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  • how does ` cat << EOF` work in bash?

    - by hasen j
    I needed to write a script to enter multi-line input to a program (psql) After a big of googling, I found the following syntax works: cat << EOF | psql ---params BEGIN; `pg_dump ----something` update table .... statement ...; END; EOF This correctly concatenates all these strings and passes the result as an input to psql. but I have no idea how/why it works, can some one please explain? I'm referring mainly to cat << EOF, I know > outputs to a file, >> appends to a file, < reads input from file. What does << exactly do? And is there a man page for it?

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  • problem in allocating kernal memory by malloc(),

    - by basu sagar
    Is there any protection provided by kernel? Because when we tried to allocate memory using an malloc(), the kernel allowed to allocated around 124 MB of memory, and when we try to write into it, the kernel crashed. If there was protection of kernel memory area, this wouldn't have happened, i guess

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  • php cli script hangs with no messages

    - by julio
    Hi-- I've written a PHP script that runs via SSH and nohup, meant to process records from a database and do stuff with them (eg. process some images, update some rows). It works fine with small loads, up to maybe 10k records. I have some larger datasets that process around 40k records (not a lot, I realize, but it adds up to a lot of work when each record requires the download and processing of up to 50 images). The larger datasets can take days to process. Sometimes I'll see in my debug logs memory errors, which are clear enough-- but sometimes the script just appears to "die" or go zombie on me. My tail of the debug log just stops, with no error messages, the tail of the nohup log ends with no error, and the process is still showing in a ps list, looking like this-- 26075 pts/0 S 745:01 /usr/bin/php ./import.php but no work is getting done. Can anyone give me some ideas on why a process would just quit? The obvious things (like a php script timeout and memory issues) are not a factor, as far as I can tell. Thanks for any tips PS-- this is hosted on a godaddy VDS (not my choice). I am sort of suspecting that godaddy has some kind of limits that might kick in on me despite what overrides I put in the code (such as set_time_limit(0);).

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  • What's the output object file format of GNU assembler as?

    - by smwikipedia
    I have checked the assembler options of GNU assembler as and I didn't find an option to specify the output object file format. If I am using the following command as -o foobar.o foobar.s What object file format will I get? The as manual says that "The GNU as can be configured to produce several alternative object file formats." But how? How can I change it to a ELF format? Many thanks.

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  • Convert Chunk of Data into Tabular Format Using Perl

    - by neversaint
    I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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  • How to detect segmentation fault details using Valgrind?

    - by Davit Siradeghyan
    Hi all I have a std::map< std::string, std::string which initialized with some API call. When I'm trying to use this map I'm getting segmentation fault. How can I detect invalid code or what is invalid or any detail which can help me to fix problem? Code looks like this: std::map< std::string, std::string> cont; some_func( cont ); // getting parameter by reference and initialize it std::cout << cont[ "some_key" ] << '\n'; // getting segmentation fault here

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  • How te execute with /bin/false shell

    - by Amar
    Hello I am trying to setup per-user fastcgi scripts that will run each on different port and with different user. Here is example of my script: #!/bin/bash BIND=127.0.0.1:9001 USER=user PHP_FCGI_CHILDREN=2 PHP_FCGI_MAX_REQUESTS=10000 etc... However, if I add user with /bin/false (which I want, since this is about to be something like shared hosting and I dont want users to have shell access), the script is run'd under 1001, 1002 'user' which, as I googled, might be security hole. My question is: Is it possible to allow user(s) execute shell scripts but disable them to log in via SSH ? Thank you

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  • Sed does not work in expect

    - by Sharjeel Sayed
    I made this bash one-liner which I use to list Weblogic instances running along with their full paths.This works well when I run it from the shell. /usr/ucb/ps auwwx | grep weblogic | tr ' ' '\n' | grep security.policy | grep domain | awk -F'=' '{print $2}' | sed 's/weblogic.policy//' | sed 's/security\///' | sort I tried to incorporate this in an expect script send "echo Weblogic Processes: ; /usr/ucb/ps auwwx | grep weblogic | tr ' ' '\n' | grep security.policy | grep domain | awk -F'=' '{print \$2}' | sed 's/weblogic.policy//' | sed 's/security\///' | sort ; echo ; echo\r" but I got this error sed: -e expression #1, char 13: unknown option to `s' Please help

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  • kernelHow to read/write files within kernel module?

    - by Methos
    I know all the discussions about why one should not read/write files from kernel, instead how to use /proc or netlink to do that. I want to read/write anyway. I have also read http://www.linuxjournal.com/article/8110 However, problem is 2.6.30 does not export sys_read(). Rather its wrapped in SYSCALL_DEFINE3. So if I use that in my module, I get following warnings: WARNING: "sys_read" [xxx.ko] undefined! WARNING: "sys_open" [xxx.ko] undefined! Obviously insmod cannot load the module because linking does not happen correctly. Questions: How to read/write within kernel after 2.6.22 (where sys_read()/sys_open() are not exported)? In general, how to use system calls wrapped in macro SYSCALL_DEFINEn() from within the kernel?

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  • error in implementing static files in django

    - by POOJA GUPTA
    my settings.py file:- STATIC_ROOT = '/home/pooja/Desktop/static/' # URL prefix for static files. STATIC_URL = '/static/' # Additional locations of static files STATICFILES_DIRS = ( '/home/pooja/Desktop/mysite/search/static', ) my urls.py file:- from django.conf.urls import patterns, include, url from django.contrib.staticfiles.urls import staticfiles_urlpatterns from django.contrib import admin admin.autodiscover() urlpatterns = patterns('', url(r'^search/$','search.views.front_page'), url(r'^admin/', include(admin.site.urls)), ) urlpatterns += staticfiles_urlpatterns() I have created an app using django which seraches the keywords in 10 xml documents and then return their frequency count displayed as graphical representation and list of filenames and their respective counts.Now the list has filenames hyperlinked, I want to display them on the django server when user clicks them , for that I have used static files provision in django. Hyperlinking has been done in this manner: <ul> {% for l in list1 %} <li><a href="{{STATIC_URL}}static/{{l.file_name}}">{{l.file_name}}</a{{l.frequency_count</li> {% endfor %} </ul> Now when I run my app on the server, everything is running fine but as soon as I click on the filename, it gives me this error : Using the URLconf defined in mysite.urls, Django tried these URL patterns, in this order: ^search/$ ^admin/ ^static\/(?P<path>.*)$ The current URL, search/static/books.xml, didn't match any of these. I don't know why this error is coming, because I have followed the steps required to achieve this. I have posted my urls.py file and it is showing error in that only. I'm new to django , so Please help

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  • Opening SSL URLs with Python

    - by RadiantHex
    Hi folks, I'm using mechanize to navigate pages, it works pretty well. Unfortunately I have a random error come up, by random I mean it occasionally appears. URLError at /test/ urlopen error [Errno 1] _ssl.c:1325: error:140943FC:SSL routines:SSL3_READ_BYTES:sslv3 alert bad record mac I really need help on this one :) any ideas?

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  • Killing HTML nodes from shell

    - by hendry
    Need a solution to kill nodes like <footer>foobar</footer> and <div class="nav"></div> from many several HTML files. I want to dump a site to disk without the menus and footers and what not. Ideally I would accomplish this task using basic unix tools like sed. Since it's not XML I can't use xmlstarlet. Could anyone please suggest recipes, so I can ideally have a script running kill-node.sh 'div class="toplinks"' *.html to prune the bits I don't want. Thank you,

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  • forkpty - socket

    - by Alexxx
    Hi, I'm trying to develop a simple "telnet/server" daemon which have to run a program on a new socket connection. This part working fine. But I have to associate my new process to a pty, because this process have some terminal capabilities (like a readline). The code I've developped is (where socketfd is the new socket file descriptor for the new input connection) : int masterfd, pid; const char *prgName = "..."; char *arguments[10] = ....; if ((pid = forkpty(&masterfd, NULL, NULL, NULL)) < 0) perror("FORK"); else if (pid) return pid; else { close(STDOUT_FILENO); dup2(socketfd, STDOUT_FILENO); close(STDIN_FILENO); dup2(socketfd, STDIN_FILENO); close(STDERR_FILENO); dup2(socketfd, STDERR_FILENO); if (execvp(prgName, arguments) < 0) { perror("execvp"); exit(2); } } With that code, the stdin / stdout / stderr file descriptor of my "prgName" are associated to the socket (when looking with ls -la /proc/PID/fd), and so, the terminal capabilities of this process doesn't work. A test with a connection via ssh/sshd on the remote device, and executing "localy" (under the ssh connection) prgName, show that the stdin/stdout/stderr fd of this process "prgName" are associated to a pty (and so the terminal capabilities of this process are working fine). What I am doing wrong? How to associate my socketfd with the pty (created by forkpty) ? Thank Alex

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  • C++ Linker Error SDL Image - could not read symbols

    - by Matt H
    Hi, I'm trying to use the SDL_Image library and I've added the .so to the link libraries list for my project (I'm using Code::Blocks, by the way). After doing this, when I go to compile, I get this error: Linking console executable: bin/Debug/ttfx /usr/lib32/libSDL_image-1.2.so: could not read symbols: File in wrong format What does this mean and how can I get it working? Thanks!

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  • Unix RPC programming

    - by Abhi
    Heyy all, I needed some help with ONC RPC programming. My task is to create two-tier client-server architecture wherein one main server (something like a directory) keeps a track of level-two servers and acts as a lookup; the level-two servers exposing some trivial functions, and finally, the clients for level-two servers. The clients ask the directory where a server is located, and then communicate with it. Using RPCGEN, we can create a pair of client-server code; however, the clients in this case need to have stubs for the directory as well as the level-two functions. Being a newbie to RPC, I'm having trouble conceptualizing the way I should code this. How can I call a function from a different server if a client is generated using a different IDL ? Any pointers would be appreciated :) Regards, Abhi

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  • PHP set timeout for script with system call, set_time_limit not working

    - by tehalive
    I have a command-line PHP script that runs a wget request using each member of an array with foreach. This wget request can sometimes take a long time so I want to be able to set a timeout for killing the script if it goes past 15 seconds for example. I have PHP safemode disabled and tried set_time_limit(15) early in the script, however it continues indefinitely. Update: Thanks to Dor for pointing out this is because set_time_limit() does not respect system() calls. So I was trying to find other ways to kill the script after 15 seconds of execution. However, I'm not sure if it's possible to check the time a script has been running while it's in the middle of a wget request at the same time (a do while loop did not work). Maybe fork a process with a timer and set it to kill the parent after a set amount of time? Thanks for any tips! Update: Below is my relevant code. $url is passed from the command-line and is an array of multiple URLs (sorry for not posting this initially): foreach( $url as $key => $value){ $wget = "wget -r -H -nd -l 999 $value"; system($wget); }

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  • A method to change effective user id of a running program?

    - by Brendan Long
    I'm writing a simple package manager and I'd like to automatically try sudo if the program isn't run as root. I found a function called seteuid, which looks likes it's exactly what I need, but I don't have the permissions to run it. So far all I can think of is a bash script to check before they get to the actual binary, but I'd like to do this all as C++ if possible. Is there any method of changing a processes's euid after it starts executing? Or a way to call sudo?

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  • ubuntu: sem_timedwait not waking (C)

    - by gillez
    I have 3 processes which need to be synchronized. Process one does something then wakes process two and sleeps, which does something then wakes process three and sleeps, which does something and wakes process one and sleeps. The whole loop is timed to run around 25hz (caused by an external sync into process one before it triggers process two in my "real" application). I use sem_post to trigger (wake) each process, and sem_timedwait() to wait for the trigger. This all works successfully for several hours. However at some random time (usually after somewhere between two and four hours), one of the processes starts timing out in sem_timedwait(), even though I am sure the semaphore is being triggered with sem_post(). To prove this I even use sem_getvalue() immediately after the timeout, and the value is 1, so the timedwait should have been triggered. Please see following code: #include <stdio.h> #include <time.h> #include <string.h> #include <errno.h> #include <semaphore.h> sem_t trigger_sem1, trigger_sem2, trigger_sem3; // The main thread process. Called three times with a different num arg - 1, 2 or 3. void *thread(void *arg) { int num = (int) arg; sem_t *wait, *trigger; int val, retval; struct timespec ts; struct timeval tv; switch (num) { case 1: wait = &trigger_sem1; trigger = &trigger_sem2; break; case 2: wait = &trigger_sem2; trigger = &trigger_sem3; break; case 3: wait = &trigger_sem3; trigger = &trigger_sem1; break; } while (1) { // The first thread delays by 40ms to time the whole loop. // This is an external sync in the real app. if (num == 1) usleep(40000); // print sem value before we wait. If this is 1, sem_timedwait() will // return immediately, otherwise it will block until sem_post() is called on this sem. sem_getvalue(wait, &val); printf("sem%d wait sync sem%d. val before %d\n", num, num, val); // get current time and add half a second for timeout. gettimeofday(&tv, NULL); ts.tv_sec = tv.tv_sec; ts.tv_nsec = (tv.tv_usec + 500000); // add half a second if (ts.tv_nsec > 1000000) { ts.tv_sec++; ts.tv_nsec -= 1000000; } ts.tv_nsec *= 1000; /* convert to nanosecs */ retval = sem_timedwait(wait, &ts); if (retval == -1) { // timed out. Print value of sem now. This should be 0, otherwise sem_timedwait // would have woken before timeout (unless the sem_post happened between the // timeout and this call to sem_getvalue). sem_getvalue(wait, &val); printf("!!!!!! sem%d sem_timedwait failed: %s, val now %d\n", num, strerror(errno), val); } else printf("sem%d wakeup.\n", num); // get value of semaphore to trigger. If it's 1, don't post as it has already been // triggered and sem_timedwait on this sem *should* not block. sem_getvalue(trigger, &val); if (val <= 0) { printf("sem%d send sync sem%d. val before %d\n", num, (num == 3 ? 1 : num+1), val); sem_post(trigger); } else printf("!! sem%d not sending sync, val %d\n", num, val); } } int main(int argc, char *argv[]) { pthread_t t1, t2, t3; // create semaphores. val of sem1 is 1 to trigger straight away and start the whole ball rolling. if (sem_init(&trigger_sem1, 0, 1) == -1) perror("Error creating trigger_listman semaphore"); if (sem_init(&trigger_sem2, 0, 0) == -1) perror("Error creating trigger_comms semaphore"); if (sem_init(&trigger_sem3, 0, 0) == -1) perror("Error creating trigger_vws semaphore"); pthread_create(&t1, NULL, thread, (void *) 1); pthread_create(&t2, NULL, thread, (void *) 2); pthread_create(&t3, NULL, thread, (void *) 3); pthread_join(t1, NULL); pthread_join(t2, NULL); pthread_join(t3, NULL); } The following output is printed when the program is running correctly (at the start and for a random but long time after). The value of sem1 is always 1 before thread1 waits as it sleeps for 40ms, by which time sem3 has triggered it, so it wakes straight away. The other two threads wait until the semaphore is received from the previous thread. [...] sem1 wait sync sem1. val before 1 sem1 wakeup. sem1 send sync sem2. val before 0 sem2 wakeup. sem2 send sync sem3. val before 0 sem2 wait sync sem2. val before 0 sem3 wakeup. sem3 send sync sem1. val before 0 sem3 wait sync sem3. val before 0 sem1 wait sync sem1. val before 1 sem1 wakeup. sem1 send sync sem2. val before 0 [...] However, after a few hours, one of the threads begins to timeout. I can see from the output that the semaphore is being triggered, and when I print the value after the timeout is is 1. So sem_timedwait should have woken up well before the timeout. I would never expect the value of the semaphore to be 1 after the timeout, save for the very rare occasion (almost certainly never but it's possible) when the trigger happens after the timeout but before I call sem_getvalue. Also, once it begins to fail, every sem_timedwait() on that semaphore also fails in the same way. See the following output, which I've line-numbered: 01 sem3 wait sync sem3. val before 0 02 sem1 wakeup. 03 sem1 send sync sem2. val before 0 04 sem2 wakeup. 05 sem2 send sync sem3. val before 0 06 sem2 wait sync sem2. val before 0 07 sem1 wait sync sem1. val before 0 08 !!!!!! sem3 sem_timedwait failed: Connection timed out, val now 1 09 sem3 send sync sem1. val before 0 10 sem3 wait sync sem3. val before 1 11 sem3 wakeup. 12 !! sem3 not sending sync, val 1 13 sem3 wait sync sem3. val before 0 14 sem1 wakeup. [...] On line 1, thread 3 (which I have confusingly called sem1 in the printf) waits for sem3 to be triggered. On line 5, sem2 calls sem_post for sem3. However, line 8 shows sem3 timing out, but the value of the semaphore is 1. thread3 then triggers sem1 and waits again (10). However, because the value is already 1, it wakes straight away. It doesn't send sem1 again as this has all happened before control is given to thread1, however it then waits again (val is now 0) and sem1 wakes up. This now repeats for ever, sem3 always timing out and showing that the value is 1. So, my question is why does sem3 timeout, even though the semaphore has been triggered and the value is clearly 1? I would never expect to see line 08 in the output. If it times out (because, say thread 2 has crashed or is taking too long), the value should be 0. And why does it work fine for 3 or 4 hours first before getting into this state? This is using Ubuntu 9.4 with kernel 2.6.28. The same procedure has been working properly on Redhat and Fedora. But I'm now trying to port to ubuntu! Thanks for any advice, Giles

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  • Ideal Multi-Developer Lamp Stack?

    - by devians
    I would like to build an 'ideal' lamp development stack. Dual Server (Virtualised, ESX) Apache / PHP on one, Databases (MySQL, PgSQL, etc) on the other. User (Developer) Manageable mini environments, or instance. Each developer instance shares the top level config (available modules and default config etc) A developer should have control over their apache and php version for each project. A developer might be able to change minor settings, ie magicquotes on for legacy code. Each project would determine its database provider in its code The idea is that it is one administrate-able server that I can control, and provide globally configured things like APC, Memcached, XDebug etc. Then by moving into subsets for each project, i can allow my users to quickly control their environments for various projects. Essentially I'm proposing the typical system of a developer running their own stack on their own machine, but centralised. In this way I'd hope to avoid problems like Cross OS code problems, database inconsistencies, slightly different installs producing bugs etc. I'm happy to manage this in custom builds from source, but if at all possible it would be great to have a large portion of it managed with some sort of package management. We typically use CentOS, so yum? Has anyone ever built anything like this before? Is there something turnkey that is similar to what I have described? Are there any useful guides I should be reading in order to build something like this?

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  • MySQL Backup: Can I copying individual MyISAM table files to another server with different MySQL ver

    - by Komputer
    I means copying individual MyISAM table files is: (shut down mysqld and copy the .frm, .myd, and .myi files from one database folder to another) Question: (a) can I use this way to backup MySQL database folder from one server to another server with different MySQL version? (b) can this backup files moved to different OS? (example: debian to centos) thanks in advance.

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