(0,500): # Open File if os.path.exists("C:/Twitter/json/user_" + str(l) + ".json") == True: with open("C:/Twitter/json/user_" + str(l) + ".json", "r") as f: text_f = json.load(f) users = users + 1 for i in range(len(text_f)): text.append(text_f[str(i)]['text']) total_t = total_t + 1 else: pass # Filter occ = 0 import string for i in range(len(text)): s = text[i] # Sample string a = re.findall(r'(RT)',s) b = re.findall(r'(@)',s) occ = len(a) + len(b) + occ s = s.encode('utf-8') out = s.translate(string.maketrans("",""), string.punctuation) # Create Wordlist/Dictionary word_list = text[i].lower().split(None) for word in word_list: word_freq[word] = word_freq.get(word, 0) + 1 keys = word_freq.keys() numbo = range(1,len(keys)+1) WList = ', '.join(keys) NList = str(numbo).strip('[]') WList = WList.split(", ") NList = NList.split(", ") W2N = dict(zip(WList, NList)) for k in range (0,len(word_list)): word_list[k] = W2N[word_list[k]] for i in range (0,len(word_list)-1): lvl1.append(word_list[i]) lvl2.append(word_list[i+1]) I have used the profiler to find that it seems the greatest CPU time is spent on the zip() function and the join and split parts of the code, I'm looking to see if there is any way I have overlooked that I could potentially clean up the code to make it more optimized, since the greatest lag seems to be in how I am working with the dictionaries and the zip() function. Any help would be appreciated thanks!

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  • Optimizing list comprehension to find pairs of co-prime numbers

    - by user3685422
    Given A,B print the number of pairs (a,b) such that GCD(a,b)=1 and 1<=a<=A and 1<=b<=B. Here is my answer: return len([(x,y) for x in range(1,A+1) for y in range(1,B+1) if gcd(x,y) == 1]) My answer works fine for small ranges but takes enough time if the range is increased. such as 1 <= A <= 10^5 1 <= B <= 10^5 is there a better way to write this or can this be optimized?

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  • Parse large XML file w/ script or use BioPython API ?

    - by jeremy04
    Hey guys this is my first question on here. I'm trying to make a local copy of the UniprotKB in SQL. The UniprotKB is 2.1GB, and it comes in XML and a special text format used by SwissProt Here are my options: 1) Use a SAX parser (XML) - I chose Ruby, and Nokogiri. I started writing the parser, but my initial reaction: how would I map the XML schema to the SAX parser? 2) BioPython - I already have BioSQL/Biopython installed, which literally created my SQL schema for me, and I was able to successfully insert one SwissProt/Uniprot txt file into the database. I'm running it right now (crosses fingers) on the entire 2.1gb. Here is the code I'm running: from Bio import SeqIO from BioSQL import BioSeqDatabase from Bio import SwissProt server = BioSeqDatabase.open_database(driver = "MySQLdb", user = "root", passwd = "", host="localhost", db = "bioseqdb") db = server["uniprot"] iterator = SeqIO.parse(open("/path/to/uniprot_sprot.dat", "r"), "swiss") db.load(iterator) server.commit() Edit: it's now crashing because the transactions are getting locked (since the tables are Innodb) Error Number: 1205 Lock wait timeout exceeded; try restarting transaction. I'm using MySQL version: 5.1.43 Should I switch my database to Postgrelsql ?

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  • Where do I put common code for if and elif?

    - by Vishal
    For the example below: if a == 100: # Five lines of code elif a == 200: # Five lines of code Five lines of code is common and repeating how can I avoid it? I know about putting it a function or if a == 100 or a == 200: # Five lines of code if a == 100: # Do something elif a == 200: # Do something Any other cleaner solution?

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  • Diminishing programmer wants to get back to programming

    - by Marcus TV
    I last programmed actively in 2002. It is almost 8 years now. I learned C and then moved to Visual Basic for our thesis project in the university. I would like to ask suggestions on what programming language should I learn and put to profitability use in areas such as desktop applications, web development, and database applications.

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  • Elegant Disjunctive Normal Form in Django

    - by Mike
    Let's say I've defined this model: class Identifier(models.Model): user = models.ForeignKey(User) key = models.CharField(max_length=64) value = models.CharField(max_length=255) Each user will have multiple identifiers, each with a key and a value. I am 100% sure I want to keep the design like this, there are external reasons why I'm doing it that I won't go through here, so I'm not interested in changing this. I'd like to develop a function of this sort: def get_users_by_identifiers(**kwargs): # something goes here return users The function will return all users that have one of the key=value pairs specified in **kwargs. Here's an example usage: get_users_by_identifiers(a=1, b=2) This should return all users for whom a=1 or b=2. I've noticed that the way I've set this up, this amounts to a disjunctive normal form...the SQL query would be something like: SELECT DISTINCT(user_id) FROM app_identifier WHERE (key = "a" AND value = "1") OR (key = "b" AND value = "2") ... I feel like there's got to be some elegant way to take the **kwargs input and do a Django filter on it, in just 1-2 lines, to produce this result. I'm new to Django though, so I'm just not sure how to do it. Here's my function now, and I'm completely sure it's not the best way to do it :) def get_users_by_identifiers(**identifiers): users = [] for key, value in identifiers.items(): for identifier in Identifier.objects.filter(key=key, value=value): if not identifier.user in users: users.append(identifier.user) return users Any ideas? :) Thanks!

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  • NZEC Run time Error Occured

    - by madan
    import math def gen_caller(a): for z in a: x,y=z if x==1: x=2 if y>=x and y-x<=100000: for i in range(x,y+1): flag=0 for j in range(2,(long(math.sqrt(i))+1)): if(i%j==0): flag=1 break if flag==0: print i print "" n=(int(raw_input())) gen_caller([[(long(raw_input())) for j in range(0,2)] for i in range(0,n) if n<=10])

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  • SQLAlchemy autocommiting?

    - by muckabout
    I have an issue with SQLAlchemy apparently committing. A rough sketch of my code: trans = self.conn.begin() try: assert not self.conn.execute(my_obj.__table__.select(my_obj.id == id)).first() self.conn.execute(my_obj.__table__.insert().values(id=id)) assert not self.conn.execute(my_obj.__table__.select(my_obj.id == id)).first() except: trans.rollback() raise I don't commit, and the second assert always fails! In other words, it seems the data is getting inserted into the database even though the code is within a transaction! Is this assessment accurate?

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  • Rewriting Live TCP/IP (Layer 4) (i.e. Socket Layer) Streams

    - by user213060
    I have a simple problem which I'm sure someone here has done before... I want to rewrite Layer 4 TCP/IP streams (Not lower layer individual packets or frames.) Ettercap's etterfilter command lets you perform simple live replacements of Layer 4 TCP/IP streams based on fixed strings or regexes. Example ettercap scripting code: if (ip.proto == TCP && tcp.dst == 80) { if (search(DATA.data, "gzip")) { replace("gzip", " "); msg("whited out gzip\n"); } } if (ip.proto == TCP && tcp.dst == 80) { if (search(DATA.data, "deflate")) { replace("deflate", " "); msg("whited out deflate\n"); } } http://ettercap.sourceforge.net/forum/viewtopic.php?t=2833 I would like to rewrite streams based on my own filter program instead of just simple string replacements. Anyone have an idea of how to do this? Is there anything other than Ettercap that can do live replacement like this, maybe as a plugin to a VPN software or something? I would like to have a configuration similar to ettercap's silent bridged sniffing configuration between two Ethernet interfaces. This way I can silently filter traffic coming from either direction with no NATing problems. Note that my filter is an application that acts as a pipe filter, similar to the design of unix command-line filters: >[eth0] <----------> [my filter] <----------> [eth1]< What I am already aware of, but are not suitable: Tun/Tap - Works at the lower packet layer, I need to work with the higher layer streams. Ettercap - I can't find any way to do replacements other than the restricted capabilities in the example above. Hooking into some VPN software? - I just can't figure out which or exactly how. libnetfilter_queue - Works with lower layer packets, not TCP/IP streams. Again, the rewriting should occur at the transport layer (Layer 4) as it does in this example, instead of a lower layer packet-based approach. Exact code will help immensely! Thanks!

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  • Django: where do I call settings.configure?

    - by RexE
    The Django docs say that I can call settings.configure instead of having a DJANGO_SETTINGS_MODULE. I would like my website's project to do this. In what file should I put the call to settings.configure so that my settings will get configured at the right time? Edit in response to Daniel Roseman's comment: The reason I want to do this is that settings.configure lets you pass in the settings variables as a kwargs dict, e.g. {'INSTALLED_APPS': ..., 'TEMPLATE_DIRS': ..., ...}. This would allow my app's users to specify their settings in a dict, then pass that dict to a function in my app that augments it with certain settings necessary to make my app work, e.g. adding entries to INSTALLED_APPS. What I envision looks like this. Let's call my app "rexe_app". In wsgi.py, my app's users would do: import rexe_app my_settings = {'INSTALLED_APPS': ('a','b'), ...} updated_settings = rexe_app.augment_settings(my_settings) # now updated_settings is {'INSTALLED_APPS': ('a','b','c'), 'SESSION_SAVE_EVERY_REQUEST': True, ...} settings.configure(**updated_settings)

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  • Google App Engine: TypeError problem with Models

    - by Rosarch
    I'm running Google App Engine on the dev server. Here is my models file: from google.appengine.ext import db import pickle import re re_dept_code = re.compile(r'[A-Z]{2,}') re_course_number = re.compile(r'[0-9]{4}') class DependencyArcHead(db.Model): sink = db.ReferenceProperty() tails = db.ListProperty() class DependencyArcTail(db.Model): courses = db.ListProperty() It gives this error: Traceback (most recent call last): File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 3192, in _HandleRequest self._Dispatch(dispatcher, self.rfile, outfile, env_dict) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 3135, in _Dispatch base_env_dict=env_dict) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 516, in Dispatch base_env_dict=base_env_dict) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 2394, in Dispatch self._module_dict) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 2304, in ExecuteCGI reset_modules = exec_script(handler_path, cgi_path, hook) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 2200, in ExecuteOrImportScript exec module_code in script_module.__dict__ File "main.py", line 19, in <module> from src.Models import Course, findCourse, validateCourse, dictForJSON, clearAndBuildDependencyGraph File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1279, in Decorate return func(self, *args, **kwargs) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1929, in load_module return self.FindAndLoadModule(submodule, fullname, search_path) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1279, in Decorate return func(self, *args, **kwargs) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1831, in FindAndLoadModule description) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1279, in Decorate return func(self, *args, **kwargs) File "C:\Program Files\Google\google_appengine\google\appengine\tools\dev_appserver.py", line 1782, in LoadModuleRestricted description) File "src\Models.py", line 14, in <module> class DependencyArcHead(db.Model): File "src\Models.py", line 17, in DependencyArcHead tails = db.ListProperty() TypeError: __init__() takes at least 2 arguments (1 given) What am I doing wrong?

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  • How to extend the Turbogears 2.1 login functionality

    - by Marc
    I'm using Turbogears 2.1 and repoze.who/what and am having trouble figuring out how to extend the basic authentication functionality. I am essentially attempting to require users to activate their account via an emailed link before they can login. If they try to login without activating their account, I want to display an appropriate error message. The default Turbogears functionality simply displays one message for all errors. I created my own authentication plugin which works fine. It won't allow users to login if they have not activated their account. However, the problem comes when I try to create the form and display custom error messages. How can I go about doing this? Thanks

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  • Image upload and Manipulation in Django

    - by Saransh Mohapatra
    I am trying upload images and than create an thumbnail of it and than store both in S3. After the file has been uploaded i am first uploading it to S3 and than trying to create thumbnail but it doesn't work as than PIL is not able to recognise the image. And secondly if I create the thumbnail first than while uploading original image I get EOF. I think Django allows just once for the uploaded files to be used only once....Please kindly tell me a way to do so....Thanks in advance

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  • Custom Django tag & jQuery

    - by pocoa
    I'm new to Django. Today I created some Django custom tags which is not that hard. But now I wonder what is the best way to include some jQuery or some Javascript code packed into my custom tag definition. What is the regular way to include a custom library into my code? For example: {% faceboxify item %} So assume that it'll create a specific HTML output for Facebox plugin. I just want to learn some elegant way to import this plugin into my code. I want the above definition to be enough for all functionality. Is there any way to do it? I couldn't find any example. Maybe I'm missing something.. Thank you.

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  • How to test custom handler500?

    - by Gr1N
    I write my handler for server errors and define it at root urls.py: handler500 = 'myhandler' And I want to write unittest for testing how it works. For testing I write view with error and define it in test URLs configuration, when I make request to this view in browser I see my handler and receive status code 500, but when I launch test that make request to this view I see stack trace and my test failed. Have you some ideas for testing handler500 by unittests?

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  • Threaded Django task doesn't automatically handle transactions or db connections?

    - by Gabriel Hurley
    I've got Django set up to run some recurring tasks in their own threads, and I noticed that they were always leaving behind unfinished database connection processes (pgsql "Idle In Transaction"). I looked through the Postgres logs and found that the transactions weren't being completed (no ROLLBACK). I tried using the various transaction decorators on my functions, no luck. I switched to manual transaction management and did the rollback manually, that worked, but still left the processes as "Idle". So then I called connection.close(), and all is well. But I'm left wondering, why doesn't Django's typical transaction and connection management work for these threaded tasks that are being spawned from the main Django thread?

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  • How can I configure different worker pools using celery?

    - by Chris R
    I need to deploy a queued execution service with (generally) the following three classes of worker: A periodic, low-priority job class that takes a long time and can be processed serially; these jobs should only use 0..2 workers in the system at most. A periodic, deadline-sensitive job class that take a short to medium amount of time (say, topping out at 5 minutes) An ad-hoc job class, that is higher priority than #1, but can interleave with #2. Any workers from class #2 that are inactive when this type of job comes in should handle it, without ever starving the pool of workers for #2 All three job classes are the same task, the only difference between them is how they're requested; they'll take the same input and generate the same output, but each one has different performance guarantees. How can I implement this using celery?

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  • How to convert list into a string?

    - by PARIJAT
    I have extracted some data from the file and want to write it in the file 2 but the program says 'sequence item 1: expected string, list found', I want to know how I can convert buffer[] i.e. string into sequence, so that it could be saved in file 2. file = open('/ddfs/user/data/k/ktrip_01/hmm.txt','r') file2 = open('/ddfs/user/data/k/ktrip_01/hmm_write.txt','w') buffer = [] rec = file.readlines() for line in rec : field = line.split() print '>',field[0] term = field[0] buffer.append(term) print field[1], field[2], field[6], field[12] term1 = field [1] buffer.append(term1) term2 = field[2] buffer.append[term2] term3 = field[6] buffer.append[term3] term4 = field[12] buffer.append[term4] file2.write(buffer) file.close() file2.close()

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  • How to disable translations during unit tests in django?

    - by Denilson Sá
    I'm using Django Internationalization tools to translate some strings from my application. The code looks like this: from django.utils.translation import ugettext as _ def my_view(request): output = _("Welcome to my site.") return HttpResponse(output) Then, I'm writing unit tests using the Django test client. These tests make a request to the view and compare the returned contents. How can I disable the translations while running the unit tests? I'm aiming to do this: class FoobarTestCase(unittest.TestCase): def setUp(self): # Do something here to disable the string translation. But what? # I've already tried this, but it didn't work: django.utils.translation.deactivate_all() def testFoobar(self): c = Client() response = c.get("/foobar") # I want to compare to the original string without translations. self.assertEquals(response.content.strip(), "Welcome to my site.")

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  • More than one profile in Django?

    - by JPC
    Is it possible to use Django's user authentication features with more than one profile? Currently I have a settings.py file that has this in it: AUTH_PROFILE_MODULE = 'auth.UserProfileA' and a models.py file that has this in it: from django.db import models from django.contrib.auth.models import User class UserProfileA(models.Model): company = models.CharField(max_length=30) user = models.ForeignKey(User, unique=True) that way, if a user logs in, I can easily get the profile because the User has a get_profile() method. However, I would like to add UserProfileB. From looking around a bit, it seems that the starting point is to create a superclass to use as the AUTH_PROFILE_MODULE and have both UserProfileA and UserProfileB inherit from that superclass. The problem is, I don't think the get_profile() method returns the correct profile. It would return an instance of the superclass. I come from a java background (polymorphism) so I'm not sure exactly what I should be doing. Thanks!

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