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  • Rewriting a for loop in pure NumPy to decrease execution time

    - by Statto
    I recently asked about trying to optimise a Python loop for a scientific application, and received an excellent, smart way of recoding it within NumPy which reduced execution time by a factor of around 100 for me! However, calculation of the B value is actually nested within a few other loops, because it is evaluated at a regular grid of positions. Is there a similarly smart NumPy rewrite to shave time off this procedure? I suspect the performance gain for this part would be less marked, and the disadvantages would presumably be that it would not be possible to report back to the user on the progress of the calculation, that the results could not be written to the output file until the end of the calculation, and possibly that doing this in one enormous step would have memory implications? Is it possible to circumvent any of these? import numpy as np import time def reshape_vector(v): b = np.empty((3,1)) for i in range(3): b[i][0] = v[i] return b def unit_vectors(r): return r / np.sqrt((r*r).sum(0)) def calculate_dipole(mu, r_i, mom_i): relative = mu - r_i r_unit = unit_vectors(relative) A = 1e-7 num = A*(3*np.sum(mom_i*r_unit, 0)*r_unit - mom_i) den = np.sqrt(np.sum(relative*relative, 0))**3 B = np.sum(num/den, 1) return B N = 20000 # number of dipoles r_i = np.random.random((3,N)) # positions of dipoles mom_i = np.random.random((3,N)) # moments of dipoles a = np.random.random((3,3)) # three basis vectors for this crystal n = [10,10,10] # points at which to evaluate sum gamma_mu = 135.5 # a constant t_start = time.clock() for i in range(n[0]): r_frac_x = np.float(i)/np.float(n[0]) r_test_x = r_frac_x * a[0] for j in range(n[1]): r_frac_y = np.float(j)/np.float(n[1]) r_test_y = r_frac_y * a[1] for k in range(n[2]): r_frac_z = np.float(k)/np.float(n[2]) r_test = r_test_x +r_test_y + r_frac_z * a[2] r_test_fast = reshape_vector(r_test) B = calculate_dipole(r_test_fast, r_i, mom_i) omega = gamma_mu*np.sqrt(np.dot(B,B)) # write r_test, B and omega to a file frac_done = np.float(i+1)/(n[0]+1) t_elapsed = (time.clock()-t_start) t_remain = (1-frac_done)*t_elapsed/frac_done print frac_done*100,'% done in',t_elapsed/60.,'minutes...approximately',t_remain/60.,'minutes remaining'

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  • get pure text form odt file in console

    - by naugtur
    I am looking for a small linux tool that would be able to extract text from odt file. It just needs to be human-readable and it can have problems with complicated objects etc. It's almost a duplicate of this question but I need it to be small and have no dependencies on OpenOffice or X server I remember having a 1MB MS-DOS program that could render .doc files quite readibly (with some weird markup getting through from time to time), so i expect it to be possible in the linux world too ;)

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  • Web based KVM management for Ubuntu

    - by Tim
    We've got a single Ubuntu 9.10 root server on which we want to run multiple KVM virtual machines. To administer these virtual machines I'd like a web based KVM management tool, but I don't know which one to choose from the list of tools mentioned on linux-kvm.org. I've used virsh & virt-manager on my desktop, but would like a web interface for the server. I tested ConVirt on my desktop, but it failed to pickup KVM machines from virsh / virt-manager, and I could not get KVM virtual machine import to work (only Xen). oVirt looks good, but I can't find out if and how I can install it on Ubuntu 9.10.. (And I'd really rather not waste another few days on testing stuff that might not work in the end.) Can anyone recommend any good web based KVM management tools that are easy to install on Ubuntu 9.10? I'm looking for something that will also allow me to run other services like apache and postgresql besides hosting virtual machines, so preferably fairly lightweight & no dedicated OS installs. We don't need any professional clustering / migration or anything, just something that will let us create, start, inspect, administer & stop virtual machines from a web page. Best regards, Tim Update: Anyone have any suggestions? It's awfully quiet here..

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  • Pure functional bottom up tree algorithm

    - by Axel Gneiting
    Say I wanted to write an algorithm working on an immutable tree data structure that has a list of leaves as its input. It needs to return a new tree with changes made to the old tree going upwards from those leaves. My problem is that there seems to be no way to do this purely functional without reconstructing the entire tree checking at leaves if they are in the list, because you always need to return a complete new tree as the result of an operation and you can't mutate the existing tree. Is this a basic problem in functional programming that only can be avoided by using a better suited algorithm or am I missing something?

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  • Update successful notice with pure css and a close button

    - by Crays
    Hi guys, i've seen websites that allow you to say update your profile and when the stuff is done, they'll stay in the same page or redirect you to another and with a fancy notice that says "Update successful. click here to close" with a lowered opacity black background and a box in the middle with the text within. I've got most of the stuff, the lowred opacity black background, the middle box with the text and even the click here to close function. But how i did the "Click here to close" function is by using a link. Let's say after updating the profile, my script redirect me to index.php?update=successful then i use $update = $_GET['update']; if ($update == "successful") { echo '<div id="BlackScreen"><p id="MiddleBox">You\'ve successfully update your status!<br><span class="close"><a class="menu" href="index.php">Click to close. </a></span></div></div>'; } so that the lowered opacity background div will be gone, but is there another way to do this? Any tips please?

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  • Virtual destructors for interfaces.

    - by wowus
    Do interfaces need a virtual destructor, or is the auto-generated one fine? For example, which of the following two code snippets is best, and why? class Base { public: virtual void foo() = 0; virtual ~Base() {} }; OR... class Base { public: virtual void foo() = 0; };

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  • Convert Google results object (pure js) to Python object

    - by colwilson
    So I'm trying to use Google Map suggest API to request place name suggestions. Unfortunately I can't find the docs for this bit. Here is an example URI: http://maps.google.com/maps/suggest?q=lon&cp=3&ll=55.0,-3.5&spn=11.9,1.2&hl=en&gl=uk&v=2 which returns: {suggestion:[{query:"London",... I want to use this in python (2.5). Now in proper JSON there would have been quotations around the keys like so: {"suggestion":[{"query":"London",... and I could have used simplejson or something, but as it is I'm a bit stuck. There are two possible solutions here; either I can get to the API code and find an option to return proper JSON, or I do that in python. Any ideas please.

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  • Memory overcommitment on VmWare ESXi 5.0

    - by Tibor
    I would like to understand better the possibilities of VmWare ESXi memory overcommitment. I've read this paper from VmWare, so I am familiar with general concepts, such as hypervisor swapping, memory balooning and page sharing. It seems that a combination of these techniques allows for quite a large degree of overcommitment. However, I am not sure. I am deploying a virtual test lab comprising of 4 identical sets of virtual servers and workstations and a couple of virtual router instances. Overall, I expect to be running around 20 virtual machines with Windows XP, Windows 7 and Ubuntu for workstation hosts as well as CentOS and Windows 2008 Server instances for servers. The problem is, however, that the host machine only has 12GB of RAM and I don't have an option to stuff in some more. I would like to know what is the best option to configure hosts in order to achieve reasonable performance within the constrains. I have these two options: Allocate as little as possible of RAM to each virtual machine. Allocate an extraordinary amount (such as 4 GB per instance) and let the baloon driver do the rest. Something else? Which would work better? Machines will mostly be idle, so I don't have any major performance expectations, but they should run reasonably smoothly nevertheless.

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  • Looking for downloadable demo of a .Net service accessed through a pure JavaScript client, without r

    - by blueberryfields
    I am told that the configuration below is possible, but have had significant difficulty in finding instructions on how to set it up. While I'm trying to muddle my way through this on my own, maybe stack-overflow knows of better sources for documentation: I am looking for a walkthrough, including a downloadable, working example, for setting up the following configuration: Server-side .net application (For .net 2.0 or higher), installed/deployed as a windows' service (that is, not served through IIS), and accessed by a client tool that is completely implemented in JavaScript.

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  • Hyper-V VM's cannot access Host resources, and vice-versa

    - by Agent
    I have several Hyper-V vm's running on this Win2008 R2 Server box, and up until a reboot of the host server, all the VM's were able to access shared folders on the host. Now, they can't even ping the host server. From what I've seen, I need to setup an Internal only network through Virtual Network Manager in Hyper-V. I set this up, then tried to enable the Microsoft Virtual Network Switch Protocol option in this Internal Only NIC, but I get popups saying: Your current selection will also disable the following features: Microsoft virtual network switch protocol Which is absolutely stupid, considering the protocol is what I'm ticking the checkbox to Enable! As of now, on the host, I have 2 NICs: Physical - This NIC on the host machine does have the MVNS protocol enabled Virtual Network Adapter - Created through Hyper-V Virtual Network Manager as an External type of network. Trying to enable MVNS on this NIC also produces the error above. I've tried enabling Client for Microsoft Networks on the physical NIC for IPv6, but everytime I do that, all the VMs lose Internet connectivity and I cannot RDP into them. Anything else I can try?

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  • Recovering database files from a corrupted VHD

    - by Apocalypse9
    We have a SQL server hosted on a virtual machine. Our hosting company updated/restarted the server and for some reason the virtual machines became unbootable. We've spoken to Microsoft and used a few higher level tools to attempt to recover the virtual machines but were unsuccessful. In browsing the file system the database folder doesn't even appear. I'm wondering if there are any lower level tools that might be able to find and copy the database files. As far as I know the physical hard drive is ok, so I'm hoping there may be some way to recover the files themselves even if the rest of the virtual machine file-system is a loss. Obviously we're in a bit of a bind, and any help/ suggestions are very much appreciated.

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  • web site in pure php with clean url

    - by Testadmin
    Hi I have enabled mod_rewrite in my Xampp apache. When I run my php info page, I saw mod_rewrite under Loaded Modules. So I think it's enabled. Then I create a folder clean-url under htdocs. Inside clean-url folder I have 3 files 1) index.php here I put Welcome 2) Test. php 3) .htaccess Here I put RewriteEngine On RewriteRule ^([a-z]+)/([a-z-]+)$ /$1/$2.php [L] I want to run the index page, and by clicking on that hyper link I want to display the test.php page with URL mydomain/clean-url/test I know I am in a wrong path. Does any one help me? Or correct me? ALso i don't know any idea about url rewriting and .htaccess. Please help me.

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  • Deciding to use VM or native install for new hardware

    - by Billy Moon
    I have a Ubuntu 10.10 installation running on hardware. I upgraded the hardware, and am planning to move the system over. Whilst reading the many various ways to do this, I came across tools for making a virtual machine out of a hardware installation. I think this might make managing my server easier in the future if I run it as a virtual machine. Also, I will be able to easily split responsibilities of my server, for example running MySQL on a separate virtual machine hosted on the same physical machine. Is it a good idea to install my production server as a virtual machine inside another thin server installation? What are the pros/cons and pitfalls?

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  • Pure CSS3 show/hide full height div with transition

    - by user1898838
    Dear Stackoverflow readers, I've been breaking my head over something I've seen at Tympanus, and I can't figure out how to properly do such a thing. In this link: http://tympanus.net/Tutorials/FullscreenBookBlock/ you can see that the menu is completely hidden, and only visible when you click on an icon. It has a lovely transition, and it basically roughly sums up what I'm trying to accomplish. The only difference with the above example is that I don't want to completely hide this full-height element, and I'd like to accomplish the above effect with a hover instead of having to click a button. So in an ideal world you'd see a vertical bar, and when you hover over that bar (or click on it with your finger if you're on a tablet), it "opens up" and shows you the full content inside the opened div. Now, I can make a decent bit in html5 and css3, but the above explained effect that I'm trying to accomplish has given me serious headaches, hehe. Does anyone happen to know a tutorial I might have missed that does this exact thing? p.s.: I have tried to take apart Tympanus' html/css, but with the page-fold effect that's also implemented in it I can't seem to figure it out, hence my hope for someone here to help me on my way :)

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  • Deriving a class from an abstract class (C++)

    - by cemregoksu
    I have an abstract class with a pure virtual function f() and i want to create a class inherited from that class, and also override function f(). I seperated the header file and the cpp file. I declared the function f(int) in the header file and the definition is in the cpp file. However, the compiler says the derived class is still abstract. How can i fix it?

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  • How to insert <li> element on <ul> using pure javascript

    - by Damiii
    I am having an issue with javascript and i don't know how to solve it ... Actually my code is working good with jsfiddle, but when i try to insert on my HTML page ,it simply doesnt work anymore ... What i want to, is to add the < li on < ul each time i tried to hit the button named "Add" ! HTML code: .... <td width="50%" valign="top"> <b> SUPER: </b> <ul id="ul"> </ul> </td> .... <input type="submit" value="Add" onclick="add()"/> .... JavaScript code: <script type="text/javascript"> function add(){ var ul = document.getElementById("ul"); var li = document.createElement("li"); li.innerHTML = "LoL"; ul.appendChild(li); } </script> The result with that code : it doesn't add anything on my HTML page when i try to hit the button... Thankfully,

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  • Is there a pure HTML5 emacs mode?

    - by Marcelo Santos
    Question http://stackoverflow.com/questions/1082474/authoring-html5-in-emacs talks about nxml-mode but, from what I read, that can only be used for XHTML5, I want to use emacs with HTML5 (no XML syntax). Is there any mode with auto-indentation, tag/attribute completion, etc.?

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  • How to decouple development server from Internet?

    - by intoxicated.roamer
    I am working in a small set-up where there are 4 developers (might grow to 6 or 8 in cuople of years). I want to set-up an environment in which developers get an internet access but can not share any data from the company on internet. I have thought of the following plan: Set-up a centralized git server (Debian). The server will have an internet access. A developer will only have git account on that server, and won't have any other account on it. Do not give internet access to developer's individual machine (Windows XP/Windows 7). Run a virtual machine (any multi-user OS) on the centralized server (the same one on which git is hosted). Developer will have an account on this virtual machine. He/she can access internet via this virtual machine. Any data-movement between this virtual machine and underlying server, as well as any of the developer's machine, is prohibited. All developers require USB port on their local machine, so that they can burn their code into a microcontroller. This port will be made available only to associated software that dumps the code in a microcontroller (MPLAB in current case). All other softwares will be prohibited from accessing the port. As more developers get added, providing internet support for them will become difficult with this plan as it will slow down the virtual machine running on the server. Can anyone suggest an alternative ? Are there any obvious flaws in the above plan ? Some key details of the server are as below: 1) OS:Debian 2) RAM: 8GB 3) CPU: Intel Xeon E3-1220v2 4C/4T

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  • A pseudo-listener for AlwaysOn Availability Groups for SQL Server virtual machines running in Azure

    - by MikeD
    I am involved in a project that is implementing SharePoint 2013 on virtual machines hosted in Azure. The back end data tier consists of two Azure VMs running SQL Server 2012, with the SharePoint databases contained in an AlwaysOn Availability Group. I used this "Tutorial: AlwaysOn Availability Groups in Windows Azure (GUI)" to help me implement this setup.Because Azure DHCP will not assign multiple unique IP addresses to the same VM, having an AG Listener in Azure is not currently supported.  I wanted to figure out another mechanism to support a "pseudo listener" of some sort. First, I created a CNAME (alias) record in the DNS zone with a short TTL (time to live) of 5 minutes (I may yet make this even shorter). The record represents a logical name (let's say the alias is SPSQL) of the server to connect to for the databases in the availability group (AG). When Server1 was hosting the primary replica of the AG, I would set the CNAME of SPSQL to be SERVER1. When the AG failed over to Server1, I wanted to set the CNAME to SERVER2. Seemed simple enough.(It's important to point out that the connection strings for my SharePoint services should use the CNAME alias, and not the actual server name. This whole thing falls apart otherwise.)To accomplish this, I created identical SQL Agent Jobs on Server1 and Server2, with two steps:1. Step 1: Determine if this server is hosting the primary replica.This is a TSQL step using this script:declare @agName sysname = 'AGTest'set nocount on declare @primaryReplica sysnameselect @primaryReplica = agState.primary_replicafrom sys.dm_hadr_availability_group_states agState   join sys.availability_groups ag on agstate.group_id = ag.group_id   where ag.name = @AGname if not exists(   select *    from sys.dm_hadr_availability_group_states agState   join sys.availability_groups ag on agstate.group_id = ag.group_id   where @@Servername = agstate.primary_replica    and ag.name = @AGname)begin   raiserror ('Primary replica of %s is not hosted on %s, it is hosted on %s',17,1,@Agname, @@Servername, @primaryReplica) endThis script determines if the primary replica value of the AG group is the same as the server name, which means that our server is hosting the current AG (you should update the value of the @AgName variable to the name of your AG). If this is true, I want the DNS alias to point to this server. If the current server is not hosting the primary replica, then the script raises an error. Also, if the script can't be executed because it cannot connect to the server, that also will generate an error. For the job step settings, I set the On Failure option to "Quit the job reporting success". The next step in the job will set the DNS alias to this server name, and I only want to do that if I know that it is the current primary replica, otherwise I don't want to do anything. I also include the step output in the job history so I can see the error message.Job Step 2: Update the CNAME entry in DNS with this server's name.I used a PowerShell script to accomplish this:$cname = "SPSQL.contoso.com"$query = "Select * from MicrosoftDNS_CNAMEType"$dns1 = "dc01.contoso.com"$dns2 = "dc02.contoso.com"if ((Test-Connection -ComputerName $dns1 -Count 1 -Quiet) -eq $true){    $dnsServer = $dns1}elseif ((Test-Connection -ComputerName $dns2 -Count 1 -Quiet) -eq $true) {   $dnsServer = $dns2}else{  $msg = "Unable to connect to DNS servers: " + $dns1 + ", " + $dns2   Throw $msg}$record = Get-WmiObject -Namespace "root\microsoftdns" -Query $query -ComputerName $dnsServer  | ? { $_.Ownername -match $cname }$thisServer = [System.Net.Dns]::GetHostEntry("LocalHost").HostName + "."$currentServer = $record.RecordData if ($currentServer -eq $thisServer ) {     $cname + " CNAME is up to date: " + $currentServer}else{    $cname + " CNAME is being updated to " + $thisServer + ". It was " + $currentServer    $record.RecordData = $thisServer    $record.put()}This script does a few things:finds a responsive domain controller (Test-Connection does a ping and returns a Boolean value if you specify the -Quiet parameter)makes a WMI call to the domain controller to get the current CNAME record value (Get-WmiObject)gets the FQDN of this server (GetHostEntry)checks if the CNAME record is correct and updates it if necessary(You should update the values of the variables $cname, $dns1 and $dns2 for your environment.)Since my domain controllers are also hosted in Azure VMs, either one of them could be down at any point in time, so I need to find a DC that is responsive before attempting the DNS call. The other little thing here is that the CNAME record contains the FQDN of a machine, plus it ends with a period. So the comparison of the CNAME record has to take the trailing period into account. When I tested this step, I was getting ACCESS DENIED responses from PowerShell for the Get-WmiObject cmdlet that does a remote lookup on the DC. This occurred because the SQL Agent service account was not a member of the Domain Admins group, so I decided to create a SQL Credential to store the credentials for a domain administrator account and use it as a PowerShell proxy (rather than give the service account Domain Admins membership).In SQL Management Studio, right click on the Credentials node (under the server's Security node), and choose New Credential...Then, under SQL Agent-->Proxies, right click on the PowerShell node and choose New Proxy...Finally, in the job step properties for the PowerShell step, select the new proxy in the Run As drop down.I created this two step Job on both nodes of the Availability Group, but if you had more than two nodes, just create the same job on all the servers. I set the schedule for the job to execute every minute.When the server that is hosting the primary replica is running the job, the job history looks like this:The job history on the secondary server looks like this: When a failover occurs, the SQL Agent job on the new primary replica will detect that the CNAME needs to be updated within a minute. Based on the TTL of the CNAME (which I said at the beginning was 5 minutes), the SharePoint servers will get the new alias within five minutes and should be able to reconnect. I may want to shorten up the TTL to reduce the time it takes for the client connections to use the new alias. Using a DNS CNAME and a SQL Agent Job on all servers hosting AG replicas, I was able to create a pseudo-listener to automatically change the name of the server that was hosting the primary replica, for a scenario where I cannot use a regular AG listener (in this case, because the servers are all hosted in Azure).    

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  • Windows 2008, IIS7 and virtual directories

    - by Thomas
    I created a virtual directory called test (C:\test) under the Default Web Site and added two simple test files (one html and one aspx). I thought I had to add the IUSR and NetworkService (for application pools) to C:\test and grant the users appropriate rights in order for IIS7 to serve the content. It appears that is not the case at all as I can view any files in the virtual directory (even if I convert it to an application) without changing or adding any security settings on the C:\test folder. I just installed IIS7 with ASP.NET on Windows 2008 without changing any settings besides adding the virtual directory. Am I missing something? Even my book on IIS7 states that the user accounts should be added an appropriate rights should be added. I added the following to answer the comments: I am referencing the file using a public IP http://xxx.xxx.xxx.xxx/test/one.html and the IP nor localhost is in my trusted sites. I am not signed in on the server at all as I am accessing the content from my home machine and the content is on my production server. The following users/groups have access to c:\test on the server (Creator Owner, System, Administrators, Users) and the app pool is running under the default NetworkService account. I basically installed win2008, added the IIS role with asp.net. I then opened IIS7, added a virtual directory and copied two files to the directory to test. It works which is great but I want to understand why it works. How is it that IIS7 can access files in the C:\test folder without any permissions set.

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  • Virtual SMTP not sending mails

    - by DoStuffZ
    Hi I have been googling for the better part of the last two hours without finding any conclusion. My mails are not being sent from the production webserver. If I stop/start the Virtual SMTP I get this in the event log: No usable TLS server certificate for SMTP virtual server instance '1' could be found. TLS will be disabled for this virtual-server. We recently updated the webapplication running and I assume something went amiss during that. Googling the message straight up gave me a list that just as well could have been in greek. I found a security certificate on the server, installing that gave no change. I basicly played russian roulette with the certificate file (.cer), though I was somewhat certain it would not have a negative effect. (Russian roulette with a 6 chamber gun and 2 bullets.) I found a .pfx in our local documentation folder, though I'm far from certain that to have a positive effect. (6 chambers and 5 bullets). I found a site describing how the Virtual SMTP - Properties - Access - should have a button saying Certificates. I have a text saying "Did not find any TLS certificates" and a grayed out tick box saying "Require TLS certificate". I found the TLS being SSL ver3.1+ (3.1-3.3). So question goes - How do I enable the SMTP to once again send emails, like before.

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  • high virtual memory usage in openvz?

    - by freedrull
    We're having a lot of memory problems on a new OpenVZ box. It is supposed to have 1 gig of memory, I'm not sure how much of that is burstable or guaranteed memory. Programs in general seem to take up more virtual memory than they do on my box at home, and on our other OpenVZ box. I wrote this simple C program: #include <stdio.h> #include <stdlib.h> int main(){ char *thingy = malloc(500); getchar(): return 0; } So it simply allocates 500 bytes and then returns. I ran the program on 3 computers. On my home machine, and our other OpenVZ box it shows about 1k bytes of virtual memory being used. On the new problematic machine its about 3k. I know this is just virtual memory and not resident memory, but why is this machine allocating so much virtual memory? Are there some settings I need to adjust to the OpenVZ memory settings? I tried changing the stack size with ulimit -s 256 and restarting some demons, but I still saw the same results. I'm doing all of my monitoring with htop, is this even a good program to use with a OpenVZ vps? I've read I should be parsing the output of /proc/user_beancounters intead or something.

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