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  • Linux buffer cache effect on IO writes?

    - by Patrick LeBoutillier
    I'm copying large files (3 x 30G) between 2 filesystems on a Linux server (kernel 2.6.37, 16 cores, 32G RAM) and I'm getting poor performance. I suspect that the usage of the buffer cache is killing the I/O performance. To try and narrow down the problem I used fio directly on the SAS disk to monitor the performance. Here is the output of 2 fio runs (the first with direct=1, the second one direct=0): Config: [test] rw=write blocksize=32k size=20G filename=/dev/sda # direct=1 Run 1: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/205M /s] [0/6K iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4667 write: io=20,480MB, bw=199MB/s, iops=6,381, runt=102698msec clat (usec): min=104, max=13,388, avg=152.06, stdev=72.43 bw (KB/s) : min=192448, max=213824, per=100.01%, avg=204232.82, stdev=4084.67 cpu : usr=3.37%, sys=16.55%, ctx=655410, majf=0, minf=29 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 250=99.50%, 500=0.45%, 750=0.01%, 1000=0.01% lat (msec): 2=0.01%, 4=0.02%, 10=0.01%, 20=0.01% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=199MB/s, minb=204MB/s, maxb=204MB/s, mint=102698msec, maxt=102698msec Disk stats (read/write): sda: ios=0/655238, merge=0/0, ticks=0/79552, in_queue=78640, util=76.55% Run 2: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/0K /s] [0/0 iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4733 write: io=20,480MB, bw=91,265KB/s, iops=2,852, runt=229786msec clat (usec): min=16, max=127K, avg=349.53, stdev=4694.98 bw (KB/s) : min=56013, max=1390016, per=101.47%, avg=92607.31, stdev=167453.17 cpu : usr=0.41%, sys=6.93%, ctx=21128, majf=0, minf=33 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 20=5.53%, 50=93.89%, 100=0.02%, 250=0.01%, 500=0.01% lat (msec): 2=0.01%, 4=0.01%, 10=0.01%, 20=0.01%, 50=0.12% lat (msec): 100=0.38%, 250=0.04% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=91,265KB/s, minb=93,455KB/s, maxb=93,455KB/s, mint=229786msec, maxt=229786msec Disk stats (read/write): sda: ios=8/79811, merge=7/7721388, ticks=9/32418456, in_queue=32471983, util=98.98% I'm not knowledgeable enough with fio to interpret the results, but I don't expect the overall performance using the buffer cache to be 50% less than with O_DIRECT. Can someone help me interpret the fio output? Are there any kernel tunings that could fix/minimize the problem? Thanks a lot,

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  • Linux buffer cache effect on IO writes?

    - by Patrick LeBoutillier
    Hi, I'm copying large files (3 x 30G) between 2 filesystems on a Linux server (kernel 2.6.37, 16 cores, 32G RAM) and I'm getting poor performance. I suspect that the usage of the buffer cache is killing the I/O performance. To try and narrow down the problem I used fio directly on the SAS disk to monitor the performance. Here is the output of 2 fio runs (the first with direct=1, the second one direct=0): Config: [test] rw=write blocksize=32k size=20G filename=/dev/sda # direct=1 Run 1: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/205M /s] [0/6K iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4667 write: io=20,480MB, bw=199MB/s, iops=6,381, runt=102698msec clat (usec): min=104, max=13,388, avg=152.06, stdev=72.43 bw (KB/s) : min=192448, max=213824, per=100.01%, avg=204232.82, stdev=4084.67 cpu : usr=3.37%, sys=16.55%, ctx=655410, majf=0, minf=29 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 250=99.50%, 500=0.45%, 750=0.01%, 1000=0.01% lat (msec): 2=0.01%, 4=0.02%, 10=0.01%, 20=0.01% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=199MB/s, minb=204MB/s, maxb=204MB/s, mint=102698msec, maxt=102698msec Disk stats (read/write): sda: ios=0/655238, merge=0/0, ticks=0/79552, in_queue=78640, util=76.55% Run 2: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/0K /s] [0/0 iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4733 write: io=20,480MB, bw=91,265KB/s, iops=2,852, runt=229786msec clat (usec): min=16, max=127K, avg=349.53, stdev=4694.98 bw (KB/s) : min=56013, max=1390016, per=101.47%, avg=92607.31, stdev=167453.17 cpu : usr=0.41%, sys=6.93%, ctx=21128, majf=0, minf=33 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 20=5.53%, 50=93.89%, 100=0.02%, 250=0.01%, 500=0.01% lat (msec): 2=0.01%, 4=0.01%, 10=0.01%, 20=0.01%, 50=0.12% lat (msec): 100=0.38%, 250=0.04% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=91,265KB/s, minb=93,455KB/s, maxb=93,455KB/s, mint=229786msec, maxt=229786msec Disk stats (read/write): sda: ios=8/79811, merge=7/7721388, ticks=9/32418456, in_queue=32471983, util=98.98% I'm not knowledgeable enough with fio to interpret the results, but I don't expect the overall performance using the buffer cache to be 50% less than with O_DIRECT. Can someone help me interpret the fio output? Are there any kernel tunings that could fix/minimize the problem? Thanks a lot,

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  • MAMP Pro .xip.io, fixing urls with htaccess

    - by user3540018
    I've got all my websites set up with MAMP Pro. For instance, I got it set up, so when I go to example.com, the browser displays the website that's set up on my iMac. Now, I wanna get MAMP Pro to work so I can view my website on my other computers/devices (which are all hooked up on the same network.) So far all I had to do is check the checkbox "via Xip.io (LAN only)", and now I can view my website on my other computers/devices within my LAN by simply going to example.com.10.0.1.13.xip.io. Problem is, whenever I'm on this other computer/device, when I click on the links, I get 404 error. ie. whenever I go to example.com/news, I get the 404. But when I go to example.com.10.0.1.13.xip.io/news, THEN I get the right page. So in order to solve my problem I need to rewrite the urls. So whenever someone clicks on a link ie. goes straight to example.com/news, he'll go to example.com.10.0.1.13.xip.io/news. I don't want to change all the links in my MySQL file, but I believe I can do it simply with the htaccess file. I've opened the htaccess file and added the last two lines, but it just doesn't work. <IfModule mod_rewrite.c> RewriteEngine On # Send would-be 404 requests to Craft RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteCond %{REQUEST_URI} !^/(favicon\.ico|apple-touch-icon.*\.png)$ [NC] RewriteRule (.+) index.php?p=$1 [QSA,L] RewriteCond %{HTTP_HOST} ^example\.com RewriteRule ^(.*)$ http://www.example.com.10.0.1.13.xip.io/$1 [R=permanent,L] </IfModule> Or perhaps I don't need to change the htaccess file, is there something that I could be missing in the MAMP Pro settings, or perhaps a MAMP extension that I need?

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  • Determining which database instance makes biggest IO

    - by user2008937
    Assuming that I have a dedicated server on which I am running multiple instances of mysql and postresql servers. How without iotop determine which instance in particular time (proc/pid/io shows data collected in some peroid of time) makes the biggest IO (so it increases IOWAIT)? When lots of ppl do something on DB then I clearly see which instance is making the load because of high cpu usage, but I had a situation when the cpu usage was just normal, but very high iowait made a huge load on server and i had problem finding process that was making some outstanding IO

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  • Creating a Serializable mock with Mockito error

    - by KwintenP
    I'm trying to create a mock object with Mockito that can be serialized. The object is an interface implementation. When this method is called, I receive an object that I want to pass to another object, hence using the doAnswer(...)-method. This is my code. InterfaceClass obj = mock(InterfaceClass.class, withSettings().serializable()); doAnswer(new Answer<Object>() { public Object answer(InvocationOnMock invocation) throws Throwable { Object[] args = invocation.getArguments(); //Here I do something with the arguments } }).when(obj).someMethod( any(someObject.class)); ByteArrayOutputStream bos = new ByteArrayOutputStream(); ObjectOutput out = null; try { out = new ObjectOutputStream(bos); out.writeObject(obj); byte[] yourBytes = bos.toByteArray(); } finally { out.close(); bos.close(); } As far as I can tell this should be correct (I'm fairly new to Mockito). But when Serializing my object I get this error: java.io.NotSerializableException: com.trust1t.ocs.signcore.test.InvalidInputTestCase$1 at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1165) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at java.util.concurrent.ConcurrentLinkedQueue.writeObject(ConcurrentLinkedQueue.java:644) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:950) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1482) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at java.util.LinkedList.writeObject(LinkedList.java:943) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:950) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1482) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at com.trust1t.ocs.signcore.test.InvalidInputTestCase.certificateValidationTest(InvalidInputTestCase.java:117) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) The invalidInputTestCase class is the class containing the test where I'm using this code. It looks as if the mock object references this TestCase somewhere (can't find it though). Am I not correctly implementing this or better ideas to mock?

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  • C# Deleting Locked Files & Folders

    - by orangecl4now
    Hello I am writing an application that updates some drivers. However the drivers are "in use" and can't be deleted unless I restart my computer. So how can I write an application to delete these locked drivers without restarting the PC. IF Restarting MUST occur then how can I relaunch my application automatically when the computer restarts and delete those files?

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  • How to remove duplicate line in a file

    - by Abs
    Hi I'm using the below method to write to a file from the Jtextarea and I call this method every 30 second within a Timer but instead to add only new line in file it rewrite the entire lines contained in Jtextarea so then I have duplicate lines. I want to avoid this and update the file just with new lines. Could you help me please. public void loger() { FileWriter writer = null; try { writer = new FileWriter("MBM_Log_"+date()+".txt" , true); textArea.write(writer); } catch (IOException exception) { System.err.println("log error"); exception.printStackTrace(); } finally { if (writer != null) { try { writer.close(); } catch (IOException exception) { System.err.println("Error closing writer"); exception.printStackTrace(); } } } }

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  • Java reading files......

    - by user69514
    Ok this is a homework questions, but I cannot find the answer anywhere, not even in the book. Path to Files If the user wants to specify a path for a file, the typical forward slash is replaced by ________. can you help?

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  • Lucene Error While Reading binary block : java.io.EOFException

    - by tushar Khairnar
    Hi, I am getting java.io.EOFException while reading a binary block from lucene index. I am storing java object as byte-array in lucene index field and reading it when hit occurs. Here is stack trace : Caused by: java.io.EOFException at java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2281) at java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:2750) at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:780) at java.io.ObjectInputStream.(ObjectInputStream.java:280) at org.terracotta.modules.searchable.util.SerializationUtil$OIS.(SerializationUtil.java:20) I have some background threads which write into index. But i buffer them and then write them at once like 1000. Occasionally I also issue optimize() on index. When I write, I am re-opening IndexReader. Does this is happening because of IndexReader re-opening call? Thanks. Regards Tushar

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  • When does ref($variable) return 'IO'?

    - by Zaid
    Here's the relevant excerpt from the documentation of the ref function: The value returned depends on the type of thing the reference is a reference to. Builtin types include: SCALAR ARRAY HASH CODE REF GLOB LVALUE FORMAT IO VSTRING Regexp Based on this, I imagined that calling ref on a filehandle would return 'IO'. Surprisingly, it doesn't: use strict; use warnings; open my $fileHandle, '<', 'aValidFile'; close $fileHandle; print ref $fileHandle; # prints 'GLOB', not 'IO' perlref tries to explain why: It isn't possible to create a true reference to an IO handle (filehandle or dirhandle) using the backslash operator. The most you can get is a reference to a typeglob, which is actually a complete symbol table entry [...] However, you can still use type globs and globrefs as though they were IO handles. In what circumstances would ref return 'IO' then?

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  • How to change I/O priority of a process or thread in Win7?

    - by romkyns
    Process Explorer is able to show the effective IO priority of a given thread, but not change it. Seeing as IO priority support is a comparatively new feature, most programs don't set their own IO priorities. It appears that by default the IO priority is derived from the thread priority (rather than process priority), which Process Explorer can't modify either. Are there any other tools out there that can help me change the IO priority of a given thread / all threads of a given process?

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  • Why is my CalendarExtender getting overlapped when rendered?

    - by Dillie-O
    I'm working on a .NET web application and I'm using a CalendarExtender control within it to have the user specify a date. For some reason, when I click the icon to display the calendar, the background seems to be transparent, shown below: I'm using the extender on other pages and do not run into this issue. I'm not sure if it is worth mentioning, but the calendar is nested within a panel that has a rounded corner extender attached to it, as well as the panel below it (where the "From" is overlapping). Within that panel, I do have a div layout setup to create two columns. EDIT: The other thing to note here is that the section that has the name and "placeholders" for nickname are all ASP.NET label controls, if that matters.

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  • Anchor bug on IE9, anchor hitbox overlapped

    - by user1456399
    The menu below works just fine in Firefox and Chrome, but in IE9, but hitbox for the "HOME" anchor is being covered partially by the list item behind it except for the actual test, and a single horizontal pixel line at the top and bottom of the button. Can anyone see what I'm missing? Code to follow: index.html <html lang="en"> <head> <meta http-equiv="Content-Type" content="text/html;charset=utf-8" > <title>Navigation</title> <style> .menu-container { width:960px; height:45px; margin:0 auto; position:relative; z-index:2; background-color: #3d3d3d; margin-bottom: 20px; } .menu-navigation { font-family:Arial, Helvetica, sans-serif; font-size:13px; list-style:none; padding:0; margin:0; text-align: right; font-size: 0; /* Removes whitespace between <li> */ } .menu-navigation > li { display:inline; margin:0; border-left:solid 1px #242424; background-color:transparent; font-size: 12px; padding: 15px 0 15px 0; } .menu-navigation > li:hover, .menu-navigation > li.current-menu-item { background-color:#202020; } .menu-navigation > li.active, .menu-navigation > li.active:hover { background-color:#131313; } .menu-navigation > li a { text-decoration:none; color:#bbbbbb; } .menu-navigation > li a:hover { color:#efefef; } .menu-navigation > li span a { color:#ffffff; } .menu-navigation > li a:focus { outline:none; } .menu-navigation > li.menu-item-parent > span, .menu-navigation > li > span > a { text-transform:uppercase; outline:0; text-decoration:none; color:#ffffff; text-shadow:1px 1px 1px #000000; line-height: 45px; display: inline-block; height: 45px; padding: 0 20px 0 20px; } .menu-navigation > li.menu-item-parent > span { background:url("../img/down.png") no-repeat right center; } .menu-navigation > li.menu-item-parent > span:hover, .menu-navigation > li > span > a:hover { cursor:pointer; } </style> </head> <body> <div class="menu-container"> <ul class="menu-navigation"> <li><span><a href="#">This is a link</a></span></li> <li><span><a href="#">This is a link</a></span></li> <li class="menu-item-parent"><span>Not a link</span></li> <li class="menu-item-parent"><span>Not a link</span></li> <li class="menu-item-parent"><span>Not a link</span></li> </ul> </div> </body> </html> EDIT: Alright, I've changed the code to isolate the issue, and narrowed down the problem CSS. Simply adding a background image fixes the issue. The code is set up so it styles so the hit boxes for all the menu items are the same regardless if there's a link in them or not to facilitate an "onClick" drop down on those menu items without anchors. Refer to lines 81 - 86. Remove those lines (just a background image), and the hit box issue is seen in the menu items "NOT A LINK" as well. Further, the act of adding a background image fixes the hit box issue of "THIS IS A LINK" menu items. Simply add the following snippet to the CSS: .menu-navigation > li > span > a { background:url("../img/down.png") no-repeat right center; } Adding a background image, even if there is no actual image, is changing something with regards to the hit box... I'm just not sure what...

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  • Perl IO modules possibly causing issues in Net::DNS module

    - by Rich
    Hi! I’m porting some software that I wrote for a White Russian OpenWRT system to a new Kamikaze 8.09.1 OpenWRT system but I am having some serious issues that I’m hoping you can help me with. Old system Linux kernel 2.4.34 MIPSEL arch Perl 5.8.7 Net::DNS 0.48 IO 1.21 IO::Socket 1.28 IO::Socket::INET 1.28 New system Linux kernel 2.6.26.8 MIPS arch Perl 5.10.0 Net::DNS 0.66 IO 1.23_01 IO::Socket 1.30_01 IO::Socket::INET 1.31 First, let me provide some background information… I am trying to resolve my server (clearprobe.winbeam.com) from within my Perl program and see the following if I enable debugging in Net::DNS: resolve: Server 'clearprobe-ddns.winbeam.com' ;; query(clearprobe-ddns.winbeam.com) ;; setting up an AF_INET() family type UDP socket ;; send_udp(192.168.88.1:53) ;; send_udp(4.2.2.2:53) ;; send_udp(192.168.88.1:53) ;; send_udp(4.2.2.2:53) resolve: res->errorstring: query timed out Both of these servers resolve clearprobe.winbeam.com fine from the command line: root@cwb-2-11:~# echo “nameserver 192.168.88.1” > /etc/resolv.conf root@cwb-2-11:~# nslookup clearprobe-ddns.winbeam.com Server: 192.168.88.1 Address 1: 192.168.88.1 router Name: clearprobe-ddns.winbeam.com Address 1: 64.13.48.40 64-13-48-40.war.clearwire-dns.net root@cwb-2-11:~# echo “nameserver 4.2.2.2” > /etc/resolv.conf root@cwb-2-11:~# nslookup clearprobe-ddns.winbeam.com Server: 4.2.2.2 Address 1: 4.2.2.2 vnsc-bak.sys.gtei.net Name: clearprobe-ddns.winbeam.com Address 1: 64.13.48.40 64-13-48-40.war.clearwire-dns.net Using Perl’s call to the C gethostbyaddr() function works fine, but I need to do another lookup later in the software which requires that I specify the nameserver (clearprobe-ddns.winbeam.com is the authority for my internal DNS zone), hence my Net::DNS requirement. Now, here is the IO module-specific information: What I am seeing is that the reply is coming back from the nameserver (confirmed via tcpdump – I can send the captures if you’d like), but the UDP packets are sitting in the process’s UDP receive queue pending reception by Net::DNS (the approx 1752 bytes per response stay queued waiting for $sel-can_read()): root@cwb-2-11:~# netstat -una Active Internet connections (servers and established) Proto Recv-Q Send-Q Local Address Foreign Address State udp 1752 0 0.0.0.0:52680 0.0.0.0:* root@cwb-2-11:~# netstat -una Active Internet connections (servers and established) Proto Recv-Q Send-Q Local Address Foreign Address State udp 5256 0 0.0.0.0:52680 0.0.0.0:* If I force $sock[AF_INET]-recv($buf, $self-_packetsz) around line 803 of /usr/lib/perl5/5.10/Net/DNS/Resolver/Base.pm, instead of waiting for IO::Select’s can_read() function ( @ready = $sel-can_read($timeout)) to populate @ready, the response is received and processed. Any idea what could be causing this issue? In a possibly related matter, I noticed in another script that the following code fails in the same manner (network responses stay in the process’s TCP receive queue) with the new system: $sock = new IO::Socket::INET( PeerAddr => "$server", PeerPort => 37, Proto => 'tcp', Timeout => 5 ); Whereas the following code works: $sock = new IO::Socket::INET( PeerAddr => "$server", PeerPort => 37, Proto => 'tcp' ); I have looked through the NET::DNS code and don’t see a timeout passed for the UDP sockets, so I am not sure if that this is related or not. Please let me know if I can provide you with any further information in order to help diagnose this issue. Thanks! -Rich

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  • How do I handle partial write completions from overlapped I/O using I/O Completion Ports

    - by Poni
    On Windows I/O completion ports, say I do this: void function() { WSASend("1111"); // A WSASend("2222"); // B WSASend("3333"); // C } If I got a "write-complete" that says 3 bytes of WSASend() A were sent, is it possible that right after that I'll get a "write-complete" that tells me that some or all of B & C were sent, or will TCP will hold them until I re-issue a WSASend() call with the rest of A's data? Or will TCP complete it automatically?

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  • Finding efficient overlapped entries in a SQL table

    - by Laoneo
    What is the most efficient way to find all entries which do overlap with others in the same table? Every entry has a start and end date. For example I have the following database setup: CREATE TABLE DEMO ( DEMO_ID int IDENTITY , START date NOT NULL , END date NOT NULL }; INSERT INTO DEMO (DEMO_ID, START, END) VALUES (1, '20100201', '20100205'); INSERT INTO DEMO (DEMO_ID, START, END) VALUES (2, '20100202', '20100204'); INSERT INTO DEMO (DEMO_ID, START, END) VALUES (3, '20100204', '20100208'); INSERT INTO DEMO (DEMO_ID, START, END) VALUES (4, '20100206', '20100211'); My query looks as follow: SELECT DISTINCT * FROM DEMO A, DEMO B WHERE A.DEMO_ID != B.DEMO_ID AND A.START < B.END AND B.START < A.END The problem is when my demo table has for example 20'000 rows the query takes too long. My environment is MS SQL Server 2008. Thanks for any more efficient solution

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  • java.util.ConcurrentModificationException when serializing non thread-safe maps

    - by [email protected]
    We have got some questions related to exceptions thrown during a map serialization like the following one (in this example, for a LRUMap): java.util.ConcurrentModificationExceptionat org.apache.commons.collections.SequencedHashMap$OrderedIterator.next(Unknown Source)at org.apache.commons.collections.LRUMap.writeExternal(Unknown Source)at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.writeSerializable(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.util.ExternalizableHelper.writeObjectInternal(ExternalizableHelper.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.serializeInternal(ExternalizableHelper.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.toBinary(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.util.ExternalizableHelper.toBinary(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.coherence.servlet.TraditionalHttpSessionModel$OptimizedHolder.serializeValue(TraditionalHttpSessionModel.java(Inlined Compiled Code))at com.tangosol.coherence.servlet.TraditionalHttpSessionModel$OptimizedHolder.getBinary(TraditionalHttpSessionModel.java(Compiled Code)) This is caused because LRUMap is not thread safe, so if another thread is modifying the content of that same map while serialization is in progress, then the ConcurrentModificationException will be thrown. Also, the map must be synchronized. Other structures like java.util.HashMap are not thread safe too. To avoid this kind of problems, it is recommended to use a thread-safe and synchronized map such as java.util.Map, java.util.Hashtable or com.tangosol.util.SafeHashMap. You may also need to use the synchronizedMap(Map) method from Class java.util.Collections.  

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  • High data on recv-q buffer and thread lock on java.io.BufferedInputStream in linux

    - by Sagar Patel
    We have a java application running on linux (ubuntu server). We have been facing high recv-q problem since quite some time. Application gets hang and does not read data from socket every few hours. In thread dump, we have found below stack trace. "Receiver-146" daemon prio=10 tid=0x00007fb3fc010000 nid=0x7642 runnable [0x00007fb5906c5000] java.lang.Thread.State: RUNNABLE at java.net.SocketInputStream. socketRead0(Native Method) at java.net.SocketInputStream.read(SocketInputStream.java:150) at java.net.SocketInputStream.read(SocketInputStream.java:121) at java.io.BufferedInputStream.fill(BufferedInputStream.java:235) at java.io.BufferedInputStream.read1(BufferedInputStream.java:275) at java.io.BufferedInputStream.read(BufferedInputStream.java:334) - locked <0x00000007688f1ff0> (a java.io.BufferedInputStream) at org.smpp.TCPIPConnection.receive(TCPIPConnection.java:413) at org.smpp.ReceiverBase.receivePDUFromConnection(ReceiverBase.java:197) at org.smpp.Receiver.receiveAsync(Receiver.java:351) at org.smpp.ReceiverBase.process(ReceiverBase.java:96) at org.smpp.util.ProcessingThread.run(ProcessingThread.java:199) at java.lang.Thread.run(Thread.java:722) We are not able to trace the exact reason behind this? Kindly help. We are using 16 core machine and load on the system is around 30-40 at the time of issue. We use command ss dst <ip> to find out recv-q. Recently we have been facing issues with recv-q size getting hung, were in receive buffer gets stuck at some point of time. But recvQ size is not decreasing and as a result we are losing a lot of hits from the other side, our application is not accepting any data.

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  • Tip #13 java.io.File Surprises

    - by ByronNevins
    There is an assumption that I've seen in code many times that is totally wrong.  And this assumption can easily bite you.  The assumption is: File.getAbsolutePath and getAbsoluteFile return paths that are not relative.  Not true!  Sort of.  At least not in the way many people would assume.  All they do is make sure that the beginning of the path is absolute.  The rest of the path can be loaded with relative path elements.  What do you think the following code will print? public class Main {    public static void main(String[] args) {        try {            File f = new File("/temp/../temp/../temp/../");            File abs  = f.getAbsoluteFile();            File parent = abs.getParentFile();            System.out.println("Exists: " + f.exists());            System.out.println("Absolute Path: " + abs);            System.out.println("FileName: " + abs.getName());            System.out.printf("The Parent Directory of %s is %s\n", abs, parent);            System.out.printf("The CANONICAL Parent Directory of CANONICAL %s is %s\n",                        abs, abs.getCanonicalFile().getParent());            System.out.printf("The CANONICAL Parent Directory of ABSOLUTE %s is %s\n",                        abs, parent.getCanonicalFile());            System.out.println("Canonical Path: " + f.getCanonicalPath());        }        catch (IOException ex) {            System.out.println("Got an exception: " + ex);        }    }} Output: Exists: trueAbsolute Path: D:\temp\..\temp\..\temp\..FileName: ..The Parent Directory of D:\temp\..\temp\..\temp\.. is D:\temp\..\temp\..\tempThe CANONICAL Parent Directory of CANONICAL D:\temp\..\temp\..\temp\.. is nullThe CANONICAL Parent Directory of ABSOLUTE D:\temp\..\temp\..\temp\.. is D:\tempCanonical Path: D:\ Notice how it says that the parent of d:\ is d:\temp !!!The file, f, is really the root directory.  The parent is supposed to be null. I learned about this the hard way! getParentXXX simply hacks off the final item in the path. You can get totally unexpected results like the above. Easily. I filed a bug on this behavior a few years ago[1].   Recommendations: (1) Use getCanonical instead of getAbsolute.  There is a 1:1 mapping of files and canonical filenames.  I.e each file has one and only one canonical filename and it will definitely not have relative path elements in it.  There are an infinite number of absolute paths for each file. (2) To get the parent file for File f do the following instead of getParentFile: File parent = new File(f, ".."); [1] http://bt2ws.central.sun.com/CrPrint?id=6687287

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  • chromium-browser usus 99,99% IO disk

    - by lars
    My favorite browser: chromium is testing my patience. For some reason it sometimes uses 99,99% of I/O. (reading 2-3MB/s) Other processes (updatedb.mlocate, [kswapd0], clementine, compiz) show the same behavior. However this problem always starts and ends with chromium. To illustrate the impact on my system: when my disk starts to spin like crazy en the led burns continiously the system is so slow that it takes about two to five minuits to switch to tty6, log in and execute "killall chromiumbrowser && killall chromium" This is way faster than starting a new terminal in X, just starting a terminal seems to heavy for compiz under these circumstances. Waiting until its over takes more than 30 minuits, if it ends at all. The exact circumstances are difficult to replicate. Several tabs have to be open, usualy 8 or more. It seems that the chance to increases when more complex sites like gmail of plugins like flash are running. Opening several new tabs at omgubunt.co.uk has the best chance to replecate this isue. I have no idea where to start looking for a solution. Any help would be greatly apreciated ubuntu 12.10 | 2GB | 2x 1.66GHz Intel | 32bit | IBM Thinkpad R60e

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  • A programming language that does not allow IO. Haskell is not a pure language

    - by TheIronKnuckle
    (I asked this on Stack Overflow and it got closed as off-topic, I was a bit confused until I read the FAQ, which discouraged subjective theoratical debate style questions. The FAQ here doesn't seem to have a problem with it and it sounds like this is a more appropriate place to post. If this gets closed again, forgive me, I'm not trying to troll) Are there any 100% pure languages (as I describe in the Stack Overflow post) out there already and if so, could they feasibly be used to actually do stuff? i.e. do they have an implementation? I'm not looking for raw maths on paper/Pure lambda calculus. However Pure lambda calculus with a compiler or a runtime system attached is something I'd be interested in hearing about.

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  • How to monitor IO svctm with every 5 mins frequency using nagios?

    - by sabya
    I want to collect samples of iostat's svctm, await every 5 mins from all of my servers and store them in nagios. I want to get the values for what is happening in every 5 minutes (not since boot time, iostat's first output gives values since boot time). How can I do it in nagios? EDIT The tps should NOT be calculated #of transactions happened since reboot divided by uptime. What I want is # of transferred happened in last X mins divided X*60.

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