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  • Perl Regex Mismatch Issue

    - by Russell C.
    This is a really basic regex question but since I can't seem to figure out why the match is failing in certain circumstances I figured I'd post it to see if anyone else can point out what I'm missing. I'm trying to pull out the 2 sets of digits from strings of the form: 12309123098_102938120938120938 1321312_103810312032123 123123123_10983094854905490 38293827_1293120938129308 I'm using the following code to process each string: if($string && $string =~ /^(\d)+_(\d)+$/) { if(IsInteger($1) && IsInteger($2)) { print "success ('$1','$2')"; } else { print "fail"; } } Where the IsInterger() function is as follows: sub IsInteger { my $integer = shift; if($integer && $integer =~ /^\d+$/) { return 1; } return; } This function seems to work most of the time but fails on the following for some reason: 1287123437_1268098784380 1287123437_1267589971660 Any ideas on why these fail while others succeed? Thanks in advance for your help!

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  • perl regular expressions substitution/replacement using variables with special characters

    - by user961627
    Okay I've checked previous similar questions and I've been juggling with different variations of quotemeta but something's still not right. I have a line with a word ID and two words - the first is the wrong word, the second is right. And I'm using a regex to replace the wrong word with the right one. $line = "ANN20021015_0104_XML_16_21 A$xAS A$xASA"; @splits = split("\t",$line); $wrong_word = quotemeta $splits[1]; $right_word = quotemeta $splits[2]; print $right_word."\n"; print $wrong_word."\n"; $line =~ s/$wrong_word\t/$right_word\t/g; print $line; What's wrong with what I'm doing? Edit The problem is that I'm unable to retain the complete words - they get chopped off at the special characters. This code works perfectly fine for words without special characters. The output I need for the above example is: ANN20021015_0104_XML_16_21 A$xASA A$xASA But what I get is ANN20021015_0104_XML_16_21 A A Because of the $ character.

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  • Perl chomp backwording the string

    - by joe
    my $cmd = "grep -h $text $file2 $file1 | tail -1 | awk '{print \$NF }' "; my $port_number; $port_number =`$cmd`; print "port No : ==$port_number=="; the output is : "port No :== 2323 == and i tried chomp its not working

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  • Question on Split usage in Perl

    - by Nano HE
    Hello. I wrote an small script to use Split() as this, use strict; use warnings; use Data::Dumper; my $fh = \*DATA; while(my $line = <$fh>) { my @values = split(':', $line); foreach my $val (@values) { print "$val\n"; } } __DATA__ 1 : Hello World String10 : NO : A1B2,B3 11 : Hello World String11 : YES : A11B2,B3,B14,B25 A1B2,B3 and A11B2,B3 are characters form like Only One Letter A and One or Two Number 2, 3, 14,25 etc then concatenated with Only One Letter B and one or two Numbers like 2, 3, 14,25. etc Now out put as this 1 Hello World String10 NO A1B2,B3 11 Hello World String11 YES A11B2,B3,B14,B25 How can I hold the last array member from @values and made concatenation and out put as this. 1 Hello World String1 NO A1B2,A1B3 11 Hello World String11 YES A11B2,A11B3,A11B14,A11B25 Appreciated for your comments and replies. [update] My out put need the concatenation followed the rule. A and one or two numbers and joined by B and one or two numbers split by ,

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  • Why does Perl lose foreign characters on Windows input - can this be fixed (if so, how) or is Perl an outdated dinosaur that just can't handle this?

    - by Alex R
    Note below how ã changes to a This is causing me a huge problem as foreign characters show up in URLs, e.g. http://pt.wikipedia.org/wiki/Cão The OS is Windows 7, 64-bit. The Perl is: This is perl 5, version 12, subversion 2 (v5.12.2) built for MSWin32-x64-multi-thread (with 8 registered patches, see perl -V for more detail) Copyright 1987-2010, Larry Wall Binary build 1202 [293621] provided by ActiveState http://www.ActiveState.com Built Sep 6 2010 22:53:42 Additional update: To get around my particular problem, I tried using File::Find instead of piped input. The issue actually gets worse:

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  • passing Perl method results as a reference

    - by arareko
    Some XML::LibXML methods return arrays instead of references to arrays. Instead of doing this: $self->process_items($xml->findnodes('items/item')); I want to do something like: $self->process_items(\$xml->findnodes('items/item')); So that in process_items() I can dereference the original array instead of creating a copy: sub process_items { my ($self, $items) = @_; foreach my $item (@$items) { # do something... } } I can always store the results of findnodes() into an array and then pass the array reference to my own method, but let's say I want to try a reduced version of my code. Is that the correct syntax for passing the method results or should I use something different? Thanks!

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  • Why isn't Perl's File::GlobMapper exporting globmap?

    - by justintime
    The following is pretty well copied from the documentation. use File::GlobMapper qw( globmap ); for my $pair (globmap '<*.tar.gz>' => '<#1.tgz>' ) { } And it gives String found where operator expected at globmapper_test1.pl line 4, near "globmap '<*.tar.gz>'" (Do you need to predeclare globmap?) (Using ActivePerl 5.10.0 on Windows) Side questions - if GlobMapper only exports one function, why is it set so you have to export it explicitly?

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  • Download files using Perl

    - by Neeraj
    I have a project that depends upon some other binaries to be downloaded from web at install time.For this what i do is: if ( file-present-in-src/) # skip that file else # use wget to download the file The problem with this approach is that when I interrupt a download in middle, and do invoke the script next time, the partially downloaded file is also skipped (which is not desired), also I want wget to resume the download of the partially downloaded file. How should I go about it: Possible Solutions I could think of: Let the file to be downloaded to some file say download_tmp. Copy to original file if successful. Handle SIG{'INT'} to write proper cleanup code. But none of these could help resume the partial file download, Any insights?

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  • perl: added hash entry in a subroutine is lost

    - by hansi
    Why is the hash empty on the second call of printHash? my %hash = (); addToHash(\%hash); printHash(\%hash); sub addToHash { my %hash = %{$_[0]}; $hash{"test"} = "test"; printHash(\%hash); } sub printHash { print "printHash: \n"; my %hash = %{$_[0]}; foreach my $key (keys %hash) { print "key: $key, value: $hash{$key}\n"; } } Output: printHash: key: test, value: test printHash:

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  • What is the better Shebang Line to use ?

    - by Anonymous
    What is better/faster to use: #! perl or #! perl.exe or #! fullpath/perl(/perl.exe) or #! partialpath/perl(/perl.exe) ? And, when using "#! perl", when it works on a particular system, what is the print() for showing the full path to perl.exe, that could be included into the Shebang Line ? And, if using a /path/path/perl, are "*" or "..." allowed to be used for the folders ?

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  • perl system command return code

    - by Mel
    I have a script that has been running for over a year and now it is failing: It is creating a command file: open ( FTPFILE, ">get_list"); print FTPFILE "dir *.txt"\n"; print FTPFILE "quit\n"; close FTPFILE; Then I run the system command: $command = "ftp ".$Server." < get_list | grep \"\^-\" >new_list"; $code = system($command); The logic the checks: if ($code == 0) { do stuff } else { log error } It is logging an error. When I print the $code variable, I am getting 256. I used this command to parse the $? variable: $exit_value = $? >> 8; $signal_num = $? & 127; $dumped_core = $? & 128; print "Exit: $exit_value Sig: $signal_num Core: $dumped_core\n"; Results: Exit: 1 Sig: 0 Core: 0 Thanks for any help/insight.

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  • perl DateTime now() problem

    - by Sergey Sinkovskiy
    Having this script use DateTime; use DateTime::Format::Strptime; my $p = DateTime::Format::Strptime->new(pattern => '%F %T', time_zone => 'local'); my $dt1 = DateTime->now(time_zone=>'local')->set_time_zone('UTC'); my $dt2 = $p->parse_datetime('2010-10-23 14:10:02')->set_time_zone('UTC'); print Dumper($dt1->hms); print Dumper($dt2->hms); print Dumper($dt1 > $dt2); The problem is that $dt1 is off by 1 hour. Like $VAR1 = '12:09:55'; $VAR1 = '11:10:02'; $VAR1 = 1; If I remove set_time_zone('UTC') in both cases - dumped values are okay. My feel is that somewhere DST is taken into account unnecessarily, but can't find out. Update: I dumped $dt-time_zone-name and $dt-offset for both and that's what i get. $VAR1 = 'Europe/Kiev'; $VAR1 = 7200; $VAR1 = 'Europe/Kiev'; $VAR1 = 10800; How this could be possible?

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  • Create Directory, 'cd' to it and download a file pipeline in Perl

    - by neversaint
    I have a file that looks like this: ftp://url1/files1.tar.gz dir1 ftp://url2/files2.txt dir2 .... many more... What I want to do are these steps: Create directory based on column 2 Unix 'cd' to that directory Download file with 'wget' based on column1 But how come this approach of mine doesn't work while(<>) { chomp; my ($url,$dir) = split(/\t/,$_); system("mkdir $dir"); system("cd $dir"); # Fail here system("wget $url"); # here too } What's the right way to do it?

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  • [Perl] Retrieve the reference

    - by Sebastian
    Hello, with the hash below, I would like the clients array's reference : my $this = { 'name' => $name, 'max_clients' => $max_clients, 'clients' => () }; I can't do "\$this{'clients'};" to retrieve the reference.

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  • [perl] Efficient processing of large text

    - by jesper
    I have text file that contains over one million urls. I have to process this file in order to assign urls to groups, based on host address: { 'http://www.ex1.com' = ['http://www.ex1.com/...', 'http://www.ex1.com/...', ...], 'http://www.ex2.com' = ['http://www.ex2.com/...', 'http://www.ex2.com/...', ...] } My current basic solution takes about 600mb of RAM to do this (size of file is about 300mb). Could You provide some more efficient ways? My current solution simply reads line by line, extracts host address by regex and put url into hash.

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  • Return from parent sub in Perl

    - by JS Bangs
    I want to write a subroutine which causes the caller to return under certain conditions. This is meant to be used as a shortcut for validating input to a function. What I have so far is: sub needs($$) { my ($condition, $message) = @_; if (not $condition) { print "$message\n"; # would like to return from the *parent* here } return $condition; } sub run_find { my $arg = shift @_; needs $arg, "arg required" or return; needs exists $lang{$arg}, "No such language: $arg" or return; # etc. } The advantage of returning from the caller in needs would then be to avoid having to write the repetitive or return inside run_find and similar functions.

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  • Perl - string matching issue

    - by user2886545
    I have a problem I cannot understand. I have this string: gene_id "siRNA_Z27kG1_20543"transcript_id "siRNA_Z27kG1_20543_X_1";tss_id "TSS124620" And I want to change the gene_id. So, I have the following code: if ($line =~ /;transcript_id "([A-Za-z0-9:\-._]*)(_[oxOX][_.][0-9]*)";/) { $num = $2; $line =~ s/gene_id "([A-Za-z0-9:\-._]*)";/gene_id "$1$num";/g; print $new $line."\n"; } The aim of my code is to change siRNA_Z27kG1_20543 for siRNA_Z27kG1_20543_X_1. However, my code does not produce that output. Why? I can't understand that. My regex needs to be as it is because I match other strings (this time with success). Thanks.

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