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• Error 2013: Lost connection to MySQL server during query when executing CHECK TABLE FOR UPGRADE

  - by Dean Richardson

  I just upgraded Ubuntu from 11.10 to 12.04. My rails app now returns the (passenger) error "Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (111) (Mysql2::Error)". I get a similar error when I try to access mysql at the command line on my Ubuntu server using mysql -u root -p. I have mysql-server 5.5 installed. I've checked and mysql is not running. When I try to restart it, it fails. Here are some key lines from the tail of /var/log/syslog after an attempted restart: dean@dgwjasonfried:/etc/mysql$ tail -f /var/log/syslog Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Looking for 'mysqlcheck' as: /usr/bin/mysqlcheck Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: Running 'mysqlcheck' with connection arguments: '--port=3306' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' '--host=localhost' '--socket=/var/run/mysqld/mysqld.sock' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: /usr/bin/mysqlcheck: Got error: 2013: Lost connection to MySQL server during query when executing 'CHECK TABLE ... FOR UPGRADE' Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: FATAL ERROR: Upgrade failed Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: molex_app_development.assets OK Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5107]: molex_app_development.ecd_types OK Mar 7 08:55:27 dgwjasonfried /etc/mysql/debian-start[5124]: Checking for insecure root accounts. Mar 7 08:55:27 dgwjasonfried kernel: [ 7551.769657] init: mysql main process (5064) terminated with status 1 Mar 7 08:55:27 dgwjasonfried kernel: [ 7551.769697] init: mysql respawning too fast, stopped Here is most of /etc/mysql/my.cnf: Remember to edit /etc/mysql/debian.cnf when changing the socket location. [client] port = 3306 socket = /var/run/mysqld/mysqld.sock Here is entries for some specific programs The following values assume you have at least 32M ram This was formally known as [safe_mysqld]. Both versions are currently parsed. [mysqld_safe] socket = /var/run/mysqld/mysqld.sock nice = 0 [mysqld] Basic Settings user = mysql pid-file = /var/run/mysqld/mysqld.pid socket = /var/run/mysqld/mysqld.sock port = 3306 basedir = /usr datadir = /var/lib/mysql tmpdir = /tmp lc-messages-dir = /usr/share/mysql skip-external-locking Instead of skip-networking the default is now to listen only on localhost which is more compatible and is not less secure. bind-address = 127.0.0.1 And here are permissions for var/run/mysqld/mysqld.sock: srwxrwxrwx 1 mysql mysql 0 Mar 7 09:18 mysqld.sock I'd be grateful for any suggestions the community might have. I reviewed the related questions here and attempted some of the fixes offered but to no avail. Thanks! Dean Richardson Update: Thanks to quanta's suggestion, I looked at the /var/log/mysql/error.log file. I found error messages relating to pointers, fatal signals, and more stuff that I really couldn't make much sense of. I also found mysql man page references, however. One suggested that I try starting mysqld with the --innodb_force_recovery=# option, then attempt to dump (or drop) the offending/corrupted database or table. I worked through the escalating option levels one-by-one (innodb_force_recovery=1, innodb_force_recovery=2, etc.) This allowed me to successfully run mysql -u root -p from the command line and execute several commands. I was able to run queries on my production database, but any attempt to query, dump, or even drop my development database raised an error and led to me losing the connection to mysql. So I've made progress, but until I'm somehow able to drop or repair my development db I'm still unable to get my app to load. Any further advice or suggestions? Thanks! Dean Update: Right after running sudo mysqld --innodb_force_recover=1 from the command line, the error.log contains this: Right after retrying sudo mysqld --innodb_force_recover=1, The error.log file shows this: 130308 4:55:39 [Note] Plugin 'FEDERATED' is disabled. 130308 4:55:39 InnoDB: The InnoDB memory heap is disabled 130308 4:55:39 InnoDB: Mutexes and rw_locks use GCC atomic builtins 130308 4:55:39 InnoDB: Compressed tables use zlib 1.2.3.4 130308 4:55:39 InnoDB: Initializing buffer pool, size = 128.0M 130308 4:55:39 InnoDB: Completed initialization of buffer pool 130308 4:55:39 InnoDB: highest supported file format is Barracuda. InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 130308 4:55:39 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 130308 4:55:40 InnoDB: Waiting for the background threads to start 130308 4:55:41 InnoDB: 1.1.8 started; log sequence number 10259220 130308 4:55:41 InnoDB: !!! innodb_force_recovery is set to 1 !!! 130308 4:55:41 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306 130308 4:55:41 [Note] - '127.0.0.1' resolves to '127.0.0.1'; 130308 4:55:41 [Note] Server socket created on IP: '127.0.0.1'. 130308 4:55:41 [Note] Event Scheduler: Loaded 0 events 130308 4:55:41 [Note] mysqld: ready for connections. Version: '5.5.29-0ubuntu0.12.04.2' socket: '/var/run/mysqld/mysqld.sock' port: 3306 (Ubuntu) Then after mysql -u root -p and mysql> drop database molex_app_development; ERROR 2013 (HY000): Lost connection to MySQL server during query mysql> the error.log contains: dean@dgwjasonfried:/var/log/mysql$ tail -f error.log /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f6a3ff9ecbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f6a1c004bd8): is an invalid pointer Connection ID (thread ID): 1 Status: NOT_KILLED The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains information that should help you find out what is causing the crash. 130308 4:55:39 [Note] Plugin 'FEDERATED' is disabled. 130308 4:55:39 InnoDB: The InnoDB memory heap is disabled 130308 4:55:39 InnoDB: Mutexes and rw_locks use GCC atomic builtins 130308 4:55:39 InnoDB: Compressed tables use zlib 1.2.3.4 130308 4:55:39 InnoDB: Initializing buffer pool, size = 128.0M 130308 4:55:39 InnoDB: Completed initialization of buffer pool 130308 4:55:39 InnoDB: highest supported file format is Barracuda. InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 130308 4:55:39 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... 130308 4:55:40 InnoDB: Waiting for the background threads to start 130308 4:55:41 InnoDB: 1.1.8 started; log sequence number 10259220 130308 4:55:41 InnoDB: !!! innodb_force_recovery is set to 1 !!! 130308 4:55:41 [Note] Server hostname (bind-address): '127.0.0.1'; port: 3306 130308 4:55:41 [Note] - '127.0.0.1' resolves to '127.0.0.1'; 130308 4:55:41 [Note] Server socket created on IP: '127.0.0.1'. 130308 4:55:41 [Note] Event Scheduler: Loaded 0 events 130308 4:55:41 [Note] mysqld: ready for connections. Version: '5.5.29-0ubuntu0.12.04.2' socket: '/var/run/mysqld/mysqld.sock' port: 3306 (Ubuntu) 130308 4:58:23 [ERROR] Incorrect definition of table mysql.proc: expected column 'comment' at position 15 to have type text, found type char(64). 130308 4:58:23 InnoDB: Assertion failure in thread 140168992810752 in file fsp0fsp.c line 3639 InnoDB: We intentionally generate a memory trap. InnoDB: Submit a detailed bug report to http://bugs.mysql.com. InnoDB: If you get repeated assertion failures or crashes, even InnoDB: immediately after the mysqld startup, there may be InnoDB: corruption in the InnoDB tablespace. Please refer to InnoDB: http://dev.mysql.com/doc/refman/5.5/en/forcing-innodb-recovery.html InnoDB: about forcing recovery. 10:58:23 UTC - mysqld got signal 6 ; This could be because you hit a bug. It is also possible that this binary or one of the libraries it was linked against is corrupt, improperly built, or misconfigured. This error can also be caused by malfunctioning hardware. We will try our best to scrape up some info that will hopefully help diagnose the problem, but since we have already crashed, something is definitely wrong and this may fail. key_buffer_size=16777216 read_buffer_size=131072 max_used_connections=1 max_threads=151 thread_count=1 connection_count=1 It is possible that mysqld could use up to key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 346681 K bytes of memory Hope that's ok; if not, decrease some variables in the equation. Thread pointer: 0x7f7ba4f6c2f0 Attempting backtrace. You can use the following information to find out where mysqld died. If you see no messages after this, something went terribly wrong... stack_bottom = 7f7ba3065e60 thread_stack 0x30000 mysqld(my_print_stacktrace+0x29)[0x7f7ba3609039] mysqld(handle_fatal_signal+0x483)[0x7f7ba34cf9c3] /lib/x86_64-linux-gnu/libpthread.so.0(+0xfcb0)[0x7f7ba2220cb0] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x35)[0x7f7ba188c425] /lib/x86_64-linux-gnu/libc.so.6(abort+0x17b)[0x7f7ba188fb8b] mysqld(+0x65e0fc)[0x7f7ba37160fc] mysqld(+0x602be6)[0x7f7ba36babe6] mysqld(+0x635006)[0x7f7ba36ed006] mysqld(+0x5d7072)[0x7f7ba368f072] mysqld(+0x5d7b9c)[0x7f7ba368fb9c] mysqld(+0x6a3348)[0x7f7ba375b348] mysqld(+0x6a3887)[0x7f7ba375b887] mysqld(+0x5c6a86)[0x7f7ba367ea86] mysqld(+0x5ae3a7)[0x7f7ba36663a7] mysqld(_Z15ha_delete_tableP3THDP10handlertonPKcS4_S4_b+0x16d)[0x7f7ba34d3ffd] mysqld(_Z23mysql_rm_table_no_locksP3THDP10TABLE_LISTbbbb+0x568)[0x7f7ba3417f78] mysqld(_Z11mysql_rm_dbP3THDPcbb+0x8aa)[0x7f7ba339780a] mysqld(_Z21mysql_execute_commandP3THD+0x394c)[0x7f7ba33b886c] mysqld(_Z11mysql_parseP3THDPcjP12Parser_state+0x10f)[0x7f7ba33bb28f] mysqld(_Z16dispatch_command19enum_server_commandP3THDPcj+0x1380)[0x7f7ba33bc6e0] mysqld(_Z24do_handle_one_connectionP3THD+0x1bd)[0x7f7ba346119d] mysqld(handle_one_connection+0x50)[0x7f7ba3461200] /lib/x86_64-linux-gnu/libpthread.so.0(+0x7e9a)[0x7f7ba2218e9a] /lib/x86_64-linux-gnu/libc.so.6(clone+0x6d)[0x7f7ba1949cbd] Trying to get some variables. Some pointers may be invalid and cause the dump to abort. Query (7f7b7c004b60): is an invalid pointer Connection ID (thread ID): 1 Status: NOT_KILLED The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains information that should help you find out what is causing the crash. --Dean

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• How to mount a LOFS in Solaris that doesn’t cross mountpoints

  - by jcea

  I need to access my "root" ZFS dataset to delete a file under "/var". But "/var" is overlayed by another ZFS dataset. Since these are system datasets I can't "umount" them while the machine is running. And I want to avoid to reboot the system in "failsafe" mode, since this is a production machine. Teorically ZFS would refuse to mount "/var" dataset over the underlying "/var", because it is not empty. But it works, possibly because they are system datasets mounted early in the boot process. But having the underlying "/var" not empty is preventing me to create an ABE (Alternate Boot Environment), so patching is risky, and I can't upgrade my system using Live Upgrade. The machine is remote. I have an IP KVM, but I rather prefer to avoid booting this machine in "failsafe" mode, if I can. I know there is a file in "/var/" because I can snapshot the "root" dataset and check it. But snapshots are read-only, so I can't get rid of the file. I tried "mkdir /tmp/zzz; mount -F lofs / /tmp/zzz", but when I go to "/tmp/zzz/var", I see the "/var" dataset, not the underlying "root" dataset. That is, the LOFS is crossing mountpoints. I would usually like it, but not this time!. Any suggestion, beside rebooting the machine in "failsafe" and mess with it thru the IP KVM?

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• ORA-12705: Cannot access NLS data files or invalid environment specified

  - by Mohit Nanda

  I am getting this error while trying to create a connection pool, on my Oracle database, Oracle 10gR2. java.sql.SQLException: ORA-00604: error occurred at recursive SQL level 1 ORA-12705: Cannot access NLS data files or invalid environment specified I am able to connect to the database over sqlplus & iSQLPlus client, but when I try to connect using this Java program, I get this error just when the connection pool is to be initialised and it does not initialise the connection pool. Can someone please help me resolving it? DB Version: Oracle version 10.2.0.1 OS: RHEL 4.0 Here is a barebone, java code which is throwing this error, while connecting to my database. import java.sql.*; public class connect{ public static void main(String[] args) { Connection con = null; CallableStatement cstmt = null; String url = "jdbc:oracle:thin:@hostname:1521:oracle"; String userName = "username"; String password = "password"; try { System.out.println("Registering Driver ..."); DriverManager.registerDriver (new oracle.jdbc.driver.OracleDriver()); System.out.println("Creating Connection ..."); con = DriverManager.getConnection(url, userName, password); System.out.println("Success!"); } catch(Exception ex) { ex.printStackTrace(System.err); } finally { if(cstmt != null) try{cstmt.close();}catch(Exception _ex){} if(con != null) try{con.close();}catch(Exception _ex){} } } }

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• iSCSI errors continue after removing inaccessible target portal

  - by Ansgar Wiechers

  By mistake I entered an iSCSI target portal address in the iSCSI Initiator on one of our virtual servers that does not have an address in the network range used for iSCSI. This caused the following errors/warnings to appear in the eventlog: Log Name: System Source: MSiSCSI Event ID: 113 Level: Warning Description: iSCSI discovery via SendTargets failed with error code 0xefff0003 to target portal *192.168.23.42 0003260 Root\ISCSIPRT\0000_0 . Log Name: System Source: iScsiPrt Event ID: 1 Level: Error Description: Initiator failed to connect to the target. Target IP address and TCP Port number are given in dump data. Log Name: System Source: iScsiPrt Event ID: 70 Level: Error Description: Error occurred when processing iSCSI logon request. The request was not retried. Error status is given in the dump data. So far that's expected beahvior, so I removed the portal from the iSCSI Initiator as described in MSKB 976072. However, the errors/warnings keep appearing every hour, even though neither iSCSI Initiator GUI nor iscscli show any portals: C:\>iscsicli ListTargetPortals Microsoft iSCSI Initiator Version 6.1 Build 7601 The operation completed successfully. The problem persists after rebooting the server. Uninstalling the Microsoft iSCSI Initiator device via devmgmt.msc as well as changing the Initiator parameters like this: [HKLM\SYSTEM\CurrentControlSet\Control\Class\{4D36E97B-E325-11CE-BFC1-08002BE10318}] "MaxPendingRequests"=dword:00000001 "MaxConnectionRetries"=dword:00000001 "MaxRequestHoldTime"=dword:00000005 didn't help either. Each change was followed by a reboot. Disabling the device does prevent the errors/warnings from re-appearing, of course, but I'd rather not have to resort to this. How can I prevent those errors and warnings from appearing (short of disabling the initiator device or re-installing the server)? What am I missing? Environment: The virtual machine runs on a Hyper-V cluster managed by SCVMM 2012. Hosts and guests run Windows Server 2008 R2 SP1. The physical machines are Dell PowerEdge M710HD blades.

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• Desktop SATA drives in SATA <-> FC array

  - by chris

  Let's assume you've got a box like one of these with space for 24 SATA disks. What are the best bits of advice for deploying this? For instance, should you be greedy and go for the 1.5 or 2tb disks or are they just not reliable enough to be used in an array like this and you should stick with 640gb or 750gb disks instead? Also, I know that FC (or generically, "enterprise class") disks have a different error recovery strategy than desktop disks. An enterprise disk will fail a read quickly and report to the controller that it wasn't able to read that block, and the RAID controller will quickly regenerate the info from the parity disk and mark the block as bad. A desktop disk, on the other hand, will try and try and try again to get the data, and in pathological cases this may cause a raid controller to fail the whole disk because the read operation times out. So there are a couple aspects to this question: What's the best sort of disk to get today? (ie specific disks on the market in Feb 2010) Generically, what should someone look for when trying to buy something like this that kinda walks the line between enterprise and consumer? Lastly -- is there anything that can be done with current "consumer" disks to make them more suitable for array use? IE can you use a SMART configuration to change the error recovery strategy used by the disk? Thanks!

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• Time machine disk icon on boot disk

  - by Ben Lings

  The icon for Macintosh HD (my boot disk) shows as a Time Machine disk. There is a file .com.apple.timemachine.supported in the root of the disk. If I delete the file and restart the computer, the icon goes back to a normal HD icon. However, the .com.apple.timemachine.supported file is recreated at some point on boot because when I log in again, the file has been recreated. If then reboot again, the icon goes back to being a Time Machine one. Any ideas about what is creating this file and why? More importantly - how can I get it to stop? It looks like something thinks the boot disk should be a Time Machine volume, but what? Console.app shows the following messages at approximately hourly intervals: 19/01/2010 19:23:54 /System/Library/CoreServices/backupd[7459] Starting standard backup 19/01/2010 19:23:54 /System/Library/CoreServices/backupd[7459] Cookie file is not readable or does not exist at path: /.<12 hex digits of MAC address for en0> 19/01/2010 19:23:54 /System/Library/CoreServices/backupd[7459] Volume at path / does not appear to be the correct backup volume for this computer. (Cookies do not match) 19/01/2010 19:23:59 /System/Library/CoreServices/backupd[7459] Backup failed with error: 18 Other possibly relevant information: The boot HD isn't the original - the original failed so this is a SuperDuper'd clone of the original drive. I used to use the same disk for a SuperDuper clone as for Time Machine. These are the same same symptoms as this and this.

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• Vagrant synced folders aren't case sensitive

  - by lvmisooners

  For our web stack, we are moving from a Windows Server to CentOS. To facilitate development, we're utilizing Vagrant to run CentOS VMs locally. We're using Vagrant's Synced Folders feature to allow devs to use their favorite IDEs on their host machine, but we're finding that one key feature is missing from this setup: file system case sensitivity. The synced folder inside the VM apparently takes on the properties of the host's file system, so if I'm developing from a Windows machine, or even OSX, the file system isn't case sensitive. This is a big issue, as our production servers will be pure CentOS, and its file system will be case sensitive. Case sensitivity is one of the main reasons we wanted to have a local VM. We want to prevent "It works on my machine!" Some workarounds we've considered or tried: Use lsyncd to sync from the vagrant share to a location within the VM that is case sensitive updating files on the host doesn't seem to generate the events in the VM that lsync listens to Make a case-sensitive partition on the host (Doesn't work for Windows) Use samba this may be an option, but we haven't vetted it yet. Is there a better way? Note that we have developers using Windows, OS X, and Ubuntu, and the solution needs to work everywhere.

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• Unexplained CPU and Disk activity spikes in SQL Server 2005

  - by Philip Goh

  Before I pose my question, please allow me to describe the situation. I have a database server, with a number of tables. Two of the biggest tables contain over 800k rows each. The majority of rows are less than 10k in size, though roughly 1 in 100 rows will be 1 MB but <4 MB. So out of the 1.6 million rows, about 16000 of them will be these large rows. The reason they are this big is because we're storing zip files binary blobs in the database, but I'm digressing. We have a service that runs constantly in the background, trimming 10 rows from each of these 2 tables. In the performance monitor graph above, these are the little bumps (red for CPU, green for disk queue). Once ever minute we get a large spike of CPU activity together with a jump in disk activity, indicated by the red arrow in the screenshot. I've run the SQL Server profiler, and there is nothing that jumps out as a candidate that would explain this spike. My suspicion is that this spike occurs when one of the large rows gets deleted. I've fed the results of the profiler into the tuning wizard, and I get no optimisation recommendations (i.e. I assume this means my database is indexed correctly for my current workload). I'm not overly worried as the server is coping fine in all circumstances, even under peak load. However, I would like to know if there is anything else I can do to find out what is causing this spike? Update: After investigating this some more, the CPU and disk usage spike was down to SQL server's automatic checkpoint. The database uses the simple recovery model, and this truncates the log file at each checkpoint. We can see this demonstrated in the following graph. As described on MSDN, the checkpoints will occur when the transaction log becomes 70% full and we are using the simple recovery model. This has been enlightening and I've definitely learned something!

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• Install GRUB bootloader without installing Linux.

  - by Kavitesh Singh

  I have Windows 7 installed on the system and I want to create a separate WinPe bootable partition which system can fallback when things go wrong. Now Win7 does give this option and i might also edit the BCD store to make changes in the boot menu of Win7 or could use EasyBCD. I dont want to use these options as i need to customize hiding/unhiding of partitions at the time of booting etc. I search and found GRUB might the tool i am looking for. I want to use GRUB loader without any version of Linux installed on the system. Can someone guide me how i can install the GRUB on harddisk MBR and configure the bootmenu. I search internet and mostly i came across commands which search the GRUB on the harddisk because of existing linux installation and then try to repair it. In my case there is no Linux at all. I have Ubuntu 9.10 bootable CD/ OpenSUSE 11.2 liveCD and installation disc. Can i use them to install GRUB on my system?

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• Ubuntu 10.04 preseed unattended install results in faulty partition table

  - by joschi

  I'm currently trying to set up an unattended installation of Ubuntu 10.04 (Lucid Lynx) through preseeding. But whenever I try to create a custom partition scheme, the Debian installer (which Ubuntu is using) produces a faulty partition table. I've taken the partition scheme described in the example preseed file: d-i partman-auto/expert_recipe string \ boot-root :: \ 40 50 100 ext3 \ $primary{ } $bootable{ } \ method{ format } format{ } \ use_filesystem{ } filesystem{ ext3 } \ mountpoint{ /boot } \ . \ 500 10000 1000000000 ext3 \ method{ format } format{ } \ use_filesystem{ } filesystem{ ext3 } \ mountpoint{ / } \ . \ 64 512 300% linux-swap \ method{ swap } format{ } \ . Unfortunately it also produces an incorrect partition table on the disk. The installation process itself is working and the installed system eventually boots and is working, as far as I can tell. But fdisk and cfdisk are still complaining: # fdisk -l /dev/sda Disk /dev/sda: 17.2 GB, 17179869184 bytes 255 heads, 63 sectors/track, 2088 cylinders Units = cylinders of 16065 * 512 = 8225280 bytes Sector size (logical/physical): 512 bytes / 512 bytes I/O size (minimum/optimal): 512 bytes / 512 bytes Disk identifier: 0x000a1cdd Device Boot Start End Blocks Id System /dev/sda1 * 1 5 37888 83 Linux Partition 1 does not end on cylinder boundary. /dev/sda2 5 2089 16736257 5 Extended /dev/sda5 5 2013 16121856 83 Linux /dev/sda6 2013 2089 613376 82 Linux swap / Solaris cfdisk even refuses to start at all: # cfdisk /dev/sda FATAL ERROR: Bad primary partition 1: Partition ends in the final partial cylinder parted on the other hand does not complain about the cylinder boundary of /dev/sda1: # parted /dev/sda p Model: VMware Virtual disk (scsi) Disk /dev/sda: 17.2GB Sector size (logical/physical): 512B/512B Partition Table: msdos Number Start End Size Type File system Flags 1 1049kB 39.8MB 38.8MB primary ext4 boot 2 40.9MB 17.2GB 17.1GB extended 5 40.9MB 16.5GB 16.5GB logical ext4 6 16.6GB 17.2GB 628MB logical linux-swap(v1) Since the installed system is working, it shouldn't be a big problem but I'm afraid that this will mean trouble in the future.

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• How to boot Linux from a 16gb USB flash drive

  - by Chris Harris

  I'm trying to install Linux on a single partition of a USB flash drive that's larger than 4gb. The first place I went to is http://pendrivelinux.com. I can follow these instructions for installing Xubuntu 9.04 perfectly, which unfortunately break down when I try to scale it up beyond 4gb. There are several other tools to do this (unetbootin and usb-creator) which follow a very similar formula. I figured out that a big problem of mine was that all of these tools assume the USB drive is formatted in FAT32, which unfortunately cannot hold a single file larger than 4gb. This is unfortunate because I want to use just one partition, so that my persistance file, casper-rw, looks like one big partition to the OS once I've booted off of the USB drive. I then tried following a myriad of instructions involving formatting the drive as one large ext2 filesystem and using extlinux to create a single bootable ext2 file system. This doesn't work for me however, after about 20 attempts verifying and slightly tweaking the formula, I cannot seem to get a "good" bootable ext2 file system built. I'm not entirely sure what's going on, but it seems as though no matter how hard I try, I cannot get the ext2 file system to remain coherent after copying the Linux ISO contents over, copying the MBR, and executing extlinux to create the ext bootloader. Every time, after I follow these steps (in any order) and reboot, I get an unbootable USB drive. If I then mount the drive under Linux again, I see a mess of a file system (inodes have clearly been screwed up somewhere along the way). I suspected that the USB drive wasn't being fully flushed, so I tried using the "sync" and "unmount" commands before rebooting which didn't affect things at all. I guess I have several possible questions - but let's start with the obvious - is there something I'm missing to create a bootable ext2 USB flash drive that's large (e.g. 16gb)?

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• MS SQL - Problem running SQL Server Agent Job via service account credentials

  - by molecule

  There are 5 steps in this job. First job is an SSIS Package store, second to fifth are file system jobs. We configured all jobs to use Windows Authentication. Under Run As, we specified a user account which was created under SecurityCredentials and SQL Server AgentProxiesSSIS Package execution. The job runs without any problems with this user account. We then proceeded to configure the job to use a service account instead. Service account was specified under SecurityCredentials and SQL Server AgentProxiesSSIS Package Execution. The job fails with this error. Executed as user: domain\serviceaccount. ....00 for 32-bit Copyright (C) Microsoft Corp 1984-2005. All rights reserved. Started: 3:37:57 PM Error: 2010-03-09 15:37:57.95 Code: 0xC0016016 Source: Description: Failed to decrypt protected XML node "DTS:Password" with error 0x8009000B "Key not valid for use in specified state.". You may not be authorized to access this information. This error occurs when there is a cryptographic error. Verify that the correct key is available. End Error Error: 2010-03-09 15:38:01.19 Code: 0xC0047062 Source: Get CONT_VIEW_LADDER in latest 45days OracleFMDatabase [1] Description: System.Data.OracleClient.OracleException: ORA-01005: null password given; logon denied at System.Data.OracleClient.OracleException.Check(OciErrorHandle errorHandle, Int32 rc) at System.Data.OracleClient.OracleInternalConnection.OpenOnLocalTransaction(String userName, String password, String serverName, Boo... The package execution fa... The step failed. Based on some research, I then go into MS Visual Studio and Open the project. I change the property of the package security from "EncryptSensitiveWithUserKey" to "DontSaveSensitive" but i still get the above error. I am new to this so any help will be very much appreciated. Thanks in advance

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• SAN performance issues storing SQL Server tempdb on a SAN that's being backed up

  - by user42724

  I'm afraid I don't know much about SAN's so please forgive my lack of detail or technical terms. As a developer I've just completed and put on an existing production system a new application but it would appear to have tipped the scales regarding the performance of the backups being taken from the SAN. As I understand it there's a mirror of the SAN being taken usually constantly at the block-level. However, there seem to be so many new writes to the disk that the SAN mirroring/backup process can no longer keep up. I believe I've narrowed this down to SQL Servers tempdb which exists on a drive that contributes the largest portion of the problem! In fact I think tempdb has be contributing the largest portion of the issues all along regardless of my application! My question therefore is whether the tempdb should ever be mirrored or backed on the SAN and whether anyone else has gone through this sort of pain already? I'm wondering whether it's a best practise to make sure that tempdb is never mirrored on a SAN simply because any writes to it don't need to be saved. This also raises a slightly connected question - is it better to rely on SQL Servers built-in database backups tools (DB in full-recovery mode with full/differential and transaction log backups) or, as is the case with our application, SQL server is in simple recovery mode and never backed up since the SAN is mirrored and backed up? Many thanks

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• CoreStore Encryption Error on Mac Lion

  - by Michael

  I am trying to encrypt an external drive using diskutil CoreStorage on Mac Lion 10.7.4. I thought the only requirements were that the drive have GUID partition scheme and Journaled HFS+ file system. I think my drive is configured accordingly but when I type the following command I get an error message back: Michaels-MacBook-Pro:~ Michael$ diskutil cs convert disk2 -passphrase TestPassword Error converting disk to CoreStorage: The given file system is not supported on Core Storage (-69756) Here are the details reported for the drive in question: Michaels-MacBook-Pro:~ Michael$ diskutil list disk2 /dev/disk2 #: TYPE NAME SIZE IDENTIFIER 0: GUID_partition_scheme *500.1 GB disk2 1: EFI 209.7 MB disk2s1 2: Apple_HFS Test1 499.8 GB disk2s2 Michaels-MacBook-Pro:~ Michael$ diskutil list disk2 /dev/disk2 #: TYPE NAME SIZE IDENTIFIER 0: GUID_partition_scheme *500.1 GB disk2 1: EFI 209.7 MB disk2s1 2: Apple_HFS Test1 499.8 GB disk2s2 Michaels-MacBook-Pro:~ Michael$ diskutil info disk2s2 Device Identifier: disk2s2 Device Node: /dev/disk2s2 Part of Whole: disk2 Device / Media Name: Test1 Volume Name: Test1 Escaped with Unicode: Test1 Mounted: Yes Mount Point: /Volumes/Test1 Escaped with Unicode: /Volumes/Test1 File System Personality: Journaled HFS+ Type (Bundle): hfs Name (User Visible): Mac OS Extended (Journaled) Journal: Journal size 40960 KB at offset 0xe8e000 Owners: Disabled Partition Type: Apple_HFS OS Can Be Installed: Yes Media Type: Generic Protocol: FireWire SMART Status: Not Supported Volume UUID: 1024D0B8-1C45-3057-B040-AE5C3841DABF Total Size: 499.8 GB (499763888128 Bytes) (exactly 976101344 512-Byte-Blocks) Volume Free Space: 499.3 GB (499315826688 Bytes) (exactly 975226224 512-Byte-Blocks) Device Block Size: 512 Bytes Read-Only Media: No Read-Only Volume: No Ejectable: Yes Whole: No Internal: No I'm a little concerned that the "Partition Type: Apple_HFS" entry is causing the problem, but I don't know how to change that. I only seem to be able to control the "File System Personality: Journaled HFS+" in Disk Utility. Can anyone shed some light on this for me?

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• problem booting crusty old windows XP

  - by Carson Myers

  I have an acer aspire laptop running Windows XP home. I believe I have some virus on it, I'm not sure--I mostly just run linux in a VM on it so I wasn't too worried. I'm not sure if that virus caused this problem. The laptop wasn't recognizing my USB hard drive for some reason so I decided to restart it. When it started up, it got past the memory test, past the boot screen, (but it paused right here on a blank screen for awhile) and flashed the desktop once (like it does just before the login screen) and then crashed. I got a quick BSOD and then it restarted. Then it tried to boot again, etc etc infinite loop of failure. Well, before trying safe mode, I disabled automatic restart on system crash so I could read the blue screen. There wasn't anything important on it, it said *** STOP: 0x00000000 (0xC0000000 0x,.... ) beginning physical memory dump physical memory dump complete That's not verbatim (obviously) but it didn't help me. so I booted in safe mode, and it stopped on the driver gagp30kx.sys and then restarted (and infinite loop of failure again). I burned a recovery CD and tried that. It loaded it, and I went into repair mode. I ran chkdsk and then disabled the AGP driver. Same thing on booting in safe mode except it stopped at mup.sys instead. I enabled the AGP driver again, and ran chkdsk again from the CD. It said it found problems but didn't say it fixed them. So I ran it a second time, and it said "performing additional checking or recovery" lots of times (I can't tell how many, they went above the screen top). I tried booting again and no luck. Every time I run chkdsk after trying to boot again it says it found and fixed more errors. I think it might be whatever driver is after the AGP driver, but I don't know what it is or how to find out. Can anyone help me fix this?

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• Can't boot flash drive on GIGABYTE motherboard

  - by Deltik

  Situation When I try to boot from my flash drive, my GIGABYTE 970A-UD3 motherboard returns this: Loading Operating System ... Boot error All other motherboards I've tried support booting from that flash drive (and a backup flash drive). The operating systems I tried on both flash drives were created with usb-creator-gtk (Ubuntu USB Startup Disk Creator). I know that the motherboard understands that there is an operating system on the flash drives because when I erase them, it complains in an ALL CAPS RAGE that there isn't an operating system, which is correct. How can I boot a flash drive that's bootable from other motherboards on this motherboard? Qualification This question is not a duplicate of this one because directly writing to the flash drive as an ISO 9660 (dd if=operating_system.iso of=/dev/sdb) still does not have the motherboard recognize the operating system. This question should be a duplicate of this one because I provide more information not provided by that poster. This forum thread has broken links and does not have a solution to my problem. Nobody knows what's going on in this forum thread.

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• Resize Debian in VirtualBox

  - by Poni

  I have a VM with one HD of size 3GB and I'd like to enlarge its HD to 7GB. So I execute this command on the host (while guest is shutdown): VBoxManage modifyhd debian.vdi --resize 7168 Then I run the guest, Debian 6, and then: smith@debian6:~$ df -h Filesystem Size Used Avail Use% Mounted on /dev/sda1 2.8G 2.6G 60M 98% / tmpfs 61M 0 61M 0% /lib/init/rw udev 57M 160K 57M 1% /dev tmpfs 61M 0 61M 0% /dev/shm smith@debian6:~$ sudo parted /dev/sda print Model: ATA VBOX HARDDISK (scsi) Disk /dev/sda: 3221MB Sector size (logical/physical): 512B/512B Partition Table: msdos Number Start End Size Type File system Flags 1 1049kB 3035MB 3034MB primary ext3 boot 2 3036MB 3220MB 185MB extended 5 3036MB 3220MB 185MB logical linux-swap(v1) smith@debian6:~$ cat /proc/partitions major minor #blocks name 8 0 3145728 sda 8 1 2962432 sda1 8 2 1 sda2 8 5 180224 sda5 So, no automatic resizing (detection) of the HD/partition (while VirtualBox, in the host, shows it's 7GB now). Ok... Then I do: smith@debian6:~$ sudo resize2fs /dev/sda1 resize2fs 1.41.12 (17-May-2010) The filesystem is already 740608 blocks long. Nothing to do! smith@debian6:~$ sudo parted GNU Parted 2.3 Using /dev/sda Welcome to GNU Parted! Type 'help' to view a list of commands. (parted) select /dev/sda1 Using /dev/sda1 (parted) resize WARNING: you are attempting to use parted to operate on (resize) a file system. parted's file system manipulation code is not as robust as what you'll find in dedicated, file-system-specific packages like e2fsprogs. We recommend you use parted only to manipulate partition tables, whenever possible. Support for performing most operations on most types of file systems will be removed in an upcoming release. Partition number? 1 Start? 0 End? [3034MB]? Here I'm stuck. At the above parted it asks me to resize to 3GB. No point in that, right.. What should I do in order to enlarge this partition?

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• Ensuring a repeatable directory ordering in linux

  - by Paul Biggar

  I run a hosted continuous integration company, and we run our customers' code on Linux. Each time we run the code, we run it in a separate virtual machine. A frequent problem that arises is that a customer's tests will sometimes fail because of the directory ordering of their code checked out on the VM. Let me go into more detail. On OSX, the HFS+ file system ensures that directories are always traversed in the same order. Programmers who use OSX assume that if it works on their machine, it must work everywhere. But it often doesn't work on Linux, because linux file systems do not offer ordering guarantees when traversing directories. As an example, consider there are 2 files, a.rb, b.rb. a.rb defines MyObject, and b.rb uses MyObject. If a.rb is loaded first, everything will work. If b.rb is loaded first, it will try to access an undefined variable MyObject, and fail. But worse than this, is that it doesn't always just fail. Because the file system ordering on Linux is not ordered, it will be a different order on different machines. This is worse because sometimes the tests pass, and sometimes they fail. This is the worst possible result. So my question is, is there a way to make file system ordering repeatable. Some flag to ext4 perhaps, that says it will always traverse directories in some order? Or maybe a different file system that has this guarantee?

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• How to bypass resume from hibernate

  - by Daniel Trebbien

  I am attempting to resume a Windows Vista laptop from hibernate, but the resume process seems to be stuck in an endless loop in which Windows is repeatedly trying to read from the optical drive. When I press the Power On button on the laptop, the screen is black (not even the backlight turns on) and the following occurs in a loop: Five seconds pass and I hear the optical drive being accessed. (There's no disk in the drive, so it sounds like a short buzzing noise.) Two seconds pass and I hear the optical drive being accessed. Two seconds pass and I hear the optical drive being accessed. So it's three short buzzing noises in a row, over and over again. Eventually I have to abruptly power off the machine. I have tried inserting a data CD into the drive as well as a bootable CD (a live Linux distro boot disk). For both, the optical drive spins up for a bit, but stops after Windows decides that the disk is not what it is looking for. I have since lost the Windows Vista recovery DVD, but I don't know if inserting the recovery disk into the optical drive would have a different effect than the bootable CD. I have tried pressing F8 immediately after pressing the Power On button (hoping to enter System Restore), but that did not have an effect. Is there a special key sequence that will cause Windows to bypass resuming from hibernate, effectively ignoring hiberfil.sys?

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• run as dialog always pops up

  - by user12006

  I recently got some malware on a machine that I don't use for much (partly intentional). I've cleaned it, but now everytime I open any .exe the 'Run As' dialog pops up asking me which user I want to use to run the program. What causes this, and what's the fix for it? edit My process to remove the malware was as such: Disconnected from the network Deleted DisableTaskMgr reg key Inspected with Process Explorer and Task Manager and noticed that all applications were being run within another executable located in Documents and Settings...\Temp\Some.exe The system tray application was also in Documents and Settings...\Temp\SomeOther.exe I suspected that a service was in place as the system tray application would restart if it was killed, but couldn't find any service that I didn't recognize. Removed permissions from Some.exe and SomeOther.exe (on those files only) Restarted and deleted Some.exe and SomeOther.exe Deleted startup entries that were created Ran AVG Free and Windows Defender to remove anything else (they would be killed immediately before the two .exe's were removed) Cleaned registry via CCleaner note that system restores would finish saying something to the effect of 'couldn't restore system: there were no changes made'. I attempted to restore to a week ago, and I only got the malware yesterday.

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• How does enterprise failover, such as with google.com, actually work?

  - by Alex Regan

  We have a few fedora systems that are configured for web, FTP, and email services. We'd like to mirror these services, so that we can provide near 100% reliability for our users. I'm a fairly experienced Linux administrator, but don't have much experience with redundant systems. What is the best way to do this? How does google and amazon do it? Google.com resolves to multiple IP addresses, but if my local desktop caches one of the IPs that are unreachable, I'm going to get a failed connection message. How do they prevent that from happening? If one of their servers goes down, how is it automatically redirected to another system, without the end-user ever knowing it? I understand there are failover devices, but they're only for failing over the system itself, not a complete network. Let's say we have the worst-case scenario, such as my primary system becomes inaccessible. What are the fundamental components that are used on Linux systems to provide this capability? I'm looking for concepts, or approaches, not answers like "check out openstack". What are the actual pieces that make up the solution? What has to be done to implement this capability? Hopefully my question is clear. I'd like to know what the pieces are that make up a failover system and what approach is taken by successful organizations that implement it. Thanks again, Alex

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• Compaq R4000 laptop randomly locking up

  - by Josh

  I have a Compaq R4000 laptop with 2GB of RAM, running Ubuntu Linux 9.10. It is randomly locking up on me, approximately once every two days. I have a second partition with Windows XP Home installed, and I have had the system lock up in XP as well, meaning I believe this is a hardware issue. I have run two passes of Memtest86+ with no errors. The system has a fan that has died, so I initially suspected overheating. However the system just locked up on me while I was in the middle of typing a script to warn me / shut down if the temperature was too high. When the lockup happened the temperature was 88°F, so I am now starting to believe that may not be the issue. When the system locks up, I cannot SSH in nor ping it. Nothing shows in syslog when I reboot. I have configured it to send syslog messages to a local server as well and no messages appear on that server when the lockup happens. I am open to any and all advice!

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• How to fix locale settings in Debian squeeze

  - by blogjunkie

  I occasionally get locale errors and I've tried to run dpkg-reconfigure locales to fix the problem. Here's the output: :~$ sudo dpkg-reconfigure locales perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_CTYPE = "UTF-8", LANG = "en_US.UTF-8" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). locale: Cannot set LC_CTYPE to default locale: No such file or directory locale: Cannot set LC_ALL to default locale: No such file or directory /usr/bin/locale: Cannot set LC_CTYPE to default locale: No such file or directory /usr/bin/locale: Cannot set LC_ALL to default locale: No such file or directory Generating locales (this might take a while)... en_US.UTF-8... done Generation complete. perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_CTYPE = "UTF-8", LANG = "C" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). perl: warning: Setting locale failed. perl: warning: Please check that your locale settings: LANGUAGE = (unset), LC_ALL = (unset), LC_CTYPE = "UTF-8", LANG = "C" are supported and installed on your system. perl: warning: Falling back to the standard locale ("C"). I looked for /usr/bin/locale but it doesn't exist on my system. Do I need to create it? What do I put in there? Also I found a related question that says the cause of his problem was in the sshd_config file. The file had the following entry: AcceptEnv LANG LC_* I'm mainly concerned that it may cause problems for my VPS, otherwise if it's nothing major I'll be happy to ignore the problem. What should I do? thanks!

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• Reinserted a RAID disk. Defined as foreign. Is import or clear the correct choice?

  - by Petrus

  I have re-inserted a RAID disk, on a DELL server with Windows Server 2008. The drive-status indicator was changing between a green and amber light, and the monitor gave the following message: There are offline or missing virtual drives with preserved cache. Please check the cables and ensure that all drives are present. Press any key to enter the configuration utility. I pressed a key and the PERC 6/I Integrated BIOS Configuration Utility showed that the RAID Status for that disk was Offline. After reinsertion of the disk the monitor is giving the following message: Foreign configuration(s) found on adapter. Press any key to continue or ‘C’ load the configuration utility, or press ‘F’ to import foreign configuration(s) and continue. After checking around on the net I am uncertain if I should choose import or clear. I cannot find out if an import means importing information from the array/system to the now foreign disk or the other way, i.e. importing information from the foreign disk to the array/system that was actually working fine. Also; if clear is a necessary thing to do ahead of a rebuild of that disk, or if clear means to clear the system to somehow make it ready to import the information from the foreign disk to the array/system, which is not what I want. I imagine that making the wrong choice here might be fatal. Please help clearing this out by telling what to choose and why.

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• "postgres blocked for more than 120 seconds" - is my db still consistent?

  - by nn4l

  I am using an iscsi volume on an Open-E storage system for several virtual machines running on a XenServer host. Occasionally, when there is a very high disk I/O load on the virtual machines (and therefore also on the storage system), I got this error message on the vm consoles: [2594520.161701] INFO: task kjournald:117 blocked for more than 120 seconds. [2594520.161787] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [2594520.162194] INFO: task flush-202:0:229 blocked for more than 120 seconds. [2594520.162274] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. [2594520.162801] INFO: task postgres:1567 blocked for more than 120 seconds. [2594520.162882] "echo 0 > /proc/sys/kernel/hung_task_timeout_secs" disables this message. I understand this error message is caused by the kernel to inform that these processes haven't been run for 120 seconds, most likely because a disk access to the storage system has not yet been processed. But what is the effect on the processes. For example, will the postgres process eventually write its data when the storage system is idle again after a few minutes, so that all data is still consistent? Or will it abort the write, leaving some tables in an inconsistent state? I certainly expect that the former should be the case - if the disk access is slow, postgres (or any other affected process) should just wait as long as it takes. I can live with the application hanging for a few minutes. But if there is a chance for data corruption then any of these errors is really bad news. Please advise what to do here.

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