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  • Simulate stochastic bipartite network based on trait values of species - in R

    - by Scott Chamberlain
    I would like to create bipartite networks in R. For example, if you have a data.frame of two types of species (that can only interact across species, not within species), and each species has a trait value (e.g., size of mouth in the predator allows who gets to eat which prey species), how do we simulate a network based on the traits of the species (that is, two species can only interact if their traits overlap in values for instance)? UPDATE: Here is a minimal example of what I am trying to do. 1) create phylogenetic tree; 2) simulate traits on the phylogeny; 3) create networks based on species trait values. # packages install.packages(c("ape","phytools")) library(ape); library(phytools) # Make phylogenetic trees tree_predator <- rcoal(10) tree_prey <- rcoal(10) # Simulate traits on each tree trait_predator <- fastBM(tree_predator) trait_prey <- fastBM(tree_prey) # Create network of predator and prey ## This is the part I can't do yet. I want to create bipartite networks, where ## predator and prey interact based on certain crriteria. For example, predator ## species A and prey species B only interact if their body size ratio is ## greater than X.

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  • Installing Security Certifcates for all users on a Windows XP machine

    - by scott-thornton
    Hi, I am required to install two security certifcates on user's PC's to allow them to connect to a certain Australian Government website to perform searchs. I can perform this manually (via Certifcate Import Wizard) when the user has logged into the machine, however when a different user logs in, the certifcates need to be re-installed for that user as well. Q1. Can certifcates ( the file extension is .p12) be installed in such a way that any user using the PC can use the certifcates? Q2. Can the installation of the certifcates be automated ( via SMS? ) to install both certifcates and enter the requried password? Thanks,

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  • Wordpress how to retrieve the post id once its been reset in the page

    - by Scott B
    I'm working with a script in which the postid of the page has been reset via a script include. How can I retrieve the actual true post id and reset its value once it has been changed via script? Here is the script that I'm referring to. Somewhere in there, the postid is being reset so that the page's the_content() call is no longer pulling the current page being viewed. <?php //$featpages = get_option('woo_slider_pages_landing'); $featpages = '579,584,537'; $featarr=split(",",$featpages); $featarr = array_diff($featarr, array("")); $i = 1; foreach ( $featarr as $featured_tab ) { query_posts('page_id=' . $featured_tab); while (have_posts()) : the_post(); ?> <div class="featured-slide" id="slide-<?php echo $i; $i++; ?>" <?php if($i >=3 ){echo 'style="display:none"';} ?>> <div class="text"> <h2><?php if ( get_post_meta($post->ID, "page_desc", $single = true) <> "" ) { echo get_post_meta($post->ID, "page_desc", $single = true); } else { the_title(); } ?></h2> <p><?php if ( get_post_meta($post->ID, "page_excerpt", $single = true) <> "" ) { echo get_post_meta($post->ID, "page_excerpt", $single = true); } else { the_excerpt(); } ?></p> <?php if ( get_post_meta($post->ID, "link_text", $single = true) <> "" and get_post_meta($post->ID, "link_link", $single = true) <> "" ) { ?> <p><a href="<?php echo get_post_meta($post->ID, "link_link", $single = true); ?>" title="<?php echo get_post_meta($post->ID, "link_text", $single = true); ?>"><?php echo get_post_meta($post->ID, "link_text", $single = true); ?></a></p> <?php } ?> </div><!-- /.text --> <?php if ( get_post_meta($post->ID, "image", $single = true) <> "" ) { ?> <div class="image"> <img src="<?php echo get_post_meta($post->ID, "image", $single = true); ?>" alt="<?php the_title(); ?>" class="featured" /> </div><!-- /.image --> <?php } ?> </div><!-- /.featured-slide --> <?php endwhile; } //endforeach ?>

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  • Copy Data from One SQL Server Table to Other in Same Database Without Specifying Columns

    - by Scott
    In SQL Server there is the ability to INSERT all of the data from one table into another using the following statement: INSERT INTO TABLE1 SELECT * FROM TABLE2 When running this on a table with an identity column, even though we have run the command SET IDENTITY_INSERT TABLE1 ON, we get the error: An explicit value for the identity column in table can only be specified when a column list is used and IDENTITY_INSERT is ON This implies that we would have to list off all of the columns within the INSERT in order for this to work properly. In the situation that we are in, we do not have access to the column names, only the list of the tables we need to copy over. Is there any way to get around this limitation?

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  • before_filter not inheriting from parent controller correctly?

    - by Scott
    Sorry if this may be a stupid question but I'm unable get my filters to inherit the way the Rails 3 documentation is saying it should. Specifically I have an Admin controller that was generated via: rails generate controller admin I added only a single action to the admin controller, the before filter & the private filter method class AdminController < ApplicationController before_filter require_admin_creds def index end private def require_admin_creds unless current_user && current_user.admin? flash[:error] = ... redirect_to .... end end end I next then created my nested resources under the admin section with: rails generate scaffold admin/model While my admin index is indeed getting the filter, the admin/model index (or any other actions) are not. What is happening under the hood here that I must have excluded? Thanks in advance.

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  • what is this operator called and what is it used for <=>

    - by Scott
    I recently came across this magical operator when digging into Groovy: <= Groovy has really made me happy with elvis operators ?. and ?: which I use constantly now and very much wish were in Java. With this new operator, I have only found this reference. It seems to make comparators much easier. My question is how does it handle null values and how does it compare non Comparable object. Does this operator have a name, I couldn't find it Googling.

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  • jQuery equivalent of PHP's file_exists()?

    - by Scott B
    In the code snippet below, from my jQuery setup, I need to check if the image file actually exists and if not, I'd like to substitute a default image. Currently if the file does not exist, I just get a broken image placeholder... $('#myTheme').change ( function() { var myImage = $('#myTheme :selected').text(); $('.selectedImage img').attr('src','../wp-content/themes/myTheme/styles/'+myImage+'/screenshot.jpg'); //if screenshot.jpg does not exist, use "../../default.jpg" instead } );

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  • Grouping XSLT nodes via transformation dynamically

    - by scott
    I'm trying to create a page like this via XSLT transformation. Pages page1 page2 Links link1 link2 Here is the xml <siteMenu> <Pages> <title>page1</title> </Pages> <Pages> <title>page2</title> </Pages> <Links> <title>link1</title> </Links> <Links> <title>link2</title> </Links> </siteMenu> I tried using <xsl:for-each select="*"> and <xsl:for-each-group select="*" group-by="@v"> but that gives me every element, but how can i separate them out based on the parent node? I also want to make it dynamic so that if I add another item in siteMenu, it would update the xslt appropriately.

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  • Sequencing ajax requests

    - by Scott Evernden
    I find I sometimes need to iterate some collection and make an ajax call for each element. I want each call to return before moving to the next element so that I don't blast the server with requests - which often leads to other issues. And I don't want to set async to false and freeze the browser. Usually this involves setting up some kind of iterator context that i step thru upon each success callback. I think there must be a cleaner simpler way? Does anyone have a clever design pattern for how to neatly work thru a collection making ajax calls for each item?

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  • Context.Items.Add on an XML return type?

    - by Scott Schluer
    So I have the following code contained within an HttpModule in an application I've been asked to support: app.Context.Response.ContentType = "text/xml"; app.Context.Items.Add("IpixRoomId", ipixRoomId); app.Context.Items.Add("IpixId", ipixId); app.Context.Response.Cache.SetCacheability(HttpCacheability.NoCache); app.Context.RewritePath(rewriteUrl, true); What's the purpose of adding data to Context.Items when the content type is XML? EDIT: For clarification, I'm calling up this URL: http://website.com/virtualtour/1971/6284/panorama2flash.swf I assume the SWF file (I know very little about Flash) makes another call to http://website.com/virtualtour/config.xml. The code I pasted above only executes on calls to config.xml. So since it's only the SWF file and config.xml being requested from the server, I'm a little confused. Can the .SWF file have access to HttpContext.Current.Items? Other than the HttpModule, there is no .NET involved in the code, it's a straight request to the SWF file which triggers a call to config.xml but it seems that those Context.Items contain the data needed to make the SWF file display the right virtual tour. I'm just missing where that link happens. It can't happen in the XML, so maybe in Flash?

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  • Is there a way to customise messages produced by statements in MS SQL Query Analyzer?

    - by Scott Leis
    If I run a simple query in SQL Query Analyzer, like: SELECT * FROM TableName the Messages pane always produces a message like: (30 row(s) affected) If I run a stored procedure with many statements, the messages are useless because there's no indication of what each one relates to. So firstly: Is there a way to customise the default messages on a per-query basis? E.g. I'd like a specific query to produce a message like: TableName query produced [numRowsAffected] results. replacing [numRowsAffected] with the number that would have appeared in the default message. Secondly, is there a way to suppress the default messages on a per-query basis? E.g. I have a local variable of type TABLE, used in several statements. I don't want any message to appear for statements where I'm just deleting data from that variable before re-using it. I'm seeking solutions that work in SQL Server 8.0.

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  • Creating a custom categories widget

    - by Scott B
    The code below is an attempt to take the WP_Widget_Categories class and use it as the basis for a custom categories widget based on the default categories widget. I'm getting no output however and the widget is not showing up in the "Available Widgets" listing. What am I doing wrong? <?php /* Plugin Name: My Categories Widget Version: 1.0 */ class MY_Widget_Categories extends WP_Widget { function MY_Widget_Categories() { $widget_ops = array( 'classname' => 'widget_categories', 'description' => __( "A list or dropdown of categories" ) ); $this->WP_Widget('categories', __('Categories'), $widget_ops); } function widget( $args, $instance ) { extract( $args ); $title = apply_filters('widget_title', empty( $instance['title'] ) ? __( 'Categories' ) : $instance['title']); $c = $instance['count'] ? '1' : '0'; $h = $instance['hierarchical'] ? '1' : '0'; $d = $instance['dropdown'] ? '1' : '0'; echo $before_widget; if ( $title ) echo $before_title . $title . $after_title; $cat_args = array('orderby' => 'name', 'show_count' => $c, 'hierarchical' => $h); if ( $d ) { $cat_args['show_option_none'] = __('Select Category'); wp_dropdown_categories(apply_filters('widget_categories_dropdown_args', $cat_args)); ?> <script type='text/javascript'> /* <![CDATA[ */ var dropdown = document.getElementById("cat"); function onCatChange() { if ( dropdown.options[dropdown.selectedIndex].value > 0 ) { location.href = "<?php echo get_option('home'); ?>/?cat="+dropdown.options[dropdown.selectedIndex].value; } } dropdown.onchange = onCatChange; /* ]]> */ </script> <?php } else { ?> <ul> <?php $cat_args['title_li'] = ''; wp_list_categories(apply_filters('widget_categories_args', $cat_args)); ?> </ul> <?php } echo $after_widget; } function update( $new_instance, $old_instance ) { $instance = $old_instance; $instance['title'] = strip_tags($new_instance['title']); $instance['count'] = $new_instance['count'] ? 1 : 0; $instance['hierarchical'] = $new_instance['hierarchical'] ? 1 : 0; $instance['dropdown'] = $new_instance['dropdown'] ? 1 : 0; return $instance; } function form( $instance ) { //Defaults $instance = wp_parse_args( (array) $instance, array( 'title' => '') ); $title = esc_attr( $instance['title'] ); $count = isset($instance['count']) ? (bool) $instance['count'] :false; $hierarchical = isset( $instance['hierarchical'] ) ? (bool) $instance['hierarchical'] : false; $dropdown = isset( $instance['dropdown'] ) ? (bool) $instance['dropdown'] : false; ?> <p><label for="<?php echo $this->get_field_id('title'); ?>"><?php _e( 'Title:' ); ?></label> <input class="widefat" id="<?php echo $this->get_field_id('title'); ?>" name="<?php echo $this->get_field_name('title'); ?>" type="text" value="<?php echo $title; ?>" /></p> <p><input type="checkbox" class="checkbox" id="<?php echo $this->get_field_id('dropdown'); ?>" name="<?php echo $this->get_field_name('dropdown'); ?>"<?php checked( $dropdown ); ?> /> <label for="<?php echo $this->get_field_id('dropdown'); ?>"><?php _e( 'Show as dropdown' ); ?></label><br /> <input type="checkbox" class="checkbox" id="<?php echo $this->get_field_id('count'); ?>" name="<?php echo $this->get_field_name('count'); ?>"<?php checked( $count ); ?> /> <label for="<?php echo $this->get_field_id('count'); ?>"><?php _e( 'Show post counts' ); ?></label><br /> <input type="checkbox" class="checkbox" id="<?php echo $this->get_field_id('hierarchical'); ?>" name="<?php echo $this->get_field_name('hierarchical'); ?>"<?php checked( $hierarchical ); ?> /> <label for="<?php echo $this->get_field_id('hierarchical'); ?>"><?php _e( 'Show hierarchy' ); ?></label></p> <?php } } function my_categories_init() { register_sidebar_widget(__('My Categories Widget'), 'MY_Widget_Categories'); } add_action("plugins_loaded", "my_categories_init"); ?>

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  • Adding fields to Django form dynamically (and cleanly)

    - by scott
    Hey guys, I know this question has been brought up numerous times, but I'm not quite getting the full implementation. As you can see below, I've got a form that I can dynamically tell how many rows to create. How can I create an "Add Row" link that tells the view how many rows to create? I would really like to do it without augmenting the url... # views.py def myView(request): if request.method == "POST": form = MyForm(request.POST, num_rows=1) if form.is_valid(): return render_to_response('myform_result.html', context_instance=RequestContext(request)) else: form = MyForm(num_rows=1) return render_to_response('myform.html', {'form':form}, context_instance=RequestContext(request)) # forms.py class MyForm(forms.Form): def __init__(self, *args, **kwargs): num_rows = kwargs.pop('num_rows',1) super(MyForm, self).__init__(*args, **kwargs) for row in range(0, num_rows): field = forms.CharField(label="Row") self.fields[str(row)] = field # myform.html http://example.com/myform <form action="." method="POST" accept-charset="utf-8"> <ul> {% for field in form %} <li style="margin-top:.25em"> <span class="normal">{{ field.label }}</span> {{ field }} <span class="formError">{{ field.errors }}</span> </li> {% endfor %} </ul> <input type="submit" value="Save"> </form> <a href="ADD_ANOTHER_ROW?">+ Add Row</a>

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  • DataTemplate / ContentTemplate - exchange controls

    - by Scott Olson
    How can i solve the following (simplified) problem? M-V-VM context. I want to show text at the UI. In case the user has the rights to change the text, i want to use a textbox to manipulate the text. In case the user has no rights, i want to use a label to only show the text. My main problem: how to exchange textbox and label and bind Text resp. Content to the same property in viewmodel. Thanks for your answers Toni

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  • Does a persons' first programming language affect their programming style and if so, how? [closed]

    - by Scott Walsh
    I was speaking to an experienced lecturer recently who told me he could usually tell which programming language a student had learnt to program in by looking at their coding style (more specifically, when programming in other languages to the one which they were most comfortable with). He said that there have been multiple times when he's witnessed students attempted to write C# in Prolog. So I began to wonder, what specific traits do people gain from their first (or favourite) language which are carried over into their overall programming style, and more interestingly what good or bad habits do you think people would benefit from or should be wary of when learning specific language?

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  • Should I still use querystrings for page number, etc, when using ASP.NET 4 URL Routing?

    - by Scott
    I am switching from Intelligencia's UrlRewriter to the new web forms routing in ASP.NET 4.0. I have it working great for basic pages, however, in my e-commerce site, when browsing category pages, I previously used querystrings that were built into my pager control to control paging. An old url (with UrlRewriting) would be: http://www.mysite.com/Category/Arts-and-Crafts_17 I now have a MapPageRoute defined in global.asax as: routes.MapPageRoute("category-browse", "Category/{name}_{id}", ~/CategoryPage.aspx"); This works great. Now, somebody clicks to go to page 2. Previously I would have just tacked on ?page=2 as the querystring. Now, How do I handle this using web forms routing? I know I can do something like: http://www.mysite.com/Category/Arts-and-Crafts_17/page/2 But in addition to page, I can have filters, age ranges, gender, etc. Should I just keep defining routes that handle these variables, or should I continue using querystrings and can I define a route that allows me to use my querstrings like before?

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  • How do I dynamically import a module in App Engine?

    - by Scott Ferguson
    I'm trying to dynamically load a class from a specific module (called 'commands') and the code runs totally cool on my local setup running from a local Django server. This bombs out though when I deploy to Google App Engine. I've tried adding the commands module's parent module to the import as well with no avail (on either setup in that case). Here's the code: mod = __import__('commands.%s' % command, globals(), locals(), [command]) return getattr(mod, command) App Engine just throws an ImportError whenever it hits this. And the clarify, it doesn't bomb out on the commands module. If I have a command like 'commands.cat' it can't find 'cat'.

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  • How to Sort a TreeList in Sitecore 6 in the Source

    - by Scott
    My team uses Sitecore 6 as content management system and then .Net to interface with Sitecore API. In many of our templates we make use of a Treelist. When adding a new item to the selected items Treelist it automatically puts the item at the bottom of the list. In some lists they get very large. In most cases end users would like to see these lists sorted descending by a Date field that is part of the templates that can be added as selected to the Treelist. Programmatically on the .Net side its very easy to handle this using Linq OrderByDescending and all displays great in the site to visitors. What I am trying to figure out is how to get it to display the same in Sitecore Content Editor. I've not found anything from Google search other than there seems to be a SortBy you can specify in the source but I tried this and can't get it to have any effect. Has anyone dealt with this before? Again, main goal is to sort items in a Treelist in the Sitecore Content Editor itself. Thanks for any input anyone has.

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  • Allow a new line anywhere in the regex?

    - by Scott Chamberlain
    I am having a find a replace in a bunch of RTF documents, The basic pattern I need is \{(?:\\\*)?\\field\\fldlock\{\\\*\\fldinst ?MERGEFIELD ?((?:\\.*?)?[\w\[\]]+?)(?:\\.*?)?\}(?:\{\\fldrslt\})?\} However I then found out there could potentialy be a newline before each slash, so it turned in to this. \{(?:\s*\\\*)?\s*\\field\s*\\fldlock\s*\{\s*\\\*\s*\\fldinst\s*MERGEFIELD\s*((?:\\.*?)?[\w\[\]]+?(?:\s*\\.*?)?)?\s*\}(?:\s*\{\s*\\fldrslt\s*\})?\s*\} But then I hit this it fails fees totaling $\protect {\field\fldlock{\*\fldinst MERGEFIELD ENTEROUTSTANDINGVETERINARYF EES}}\plain\f0\fs24\prot Is there way have to have it match a new line anywhere in the search too without adding (?:\r?\n)? everywhere? EDIT To clear up confusion on the new lines. I need to keep the newlines in the document, I only want to remove the newlines if they are inside my match, so in the final example I posted it should replace fees totaling $\protect {\field\fldlock{\*\fldinst MERGEFIELD ENTEROUTSTANDINGVETERINARYF EES}}\plain\f0\fs24\prot with fees totaling $\protect ENTEROUTSTANDINGVETERINARYFEES\plain\f0\fs24\prot

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  • Why are my bound parameters all identical (using Linq)?

    - by Scott Stafford
    When I run this snippet of code: string[] words = new string[] { "foo", "bar" }; var results = from row in Assets select row; foreach (string word in words) { results = results.Where(row => row.Name.Contains(word)); } I get this SQL: -- Region Parameters DECLARE @p0 VarChar(5) = '%bar%' DECLARE @p1 VarChar(5) = '%bar%' -- EndRegion SELECT ... FROM [Assets] AS [t0] WHERE ([t0].[Name] LIKE @p0) AND ([t0].[Name] LIKE @p1) Note that @p0 and @p1 are both bar, when I wanted them to be foo and bar. I guess Linq is somehow binding a reference to the variable word rather than a reference to the string currently referenced by word? What is the best way to avoid this problem? (Also, if you have any suggestions for a better title for this question, please put it in the comments.) Note that I tried this with regular Linq also, with the same results (you can paste this right into Linqpad): string[] words = new string[] { "f", "a" }; string[] dictionary = new string[] { "foo", "bar", "jack", "splat" }; var results = from row in dictionary select row; foreach (string word in words) { results = results.Where(row => row.Contains(word)); } results.Dump(); Dumps: bar jack splat

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  • Webview blank but content is there

    - by Scott Dugas
    I am having trouble displaying a webview. I have a webview inside a custom view. I load this custom view as a subview of the window, and then have an object controller linking a text field to the content of the web view. Once a page is loaded, it loads all the content, but it is visually white. You can click on links. If you go to a Youtube video you can listen to it, but it still displays nothing.

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