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• Trouble with applying a nested loop on a list

  - by user1665355

  I have a list consisting of 3 elements: datalist=list(a=datanew1,b=datanew2,c=datanew3) datalist$a : Inv_ret Firm size leverage Risk Liquidity Equity 17 0.04555968 17.34834 0.1323199 0.011292273 0.02471489 0 48 0.01405835 15.86315 0.6931730 0.002491093 0.12054914 0 109 0.04556252 16.91602 0.1714068 0.006235836 0.01194579 0 159 0.04753472 14.77039 0.3885720 0.007126830 0.06373028 0 301 0.03941040 16.94377 0.1805346 0.005450653 0.01723319 0 datalist$b : Inv_ret Firm size leverage Risk Liquidity Equity 31 0.04020832 18.13300 0.09326265 0.015235240 0.01579559 0.005025379 62 0.04439078 17.84086 0.11016402 0.005486982 0.01266566 0.006559096 123 0.04543250 18.00517 0.12215307 0.011154742 0.01531451 0.002282790 173 0.03960613 16.45457 0.10828643 0.011506857 0.02385191 0.009003780 180 0.03139643 17.57671 0.40063094 0.003447233 0.04530395 0.000000000 datalist$c : Inv_ret Firm size leverage Risk Liquidity Equity 92 0.03081029 19.25359 0.10513159 0.01635201 0.025760806 0.000119744 153 0.03280746 19.90229 0.11731517 0.01443786 0.006769735 0.011999005 210 0.04655847 20.12543 0.11622403 0.01418010 0.003125632 0.003802365 250 0.03301018 20.67197 0.13208234 0.01262499 0.009418828 0.021400052 282 0.04355975 20.03012 0.08588316 0.01918129 0.004213846 0.023657440 I am trying to create a cor.test on the datalist above : Cor.tests=sapply(datalist,function(x){ for(h in 1:length(names(x))){ for(i in 1:length(names(x$h[i]))){ for(j in 1:length(names(x$h[j]))){ cor.test(x$h[,i],x$h[,j])$p.value }}}}) But I get an error : Error in cor.test.default(x$h[, i], x$h[, j]) : 'x' must be a numeric vector Any suggestions about what I am doing wrong? P.S. If I simply have one dataframe, datanew1 : Inv_ret Firm size leverage Risk Liquidity Equity 17 0.04555968 17.34834 0.1323199 0.011292273 0.02471489 0 48 0.01405835 15.86315 0.6931730 0.002491093 0.12054914 0 109 0.04556252 16.91602 0.1714068 0.006235836 0.01194579 0 159 0.04753472 14.77039 0.3885720 0.007126830 0.06373028 0 301 0.03941040 16.94377 0.1805346 0.005450653 0.01723319 0 I use this loop : results=matrix(NA,nrow=6,ncol=6) for(i in 1:length(names(datanew1))){ for(j in 1:length(names(datanew1))){ results[i,j]<-cor.test(datanew1[,i],datanew1[,j])$p.value }} And the output is: results : [,1] [,2] [,3] [,4] [,5] [,6] [1,] 0.000000e+00 7.085663e-09 3.128975e-10 3.018239e-02 4.806400e-10 0.475139526 [2,] 7.085663e-09 0.000000e+00 2.141581e-21 0.000000e+00 2.247825e-20 0.454032499 [3,] 3.128975e-10 2.141581e-21 0.000000e+00 2.485924e-25 2.220446e-16 0.108643838 [4,] 3.018239e-02 0.000000e+00 2.485924e-25 0.000000e+00 5.870007e-15 0.006783324 [5,] 4.806400e-10 2.247825e-20 2.220446e-16 5.870007e-15 0.000000e+00 0.558827862 [6,] 4.751395e-01 4.540325e-01 1.086438e-01 6.783324e-03 5.588279e-01 0.000000000 Which is exactly what I want. But I want to get 3 matrices, one for each element of the datalist above.

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• Conditionally colour data points outside of confidence bands in R

  - by D W

  I need to colour datapoints that are outside of the the confidence bands on the plot below differently from those within the bands. Should I add a separate column to my dataset to record whether the data points are within the confidence bands? Can you provide an example please? Example dataset: ## Dataset from http://www.apsnet.org/education/advancedplantpath/topics/RModules/doc1/04_Linear_regression.html ## Disease severity as a function of temperature # Response variable, disease severity diseasesev<-c(1.9,3.1,3.3,4.8,5.3,6.1,6.4,7.6,9.8,12.4) # Predictor variable, (Centigrade) temperature<-c(2,1,5,5,20,20,23,10,30,25) ## For convenience, the data may be formatted into a dataframe severity <- as.data.frame(cbind(diseasesev,temperature)) ## Fit a linear model for the data and summarize the output from function lm() severity.lm <- lm(diseasesev~temperature,data=severity) jpeg('~/Desktop/test1.jpg') # Take a look at the data plot( diseasesev~temperature, data=severity, xlab="Temperature", ylab="% Disease Severity", pch=16, pty="s", xlim=c(0,30), ylim=c(0,30) ) title(main="Graph of % Disease Severity vs Temperature") par(new=TRUE) # don't start a new plot ## Get datapoints predicted by best fit line and confidence bands ## at every 0.01 interval xRange=data.frame(temperature=seq(min(temperature),max(temperature),0.01)) pred4plot <- predict( lm(diseasesev~temperature), xRange, level=0.95, interval="confidence" ) ## Plot lines derrived from best fit line and confidence band datapoints matplot( xRange, pred4plot, lty=c(1,2,2), #vector of line types and widths type="l", #type of plot for each column of y xlim=c(0,30), ylim=c(0,30), xlab="", ylab="" )

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• Create unique identifier for different row-groups

  - by Max van der Heijden

  I want to number certain combinations of row in a dataframe (which is ordered on ID and on Time) tc <- textConnection(' id time end_yn number abc 10 0 1 abc 11 0 2 abc 12 1 3 abc 13 0 1 def 10 0 1 def 15 1 2 def 16 0 1 def 17 0 2 def 18 1 3 ') test <- read.table(tc, header=TRUE) The goal is to create a new column ("journey_nr") that give a unique number to each row based on the journey it belongs to. Journeys are defined as a sequence of rows per id up until to end_yn == 1, also if end_ynnever becomes 1, the journey should also be numbered (see the expected outcome example). It is only possible to have end_yn == 0 journeys at the end of a collection of rows for an ID (as shown at row 4 for id 3). So either no end_yn == 1 has occured for that ID or that happened before the end_yn == 0-journey (see id == abc in the example). I know how to number using the data.table package, but I do not know which columns to combine in order to get the expected outcome. I've searched the data.table-tag on SO, but could not find a similar problem. Expected outcome: id time end_yn number journey abc 10 0 1 1 abc 11 0 2 1 abc 12 1 3 1 abc 13 0 1 2 def 10 0 1 3 def 15 1 2 3 def 16 0 1 4 def 17 0 2 4 def 18 1 3 4

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• Retain numerical precision in an R data frame?

  - by David

  When I create a dataframe from numeric vectors, R seems to truncate the value below the precision that I require in my analysis: data.frame(x=0.99999996) returns 1 (see update 1) I am stuck when fitting spline(x,y) and two of the x values are set to 1 due to rounding while y changes. I could hack around this but I would prefer to use a standard solution if available. example Here is an example data set d <- data.frame(x = c(0.668732936336141, 0.95351462456867, 0.994620622127435, 0.999602102672081, 0.999987126195509, 0.999999955814133, 0.999999999999966), y = c(38.3026509783688, 11.5895099585560, 10.0443344234229, 9.86152339768516, 9.84461434575695, 9.81648333804257, 9.83306725758297)) The following solution works, but I would prefer something that is less subjective: plot(d$x, d$y, ylim=c(0,50)) lines(spline(d$x, d$y),col='grey') #bad fit lines(spline(d[-c(4:6),]$x, d[-c(4:6),]$y),col='red') #reasonable fit Update 1 Since posting this question, I realize that this will return 1 even though the data frame still contains the original value, e.g. > dput(data.frame(x=0.99999999996)) returns structure(list(x = 0.99999999996), .Names = "x", row.names = c(NA, -1L), class = "data.frame") Update 2 After using dput to post this example data set, and some pointers from Dirk, I can see that the problem is not in the truncation of the x values but the limits of the numerical errors in the model that I have used to calculate y. This justifies dropping a few of the equivalent data points (as in the example red line).

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• plot an item map (based on difficulties)

  - by Tyler Rinker

  I have a data set of item difficulties that correspond to items on a questionnaire that looks like this: item difficulty 1 ITEM_6: I DESTROY THINGS BELONGING TO OTHERS 2.31179818 2 ITEM_11: I PHYSICALLY ATTACK PEOPLE 1.95215238 3 ITEM_5: I DESTROY MY OWN THINGS 1.93479536 4 ITEM_10: I GET IN MANY FIGHTS 1.62610855 5 ITEM_19: I THREATEN TO HURT PEOPLE 1.62188759 6 ITEM_12: I SCREAM A LOT 1.45137544 7 ITEM_8: I DISOBEY AT SCHOOL 0.94255210 8 ITEM_3: I AM MEAN TO OTHERS 0.89941812 9 ITEM_20: I AM LOUDER THAN OTHER KIDS 0.72752197 10 ITEM_17: I TEASE OTHERS A LOT 0.61792597 11 ITEM_9: I AM JEALOUS OF OTHERS 0.61288399 12 ITEM_4: I TRY TO GET A LOT OF ATTENTION 0.39947791 13 ITEM_18: I HAVE A HOT TEMPER 0.32209970 14 ITEM_13: I SHOW OFF OR CLOWN 0.31707701 15 ITEM_7: I DISOBEY MY PARENTS 0.20902108 16 ITEM_2: I BRAG 0.19923607 17 ITEM_15: MY MOODS OR FEELINGS CHANGE SUDDENLY 0.06023317 18 ITEM_14: I AM STUBBORN -0.31155481 19 ITEM_16: I TALK TOO MUCH -0.67777282 20 ITEM_1: I ARGUE A LOT -1.15013758 I want to make an item map of these items that looks similar (not exactly) to this (I created this in word but it lacks true scaling as I just eyeballed the scale). It's not really a traditional statistical graphic and so I don't really know how to approach this. I don't care what graphics system this is done in but I am more familiar with ggplot2 and base. I would greatly appreciate a method of plotting this sort of unusual plot. Here's the data set (I'm including it as I was having difficulty using read.table on the dataframe above): DF <- structure(list(item = structure(c(17L, 3L, 16L, 2L, 11L, 4L, 19L, 14L, 13L, 9L, 20L, 15L, 10L, 5L, 18L, 12L, 7L, 6L, 8L, 1L ), .Label = c("ITEM_1: I ARGUE A LOT", "ITEM_10: I GET IN MANY FIGHTS", "ITEM_11: I PHYSICALLY ATTACK PEOPLE", "ITEM_12: I SCREAM A LOT", "ITEM_13: I SHOW OFF OR CLOWN", "ITEM_14: I AM STUBBORN", "ITEM_15: MY MOODS OR FEELINGS CHANGE SUDDENLY", "ITEM_16: I TALK TOO MUCH", "ITEM_17: I TEASE OTHERS A LOT", "ITEM_18: I HAVE A HOT TEMPER", "ITEM_19: I THREATEN TO HURT PEOPLE", "ITEM_2: I BRAG", "ITEM_20: I AM LOUDER THAN OTHER KIDS", "ITEM_3: I AM MEAN TO OTHERS", "ITEM_4: I TRY TO GET A LOT OF ATTENTION", "ITEM_5: I DESTROY MY OWN THINGS", "ITEM_6: I DESTROY THINGS BELONGING TO OTHERS", "ITEM_7: I DISOBEY MY PARENTS", "ITEM_8: I DISOBEY AT SCHOOL", "ITEM_9: I AM JEALOUS OF OTHERS" ), class = "factor"), difficulty = c(2.31179818110545, 1.95215237740899, 1.93479536058926, 1.62610855327073, 1.62188759115818, 1.45137543733965, 0.942552101641177, 0.899418119889782, 0.7275219669431, 0.617925967008653, 0.612883990709181, 0.399477905189577, 0.322099696946661, 0.31707700560997, 0.209021078266059, 0.199236065264793, 0.0602331732900628, -0.311554806052955, -0.677772822413495, -1.15013757942119)), .Names = c("item", "difficulty" ), row.names = c(NA, -20L), class = "data.frame") Thank you in advance.

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• CodePlex Daily Summary for Sunday, May 20, 2012

  CodePlex Daily Summary for Sunday, May 20, 2012Popular ReleasesExtAspNet: ExtAspNet v3.1.6: ExtAspNet - ?? ExtJS ??? ASP.NET 2.0 ???，????? AJAX ?????????? ExtAspNet ????? ExtJS ??? ASP.NET 2.0 ???，????? AJAX ??????????。 ExtAspNet ??????? JavaScript，?? CSS，?? UpdatePanel，?? ViewState，?? WebServices ???????。 ??????: IE 7.0, Firefox 3.6, Chrome 3.0, Opera 10.5, Safari 3.0+ ????：Apache License 2.0 (Apache) ??：http://bbs.extasp.net/ ??：http://demo.extasp.net/ ??：http://doc.extasp.net/ ??：http://extaspnet.codeplex.com/ ??：http://sanshi.cnblogs.com/ ????： +2012-05-20 v3.1.6 -??RowD...totalem: version 2012.05.20.1: Beta version added function to create new empty file added function to create new file from clipboard content (save content of clipboard to file) added feature to direct view file from FTP server added feature to direct edit file from FTP server added feature to direct encrypt and copy files to FTP server added feature to direct copy and decrypt files from FTP servergGrid - Editable jQuery Grid: Initial Version release: The js file is the initial version of gGrid. Below are some of the limitations of the gGrid plugin The grid requires to return a MVC partial view to render the updated grid on screen.WatchersNET CKEditor™ Provider for DotNetNuke®: CKEditor Provider 1.14.05: Whats New Added New Editor Skin "BootstrapCK-Skin" Added New Editor Skin "Slick" Added Dnn Pages Drop Down to the Link Dialog (to quickly link to a portal tab) changes Fixed Issue #6956 Localization issue with some languages Fixed Issue #6930 Folder Tree view was not working in some cases Changed the user folder from User name to User id User Folder is now used when using Upload Function and User Folder is enabled File-Browser Fixed Resizer Preview Image Optimized the oEmbed Pl...PHPExcel: PHPExcel 1.7.7: See Change Log for details of the new features and bugfixes included in this release. BREAKING CHANGE! From PHPExcel 1.7.8 onwards, the 3rd-party tcPDF library will no longer be bundled with PHPExcel for rendering PDF files through the PDF Writer. The PDF Writer is being rewritten to allow a choice of 3rd party PDF libraries (tcPDF, mPDF, and domPDF initially), none of which will be bundled with PHPExcel, but which can be downloaded seperately from the appropriate sites.GhostBuster: GhostBuster Setup (91520): Added WMI based RestorePoint support Removed test code from program.cs Improved counting. Changed color of ghosted but unfiltered devices. Changed HwEntries into an ObservableCollection. Added Properties Form. Added Properties MenuItem to Context Menu. Added Hide Unfiltered Devices to Context Menu. If you like this tool, leave me a note, rate this project or write a review or Donate to Ghostbuster. Donate to GhostbusterC#??????EXCEL??、??、????????：DataPie（??MSSQL 2008、ORACLE、ACCESS 2007）: DataPie_V3.2: V3.2, 2012?5?19? ????ORACLE??????。AvalonDock: AvalonDock 2.0.0795: Welcome to the Beta release of AvalonDock 2.0 After 4 months of hard work I'm ready to upload the beta version of AvalonDock 2.0. This new version boosts a lot of new features and now is stable enough to be deployed in production scenarios. For this reason I encourage everyone is using AD 1.3 or earlier to upgrade soon to this new version. The final version is scheduled for the end of June. What is included in Beta: 1) Stability! thanks to all users contribution I’ve corrected a lot of issues...myCollections: Version 2.1.0.0: New in this version : Improved UI New Metro Skin Improved Performance Added Proxy Settings New Music and Books Artist detail Lot of Bug FixingAspxCommerce: AspxCommerce1.1: AspxCommerce - 'Flexible and easy eCommerce platform' offers a complete e-Commerce solution that allows you to build and run your fully functional online store in minutes. You can create your storefront; manage the products through categories and subcategories, accept payments through credit cards and ship the ordered products to the customers. We have everything set up for you, so that you can only focus on building your own online store. Note: To login as a superuser, the username and pass...SiteMap Editor for Microsoft Dynamics CRM 2011: SiteMap Editor (1.1.1616.403): BUG FIX Hide save button when Titles or Descriptions element is selectedMapWindow 6 Desktop GIS: MapWindow 6.1.2: Looking for a .Net GIS Map Application?MapWindow 6 Desktop GIS is an open source desktop GIS for Microsoft Windows that is built upon the DotSpatial Library. This release requires .Net 4 (Client Profile). Are you a software developer?Instead of downloading MapWindow for development purposes, get started with with the DotSpatial template. The extensions you create from the template can be loaded in MapWindow.DotSpatial: DotSpatial 1.2: This is a Minor Release. See the changes in the issue tracker. Minimal -- includes DotSpatial core and essential extensions Extended -- includes debugging symbols and additional extensions Tutorials are available. Just want to run the software? End user (non-programmer) version available branded as MapWindow Want to add your own feature? Develop a plugin, using the template and contribute to the extension feed (you can also write extensions that you distribute in other ways). Components ...Mugen Injection: Mugen Injection 2.2.1 (WinRT supported): Added ManagedScopeLifecycle. Increase performance. Added support for resolve 'params'.Microsoft Ajax Minifier: Microsoft Ajax Minifier 4.52: Make preprocessor comment-statements nestable; add the ///#IFNDEF statement. (Discussion #355785) Don't throw an error for old-school JScript event handlers, and don't rename them if they aren't global functions.DotNetNuke® Events: 06.00.00: This is a serious release of Events. DNN 6 form pattern - We have take the full route towards DNN6: most notably the incorporation of the DNN6 form pattern with streamlined UX/UI. We have also tried to change all formatting to a div based structure. A daunting task, since the Events module contains a lot of forms. Roger has done a splendid job by going through all the forms in great detail, replacing all table style layouts into the new DNN6 div class="dnnForm XXX" type of layout with chang...LogicCircuit: LogicCircuit 2.12.5.15: Logic Circuit - is educational software for designing and simulating logic circuits. Intuitive graphical user interface, allows you to create unrestricted circuit hierarchy with multi bit buses, debug circuits behavior with oscilloscope, and navigate running circuits hierarchy. Changes of this versionThis release is fixing one but nasty bug. Two functions XOR and XNOR when used with 3 or more inputs were incorrectly evaluating their results. If you have a circuit that is using these functions...LINQ to Twitter: LINQ to Twitter Beta v2.0.25: Supports .NET 3.5, .NET 4.0, Silverlight 4.0, Windows Phone 7.1, Client Profile, and Windows 8. 100% Twitter API coverage. Also available via NuGet! Follow @JoeMayo.BlogEngine.NET: BlogEngine.NET 2.6: Get DotNetBlogEngine for 3 Months Free! Click Here for More Info BlogEngine.NET Hosting - 3 months free! Cheap ASP.NET Hosting - $4.95/Month - Click Here!! Click Here for More Info Cheap ASP.NET Hosting - $4.95/Month - Click Here! If you want to set up and start using BlogEngine.NET right away, you should download the Web project. If you want to extend or modify BlogEngine.NET, you should download the source code. If you are upgrading from a previous version of BlogEngine.NET, please take...BlackJumboDog: Ver5.6.2: 2012.05.07 Ver5.6.2 (1)　Web???????、????????·????????? (2)　Web???????、?????????? COMSPEC PATHEXT WINDIR SERVERADDR SERVERPORT DOCUMENTROOT SERVERADMIN REMOTE_PORT HTTPACCEPTCHRSET HTTPACCEPTLANGUAGE HTTPACCEPTEXCODINGNew ProjectsAkumu Island: Akumu Island is a game being developed by Jared Thomson. At this time, things are still fairly under wraps. The source code is still available though.BasicSocialNetworkingSite: Basic/Simple Social Networking Web Site using C# - ASP.NETCasse Brique: Projet Casse-brique.Cdts.iOS: Cdts iOSCluster2: To be Published...CrowdMOS: CrowdMOS is a set of scripts and tools for performing evaluations of the subjective quality of media such as audio or images using crowdsourcing via Amazon Mechanical Turk. This project is designed to enable low cost, efficient assessments of signal processing algorithms, e.g., compression, denoising, or enhancement, using standard tests such as MOS (Mean Opinion Score) or MUSHRA.Data Frame Loader: A simple C# API for loading tabular dataframes into Microsoft SQL Server database using only a small number of tables to represent any kind of dataframe.Dynamic Segmentation Utility SOE Rest: Dynamic Segmentation Utility SOE Rest for ArcGIS Server 10 (msd)field2012: This is private projectFix soft HyperAero Form: Fix soft Aero Form (HyperAero Edition) works on both xp and Win7 and supports Customizable Animation Effects (On showing and closing form),Gradient Support (Multicolor Gradient Background,Gradient Editor Control),Power Functions (Shutdown,etc with Timer support) ,Aero Glass Support (Extend Margins,Aero Blur,Aero Glow text,Basic Theme Support),Aero Properties (IsWindowsAeroEnabled,AeroColor and opacity),Aero Events,Unlock Hidden Properties (EnableCloseButton, CaptionRenderMode, ActivateOn...Gamer: A program intended to be a PC gamers' companion app by providing features such as: * Customizable system tray menu that lists (favourite/frequent/all) games (as shown in the Windows Games Explorer) for quick launching (and clean desktops). * Ability to edit listings in the Windows Game Explorer * Once these goals are met other handy features can be implemented to increase the value of this app. This program should compliment existing programs used by gamers rather than compete w...gGrid - Editable jQuery Grid: This a jQuery plugin. The plugin will add three buttons Add/Edit/Delete which will need a popup control to add/edit data. Developer using this plugin need to define an HTML table and an HTML DIV which will be used for popup. Also MVC action method to handle the CRUD operation. The plug requires an MVC partial view to be returned from the add edit delete methods to update the table data.HoiChoMuaBan: h?i ch? mua bánmyfirstgit: ???????Nova Code: Nova code is a language to implement processor instructions, states, and other features planned soon for the NEmulation framework. Right now this project will be worked on separately, then integrated into NEmulation.Pocket Book App: Just try it!State Machine .netmf: StateMachineExample for .netmf C# uVersionClientCache: uVersionClientCache is a custom macro to always automatically version (URL querstring parameter) your files based on a MD5 hash of the file contents or file last modified date to prevent issues with client browsers caching an old file after you have changed it.XNA Shader Composer: XNA Shader Composer is a solution for Visual Studio 2010 and XNA 4.0. The goal is to create an environment for learn and create differents HLSL programs.???Disable????: ??????????????errdisable??，????????。

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