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  • How (and where) to get aligned tRNA sequences (and import it into R)

    - by Tal Galili
    (This is a database / R commands question) I wish (for my thesis work), to import tRNA data into R and have it aligned. My questions are: 1) What resources can I use for the data. 2) What commands might help me with the import/alignment. So far, I found two nice repositories that holds such data: http://trnadb.bioinf.uni-leipzig.de/Resulthttp://trnadb.bioinf.uni-leipzig.de/Result http://gtrnadb.ucsc.edu/download.htmlhttp://gtrnadb.ucsc.edu/download.html And also the readFASTA command from Biostrings, that does basic importing of the data into R. My problem still remains with how to handle the alignment of the tRNA. Since I am not from the field, I might be missing a very basic answer (like where I should download the data from, or what command to use). If you might be willing to advice me, that would be most helpful. Many thanks in advance, Tal

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  • Why does appending "" to a String save memory?

    - by hsmit
    I used a variable with a lot of data in it, say String data. I wanted to use a small part of this string in the following way: this.smallpart = data.substring(12,18); After some hours of debugging (with a memory visualizer) I found out that the objects field smallpart remembered all the data from data, although it only contained the substring. When I changed the code into: this.smallpart = data.substring(12,18)+""; ..the problem was solved! Now my application uses very little memory now! How is that possible? Can anyone explain this? I think this.smallpart kept referencing towards data, but why? UPDATE: How can I clear the big String then? Will data = new String(data.substring(0,100)) do the thing?

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  • How do I size a UITextView to it's content?

    - by drewh
    Is there a good way to adjust the size of a UITextView to conform to it's content? Say for instance I have a UITextView that contains one line of text: "Hello world" I then add another line of text: "Goodbye world" Is there a good way in Cocoa Touch to get the rect that will hold all of the lines in the text view so that I can adjust the parent view accordingly? As another example, look at the Notes field for events in the Calendar application--note how the cell (and the UITextView it contains) expands to hold all lines of text in the notes string.

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  • Sunspot / Solr full text search - how to index Rails associations

    - by Sam
    Is it possible to index through an association with Sunspot? For example, if a Customer has_many Contacts, I want a 'searchable' block on my Customer model that indexes the Contact#first_name and Contact#last_name columns for use in searches on Customer. acts_as_solr has an :include option for this. I've simply been combining the associated column names into a text field on Customer like shown below, but this doesn't seem very flexible. searchable do text :organization_name, :default_boost => 2 text :billing_address1, :default_boost => 2 text :contact_names do contacts.map { |contact| contact.to_s } end Any suggestions?

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  • Can MySQL Nested Select return list of results

    - by John
    Hi I want to write a mysql statement which will return a list of results from one table along with a comma separated list of field from another table. I think an example might better explain it Table 1 ======================== id First_Name Surname ---------------------- 1 Joe Bloggs 2 Mike Smith 3 Jane Doe Table 2 ======================== id Person_Id Job_id --------------------- 1 1 1 2 1 2 3 2 2 4 3 3 5 3 4 I want to return a list of people with a comma separated list of job_ids. So my result set would be id First_Name Surname job_id ------------------------------ 1 Joe Bloggs 1,2 2 Mike Smith 2 3 Jane Doe 3,4 I guess the sql would be something like select id, First_Name, Surname, (SELECT job_id FROM Table 2) as job_id from Table 1 but obviously this does not work so need to change the '(SELECT job_id FROM Table 2) as job_id' part. Hope this makes sense Thanks John

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  • NSNumberFormatter weirdness with NSNumberFormatterPercentStyle

    - by rein
    Hi, I need to parse some text in a UITextField and turn it into a percentage. Ideally, I'd like the user to either type something like 12 or 12% into the text field and have that be parsed into a number as a percentage. Here's what's weird. The number formatter seems to not like 12 and seems to divide 12% by 10000 instead of 100: NSNumberFormatter *formatter = [[[NSNumberFormatter alloc] init] autorelease]; [formatter setNumberStyle:NSNumberFormatterPercentStyle]; NSNumber *n1 = [formatter numberFromString:@"12"]; NSNumber *n2 = [formatter numberFromString:@"12%"]; NSLog(@"n1 = %@", n1); // n1 = (null) NSLog(@"n2 = %@", n2); // n2 = 0.0012 How do I get the formatter to return 0.12 as expected? EDIT: it seems to only happen if the formatter fails first. If the formatter does not fail it returns 0.12 as expected. Strange.

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  • Using Python and Mechanize with ASP Forms

    - by tchaymore
    I'm trying to submit a form on an .asp page but Mechanize does not recognize the name of the control. The form code is: <form id="form1" name="frmSearchQuick" method="post"> .... <input type="button" name="btSearchTop" value="SEARCH" class="buttonctl" onClick="uf_Browse('dledir_search_quick.asp');" > My code is as follows: br = mechanize.Browser() br.open(BASE_URL) br.select_form(name='frmSearchQuick') resp = br.click(name='btSearchTop') I've also tried the last line as: resp = br.submit(name='btSearchTop') The error I get is: raise ControlNotFoundError("no control matching "+description) ControlNotFoundError: no control matching name 'btSearchTop', kind 'clickable' If I print br I get this: IgnoreControl(btSearchTop=) But I don't see that anywhere in the HTML. Any advice on how to submit this form?

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  • Finding and changing currencies using Greasemonkey

    - by Noam Smadja
    It doesnt find nor replaces the strings.. may be wrong regex? // ==UserScript== // @name CurConvertor // @namespace CurConvertor // @description noam smadja // @include http://www.zavvi.com/* // ==/UserScript== textNodes = document.evaluate( "//text()", document, null, XPathResult.UNORDERED_NODE_SNAPSHOT_TYPE, null); var searchRE = new RegExp('\d\d.\d\d','gi'); var replace = searchRE*5.67; for (var i=0;i<textNodes.snapshotLength;i++) { var node = textNodes.snapshotItem(i); node.data = node.data.replace(searchRE, replace); i wrote this, but its not doing a think. even when i change the string in the regex to a string in the webpage it still does nothing.. what am i missing? :)

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  • Visual Studio 2008 built-in web server raises integrated pipeline error on Http Header manipulation

    - by jdk
    Using Visual Studio 2008, built-in web server. In a Web Handler .ashx file public void ProcessRequest(HttpContext context) { context.Response.ContentType = MimeType_text_xvcard; context.Response.Headers.Add(HttpHeader_ContentLength, "2138"); when I try to added a header I get the exception This operation requires IIS integrated pipeline mode. Description: An unhandled exception occurred during the execution of the current web request. Please review the stack trace for more information about the error and where it originated in the code. Exception Details: System.PlatformNotSupportedException: This operation requires IIS integrated pipeline mode. I can find information about this on the Internet but need specific info about how to work with Integrated Pipeline mode (presumably through web.config?) to allow HTTP headers to be manipulated. Note: I am using the Visual Studio built-in web server instead of full-fledged IIS

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  • CSS problems with our eBay custom HTML template

    - by user1302015
    we are building a template for our eBay listings. eBay allows users to upload a description as HTML code and allows that code to link your external CSS files. eBay displays the user's HTML code in an iframe, it looks like eBay calculates the height of your page on load and then and resizes the iframe according to that height. Here is a link to one of our test listings in eBay's sandbox environment: http://cgi.sandbox.ebay.com/ws/eBayISAPI.dll?ViewItem&item=110097353751&ssPageName=ADME:L:LCA:US:1123#ht_692wt_1136 In Chrome / Firefox there's a second scroll bar next to the listing. In IE, the listings just covers eBay's footer which is even worse I solved this issue once using CSS and i can't remember how. I would really appreciate any help. Here is our CSS code: http://pastebin.com/aj4bffG9

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  • Install Bash completion together with distutils / pip

    - by ifischer
    I have created a simple Python module and want to distribute it with pip. I also want to install a Bash completion file together with the module. I'm installing the module with Python 2.7.1+ and pip 0.8.2. I have this setup.py: setup( name='jenkinsmon', version='0.0.1', description='Jenkins Job Monitor', long_description=open('README.txt').read(), scripts=['bin/jenkinsmon'], data_files=[ ('/etc/bash_completion.d', ['extras/jenkinsmon.completion']), ], install_requires = [ 'autojenkins', 'argparse' ], ) Now if I try to install the package with pip install -e ., the Bash completion file never gets installed together with the package. I also tried workarounds by specifying a MANIFEST.in, like described here: MANIFEST.in: include extras/jenkinsmon.completion But this also doesn't help - the completion files won't get installed. What can I do to install the Bash completion files?

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  • An event for when xVal validation fails?

    - by Dusda
    I have a registration form leveraging xVal to handle all validation on the form. It works really well, with one exception: the user doesn't get feedback because another element on the page (a tip telling the user that their username will be their email address) draws on top of the span element xVal spits out when it notices a problem. If I had a way to detect when xVal has a problem with the email field, I could just toggle the visibility of that tooltip and be on my way, but I'm not sure how to do so. I know that xVal uses jquery.validate.js under the hood; is there an event or something I could tie into to do this?

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  • Dynamically Added CheckBox Column is Disabled in GridView

    - by Mark Maslar
    I'm dynamically adding a Boolean column to a DataSet. The DataSet's table is the DataSource for a GridView, which AutoGenerates the columns. Issue: The checkboxes for this dynamically generated column are all disabled. How can I enable them? ds.Tables["Transactions"].Columns.Add("Retry", typeof(System.Boolean)); ds.Tables["Transactions"].Columns["Retry"].ReadOnly = false; In other words, how can I control how GridView generates the CheckBoxes for a Boolean field? (And why does setting ReadOnly to False have no effect?) Thanks!

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  • html select option tag closes itself due to a "/" character in the dynamic value (JSP, JSTL)

    - by saky
    <select id="ordersSelect" class="drop-down" onchange="somemethod()"> <c:forEach items="${orders}" var="order" varStatus="orderStatus"> <option value="${order.id}"> ${order.publicId} </option> </c:forEach> </select> I have the above peice of code in a JSP page, that receives a list of Orders and each order has some information, the particular information that I want to display in a SELECT field is the publicId. The problem is that, on display there is only one OPTION in the SELECT and the rest of the order's publicId s are displayed as normal text below the SELECT box and not an OPTION to select. I found out that the publicId actually contains a String like A10/0001/0 and that is the character "/" is most probably causing the problem. Any solutions/suggestion/ideas?

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  • mySQL experts - need help with 'intersect'

    - by MTCreations
    I know that mySQL 5.x does not support INTERSECT, but that seems to be what I need. Table A: Products (p_id) Table B: Prod_cats (cat_id) - category info (name, description, etc) Table C: prod_2cats (p_id, cat_id) - many to many prod_2cats holds the many (1 or more) categories that have been assigned to Products (A). Doing a query/filter lookup, (user interactive) and need to be able to select across multiple categories the products that meet ALL the criteria. Ex: - 80 products assigned to Category X - 50 products assigned to Category Y - but only 10 products (intersect) are assigned to BOTH cat X AND cat Y This sql works for one category: SELECT * FROM products WHERE p_show='Y' AND p_id IN ( SELECT p_id FROM prods_2cats AS PC WHERE PC.cat_id =" . $cat_id ." <-$cat_id is sanitized var passed from query form . I can't seem to find the means to say ' give me the intersect of cat A and cat B' and get back the subset (10 records, from my example) Help!

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  • ModelState.AddModelError encodes HTML

    - by NTulip
    Hi I am noticing a weird issue when using ModelState.AddModelError to validate input on my forms. The output from Html.ValidationMessage is not the true HTML value but it's encoded value and so the CSS style is not applied to the error message. Example: private string errorMessage = "<span class=\"negative\">{0}</span><br class=\"hid\" />"; ModelState.AddModelError("title", String.Format(errorMessage, "Tab title is required")); The output is shown as: <span class="field-validation-error">&lt;span class=&quot;negative&quot;&gt;URL is Required&lt;/span&gt;&lt;br class=&quot;hid&quot; /&gt;</span> This didn't use to be the case with their earlier beta's and I am not sure what approach to take here. Thanks Nick

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  • Using custom request and custom redirect with Contact Form 7

    - by Scott B
    I have several sites that I want to link back to the main site which hosts the contact form (using contact form 7). I would like to capture the request parameter "site-url" on incoming links to the contact form. Then when the user submits the form, I would like to redirect them back to the site specified in the site-url. Any ideas if this is possible with contact form 7? I would also like to add a special field in the contact form which would insert the site-url into the email that i get so that I know which site they were referred from.

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  • DataAnnotation error message

    - by user281180
    I have the following code; [RegularExpression(@"^[\w-\.]+@([\w-]+\.)+[\w-]{2,4}$", ErrorMessage = "Invalid Email Address")] public string Email { get; set; } In my view I have: <tr><td>Email</td><td><%=Html.TextBox("Email", Html.Encode(Model.Email), new { Class = "edit_control" })%></td><td><%= Html.ValidationMessageFor(model => model.Email)%></td></tr> My problem is when I insert an invalid email, it still saves. If I let other required fields empty then the message is displayed. Else, if this is the only field with an error, the message doesn`t get displayed. I want it to display the message and not save the form values.

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  • Decode html tag so that it can be read when it goes back to the server more specifically the controller

    - by Yusuf
    My engine is Aspx. How can I decode/encode the html tags that is in my text box. I have the html tag to make it more readable. I tried the ValidationRequest and the htmlDecode(freqQuestion.Answer) but no luck. I just keep getting the same message. Server Error in '/Administrator' Application. A potentially dangerous Request.Form value was detected from the client (QuestionAnswer="...ics Phone:123-456-7890 Description: Request Validation has detected a potentially dangerous client input value, and processing of the request has been aborted. This value may indicate an attempt to compromise the security of your application, such as a cross-site scripting attack. To allow pages to override application request validation settings, set the requestValidationMode attribute in the httpRuntime configuration section to requestValidationMode="2.0". Example: . After setting this value, you can then disable request validation by setting validateRequest="false" in the Page directive or in the configuration section. However, it is strongly recommended that your application explicitly check all inputs in this case. For more information, see http://go.microsoft.com/fwlink/?LinkId=153133. View Page <%@ Page Title="" Language="C#" MasterPageFile="~/Views/Shared/Site.Master" validateRequest="false" Inherits="System.Web.Mvc.ViewPage<dynamic>" %> <asp:Content ID="Content1" ContentPlaceHolderID="TitleContent" runat="server"> EditFreqQuestionsUser </asp:Content> <asp:Content ID="Content2" ContentPlaceHolderID="MainContent" runat="server"> <script type="text/javascript"> $(document).ready(function () { $("#freqQuestionsUserUpdateButton").click(function () { $("#updateFreqQuestionsUser").submit(); }); }); </script> <h2>Edit Freq Questions User </h2> <%Administrator.DarkstarAdminProductionServices.FreqQuestionsUser freqQuestionsUser = ViewBag.freqQuestionsUser != null ? ViewBag.freqQuestionsUser : new Administrator.DarkstarAdminProductionServices.FreqQuestionsUser(); %> <%List<string> UserRoleList = Session["UserRoles"] != null ? (List<string>)Session["UserRoles"] : new List<string>(); %> <form id="updateFreqQuestionsUser" action="<%=Url.Action("SaveFreqQuestionsUser","Prod")%>" method="post"> <table> <tr> <td colspan="3" class="tableHeader">Freq Questions User Details <input type ="hidden" value="<%=freqQuestionsUser.freqQuestionsUserId%>" name="freqQuestionsUserId"/> </td> </tr> <tr> <td colspan="2" class="label">Question Description:</td> <td class="content"> <input type="text" maxlength="2000" name="QuestionDescription" value="<%=freqQuestionsUser.questionDescription%>" /> </td> </tr> <tr> <td colspan="2" class="label">QuestionAnswer:</td> <td class="content"> <input type="text" maxlength="2000" name="QuestionAnswer" value="<%=Server.HtmlDecode(freqQuestionsUser.questionAnswer)%>" /> </td> </tr> <tr> <td colspan="3" class="tableFooter"> <br /> <a id="freqQuestionsUserUpdateButton" href="#" class="regularButton">Save</a> <a href="javascript:history.back()" class="regularButton">Cancel</a> </td> </tr> </table> </form> </asp:Content> Controller [AuthorizeAttribute(AdminRoles = "EditFreqQuestionsUser")] public ActionResult SaveFreqQuestionsUser(string QuestionDescription, string QuestionAnswer) { Guid freqQuestionsUserId = Request.Form["freqQuestionsUserId"] != null ? new Guid(Request.Form["freqQuestionsUserId"]) : Guid.Empty; //load agreement eula ref AdminProductionServices.FreqQuestionsUser freqqQuestionsUser = Administrator.Models.AdminProduction.FreqQuestionsUser.LoadFreqQuestionsUser(freqQuestionsUserId, string.Empty, string.Empty)[0]; freqqQuestionsUser.questionDescription = QuestionDescription; freqqQuestionsUser.questionAnswer = QuestionAnswer; //save it Administrator.Models.AdminProduction.FreqQuestionsUser.addFreqQuestionsUser(freqqQuestionsUser); return RedirectToAction("SearchFreqQuestionsUser", "Prod", new { FreqQuestionsUserId = freqQuestionsUserId }); }

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  • Display Image in Crystal reports Using URL

    - by Shantanu Gupta
    I want to show image in a crystal report. Scenario is something like this. I have a database where my path of an image is persisting. eg ftp://Images/1.jpg Now i want to repeat this image in a crystal report. When i fills my datatable it shows me complete url. When i displays this field in GridView i uses imageBox to display my image and it works for me very fine. But when i tries to do the same with crystal reports, it starts me showing image path as it is. Now here instead of path i want an image to be displayed.

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  • How to get Wordpress MU / BuddyPress wp_signup meta data

    - by Ryan
    I am trying to get a value from the meta data that is stored in the wp_signups table for a Wordpress MU / BuddyPress installation. I see it's stored in the meta field as s:3:"age";s:2:"25"; ...which is age = 25 I put the information there using $usermeta['age'] = $_POST['signup_age']; in a plugin subscribing the the bp_signup_usermeta filter. I need to get it back during a function subscribing to bp_before_activate_content. How can I do this? Whats the function call? (searched documentation to no avail)

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  • Writing a rails validator with integer

    - by user297008
    I was trying to write a validation for Rails to ensure that a price entered on a form was greater than zero. It works…sort of. The problem is that when I run it, val is turned into an integer, so it thinks that .99 is less than .1. What's going on, and how should I fix the code? class Product < ActiveRecord::Base protected def self.validates_greater_than_zero(*attr_names) validates_each(attr_names) do |record, attr, val| record.errors.add(attr, "should be at least 0.01 (current val = #{val.to_f})") if val.nil? || val < 0.01 end end public validates_presence_of :title, :description, :image_url validates_numericality_of :price validates_greater_than_zero :price end

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  • Parse Complex WSDL Parameter Information in C#

    - by jaws
    I am attempting to parse WSDL, along the lines of the example given here. The author notes, in the comments, that the example is not capable of drilling down into complex data types. And in fact, when I run the example, it does not appear to even handle simple data types. I have poked around in System.Web.Services.Description.ServiceDescription class, which is used in the example, but cannot find any actual parameter or return type information at run-time. I gather that I may need to do some manual parsing of an xsd file? Both google and stackoverflow appear to lack a complete example of how to drill down into complex types programmatically, so... how should I do this?

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  • How to create a vector of lists in R?

    - by Martin
    Hi, I have a list (tmpList), which looks like this: $op [1] "empty" $termset $termset$field [1] "entry" $termset[[2]] $termset[[2]]$explode [1] "Y" This is a list with a list inside. If I add this list to a vector theOneVector = c(theOneVector, tmpList) Now the resulting vector is of the length 2, because the first entry ("op") of the list is separated from the tmpList. Is it possible to append the complete tmpList into this vector? I already tried it with theOneVector = c(theOneVector, list(tmpList)) which gives a vector with the length of 1, but it is very cumbersome to access the elements of the list with this extra list around the list. (Too much list in one sentence I think.) Any help would be appreciated, Martin

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