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  • Error when trying to create a faceted plot in ggplot2

    - by John Horton
    I am trying to make a faceted plot in ggplot2 of the coefficients on the regressors from two linear models with the same predictors. The data frame I constructed is this: r.together> reg coef se y 1 (Intercept) 5.068608671 0.6990873 Labels 2 goodTRUE 0.310575129 0.5228815 Labels 3 indiaTRUE -1.196868662 0.5192330 Labels 4 moneyTRUE -0.586451273 0.6011257 Labels 5 maleTRUE -0.157618168 0.5332040 Labels 6 (Intercept) 4.225580743 0.6010509 Bonus 7 goodTRUE 1.272760149 0.4524954 Bonus 8 indiaTRUE -0.829588862 0.4492838 Bonus 9 moneyTRUE -0.003571476 0.5175601 Bonus 10 maleTRUE 0.977011737 0.4602726 Bonus The "y" column is a label for the model, reg are the regressors and coef and se are what you would think. I want to plot: g <- qplot(reg, coef, facets=.~y, data = r.together) + coord_flip() But when I try to display the plot, I get: > print(g) Error in names(df) <- output : 'names' attribute [2] must be the same length as the vector [1] What's strange is that qplot(reg, coef, colour=y, data = r.together) + coord_flip() plots as you would expect.

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  • Add title to meta analysis forest plot

    - by Timothy Alston
    I am meta-analysing some studies and drawing a forest plot for my results. However I can`t seem to get the forest plot to display the title. An example of my code is: require(meta) parameter1<-metaprop(sm="PLOGIT", event=c(4,16,3,2,10,1,0,2), n=c(90,402,89,29,153,86,21,48), level = 0.95, studlab=c("study 1", "study 2", "study 3", "study 4", "study 5", "study 6", "study 7", "study 8"), title="meta analysis 1") forest(parameter1) When it produces the forest plot, the title "meta analysis 1" is missing. How can I add this in? Thanks in advance, Timothy

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  • Pixel plot method errors out without error message.

    - by sonny5
    // The following method blows up (big red x on screen) without generating error info. Any // ideas why? // MyPlot.PlotPixel(x, y, Color.BlueViolet, Grf); // runs if commented out // My goal is to draw a pixel on a form. Is there a way to increase the pixel size also? using System; using System.Drawing; using System.Drawing.Drawing2D; using System.Collections; using System.ComponentModel; using System.Windows.Forms; using System.Data; public class Plot : System.Windows.Forms.Form { private Size _ClientArea; //keeps the pixels info private double _Xspan; private double _Yspan; public Plot() { InitializeComponent(); } public Size ClientArea { set { _ClientArea = value; } } private void InitializeComponent() { this.AutoScaleBaseSize = new System.Drawing.Size(5, 13); this.ClientSize = new System.Drawing.Size(400, 300); this.Text="World Plot (world_plot.cs)"; this.Resize += new System.EventHandler(this.Form1_Resize); this.Paint += new System.Windows.Forms.PaintEventHandler(this.doLine); this.Paint += new System.Windows.Forms.PaintEventHandler(this.TransformPoints); // new this.Paint += new System.Windows.Forms.PaintEventHandler(this.DrawRectangleFloat); this.Paint += new System.Windows.Forms.PaintEventHandler(this.DrawWindow_Paint); } private void DrawWindow_Paint(object sender, PaintEventArgs e) { Graphics Grf = e.Graphics; pixPlot(Grf); } static void Main() { Application.Run(new Plot()); } private void doLine(object sender, System.Windows.Forms.PaintEventArgs e) { // no transforms done yet!!! Graphics g = e.Graphics; g.FillRectangle(Brushes.White, this.ClientRectangle); Pen p = new Pen(Color.Black); g.DrawLine(p, 0, 0, 100, 100); // draw DOWN in y, which is positive since no matrix called p.Dispose(); } public void PlotPixel(double X, double Y, Color C, Graphics G) { Bitmap bm = new Bitmap(1, 1); bm.SetPixel(0, 0, C); G.DrawImageUnscaled(bm, TX(X), TY(Y)); } private int TX(double X) //transform real coordinates to pixels for the X-axis { double w; w = _ClientArea.Width / _Xspan * X + _ClientArea.Width / 2; return Convert.ToInt32(w); } private int TY(double Y) //transform real coordinates to pixels for the Y-axis { double w; w = _ClientArea.Height / _Yspan * Y + _ClientArea.Height / 2; return Convert.ToInt32(w); } private void pixPlot(Graphics Grf) { Plot MyPlot = new Plot(); double x = 12.0; double y = 10.0; MyPlot.ClientArea = this.ClientSize; Console.WriteLine("x = {0}", x); Console.WriteLine("y = {0}", y); //MyPlot.PlotPixel(x, y, Color.BlueViolet, Grf); // blows up } private void DrawRectangleFloat(object sender, PaintEventArgs e) { // Create pen. Pen penBlu = new Pen(Color.Blue, 2); // Create location and size of rectangle. float x = 0.0F; float y = 0.0F; float width = 200.0F; float height = 200.0F; // translate DOWN by 200 pixels // Draw rectangle to screen. e.Graphics.DrawRectangle(penBlu, x, y, width, height); } private void TransformPoints(object sender, System.Windows.Forms.PaintEventArgs e) { // after transforms Graphics g = this.CreateGraphics(); Pen penGrn = new Pen(Color.Green, 3); Matrix myMatrix2 = new Matrix(1, 0, 0, -1, 0, 0); // flip Y axis with -1 g.Transform = myMatrix2; g.TranslateTransform(0, 200, MatrixOrder.Append); // translate DOWN the same distance as the rectangle... // ...so this will put it at lower left corner g.DrawLine(penGrn, 0, 0, 100, 90); // notice that y 90 is going UP } private void Form1_Resize(object sender, System.EventArgs e) { Invalidate(); } }

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  • Mixing Matplotlib patches with polar plot?

    - by Roger
    I'm trying to plot some data in polar coordinates, but I don't want the standard ticks, labels, axes, etc. that you get with the Matplotlib polar() function. All I want is the raw plot and nothing else, as I'm handling everything with manually drawn patches and lines. Here are the options I've considered: 1) Drawing the data with polar(), hiding the superfluous stuff (with ax.axes.get_xaxis().set_visible(False), etc.) and then drawing my own axes (with Line2D, Circle, etc.). The problem is when I call polar() and subsequently add a Circle patch, it's drawn in polar coordinates and ends up looking like an infinity symbol. Also zooming doesn't seem to work with the polar() function. 2) Skip the polar() function and somehow make my own polar plot manually using Line2D. The problem is I don't know how to make Line2D draw in polar coordinates and haven't figured out how to use a transform to do that. Any idea how I should proceed?

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  • How do i plot a vertical axis with variable intervals (Flex Charts or any other)

    - by satish
    How do i plot a vertical axis with variable intervals? on a Flex Chart. I want to plot a data set that has values from 0.1 to 800. When I use a standard Numerical Axis, I have to define a interval. I tried using Log-Axis, but I am not sure how to plot the point values. Looks like something in lines of semi-log axis would be better. A axis with initial values in Numerical, but later shifting gears to a Log-Axis. Any ideas or pointers to implement this in Flex?

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  • plot only x and y axis (no box) in ggplot2

    - by Tyler Rinker
    The convention of some journals is to show only the x and y axis in a plot not a box around the entire plot area. How can I achieve this in ggplot2? I tried theme_minimal_cb_L from HERE but it seems to erase the entire box around the plot (does not leave the x and y axis) as seen here: Here's the code I'm using: dat <- structure(list(x = c(0.7, 0.75, 0.8, 0.85, 0.9, 0.95, 1, 1.05, 1.1, 1.15, 1.2, 1.25, 1.3), y1 = c(34, 30, 26, 23, 21, 19, 17, 16, 15, 13, 12, 12, 11), y2 = c(45, 39, 34, 31, 28, 25, 23, 21, 19, 17, 16, 15, 14)), .Names = c("x", "y1", "y2"), row.names = c(NA, -13L), class = "data.frame") library(reshape2); library(ggplot2) dat2 <- melt(dat, id='x') theme_minimal_cb_L <- function (base_size = 12, base_family = "", ...){ modifyList (theme_minimal (base_size = base_size, base_family = base_family), list (axis.line = element_line (colour = "black"))) } ggplot(data=dat2, aes(x=x, y=value, color=variable)) + geom_point(size=3) + geom_line(size=.5) + theme_minimal_cb_L()

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  • matplotlib 3D plot with PyQt4 in Qtabwidget (mplwidget)

    - by artdijk
    I am working on my first Python app using PythonXY (2.6 and Qt4). I have a window with some buttons and a QtabWidget. When I press a button I want to plot a 3D image on a specific tab. I managed to get a 2D plot but I can't get the axes to 3D. Via Qt desiger I use the mplwidget. In many examples I see the use of figure(), but I can't get that to work with the mplwidget. (I am not sure if that is even possible) Can you please show me an example of code defining the 3D axes (in a QtabWidget) with a simple plot ? Thanks very much

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  • Howto plot two cumulative frequency graph together

    - by neversaint
    I have data that looks like this: #val Freq1 Freq2 0.000 178 202 0.001 4611 5300 0.002 99 112 0.003 26 30 0.004 17 20 0.005 15 20 0.006 11 14 0.007 11 13 0.008 13 13 ...many more lines.. Full data can be found here: http://dpaste.com/173536/plain/ What I intend to do is to have a cumulative graph with "val" as x-axis with "Freq1" & "Freq2" as y-axis, plot together in 1 graph. I have this code. But it creates two plots instead of 1. dat <- read.table("stat.txt",header=F); val<-dat$V1 freq1<-dat$V2 freq2<-dat$V3 valf1<-rep(val,freq1) valf2<-rep(val,freq2) valfreq1table<- table(valf1) valfreq2table<- table(valf2) cumfreq1=c(0,cumsum(valfreq1table)) cumfreq2=c(0,cumsum(valfreq2table)) plot(cumfreq1, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq1) plot(cumfreq2, ylab="CumFreq",xlab="Loglik Ratio") lines(cumfreq2) What's the right way to approach this?

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  • matplotlib.pyplot/pylab not updating figure while isinteractive(), using ipython -pylab

    - by NumberOverZero
    There are a lot of questions about matplotlib, pylab, pyplot, ipython, so I'm sorry if you're sick of seeing this asked. I'll try to be as specific as I can, because I've been looking through people's questions and looking at documentation for pyplot and pylab, and I still am not sure what I'm doing wrong. On with the code: Goal: plot a figure every .5 seconds, and update the figure as soon as the plot command is called. My attempt at coding this follows (running on ipython -pylab): import time ion() x=linspace(-1,1,51) plot(sin(x)) for i in range(10): plot([sin(i+j) for j in x]) #see ** print i time.sleep(1) print 'Done' It correctly plots each line, but not until it has exited the for loop. I have tried forcing a redraw by putting draw() where ** is, but that doesn't seem to work either. Ideally, I'd like to have it simply add each line, instead of doing a full redraw. If redrawing is required however, that's fine. Additional attempts at solving: just after ion(), tried adding hold(True) to no avail. for kicks tried show() for ** The closest answer I've found to what I'm trying to do was at http://stackoverflow.com/questions/2310851/plotting-lines-without-blocking-execution, but show() isn't doing anything. I apologize if this is a straightforward request, and I'm looking past something so obvious. For what it's worth, this came up while I was trying to convert matlab code from class to some python for my own use. The original matlab (initializations removed) which I have been trying to convert follows: for i=1:time plot(u) hold on pause(.01) for j=2:n-1 v(j)=u(j)-2*u(j-1) end v(1)= pi u=v end Any help, even if it's just "look up this_method" would be excellent, so I can at least narrow my efforts to figuring out how to use that method. If there's any more information that would be useful, let me know.

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  • MATLAB fill area between lines

    - by dustynrobots
    I'm trying to do something similar to what's outlined in this post: MATLAB, Filling in the area between two sets of data, lines in one figure but running into a roadblock. I'm trying to shade the area of a graph that represents the mean +/- standard deviation. The variable definitions are a bit complicated but it boils down to this code, and when plotted without shading, I get the screenshot below: x = linspace(0, 100, 101)'; mean = torqueRnormMean(:,1); meanPlusSTD = torqueRnormMean(:,1) + torqueRnormStd(:,1); meanMinusSTD = torqueRnormMean(:,1) - torqueRnormStd(:,1); plot(x, mean, 'k', 'LineWidth', 2) plot(x, meanPlusSTD, 'k--') plot(x, meanMinusSTD, 'k--') But when I try to implement shading just on the lower half of the graph (between mean and meanMinusSTD) by adding the code below, I get a plot that looks like this: fill( [x fliplr(x)], [mean fliplr(meanMinusSTD)], 'y', 'LineStyle','--'); It's obviously not shading the correct area of the graph, and new near-horizontal lines are being created close to 0 that are messing with the shading. Any thoughts? I'm stumped.

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  • Strange Matlab error: "??? Subscript indices must either be real positive integers or logicals"

    - by Roee Adler
    I have a function func that returns a vector a. I usually plot a and then perform further analysis on it. I have a certain scenario when once I try to plot a, I get a "??? Subscript indices must either be real positive integers or logicals" error. Take a look at the following piece of code to see the vector's behavior: K>> a a = 5.7047 6.3529 6.4826 5.5750 4.1488 5.8343 5.3157 5.4454 K>> plot(a) ??? Subscript indices must either be real positive integers or logicals. K>> for i=1:length(a); b(i) = a(i); end; K>> b b = 5.7047 6.3529 6.4826 5.5750 4.1488 5.8343 5.3157 5.4454 K>> plot(b) ??? Subscript indices must either be real positive integers or logicals. The scenario where this happens is when I call function func from within another function (call it outer_func), and return the result directly as outer_func's result. When debugging inside outer_func, I can plot a properly, but outside the scope of outer_func, its result has the above behavior. What can cause this? Where do I start from?

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  • Calculate area under FFT graph in Matlab

    - by lytheone
    Hiya, Currently I did a FFT of a set of data which gives me a plot with frequency at x axis and amplitude at y axis. I would like to calculate out the area under graph to give me energy. I am not sure how to determinate the area because i am without the equation and also i only want a certain area of the plot rather than whole area under the plot. Is there a way i can do it?

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  • Plotting a grouped 2 dimensional vector in MATLAB

    - by Hossein
    I am trying to make a plot of a 2-dimensional vector (2D Plot). But I don't want all the datapoints to have the same color on the plot. Each datapoint corresponds to a group. I want to have different colors for each group of datapoints. class=[1 3 2 5 2 5 1 3 3 4 2 2 2] says each datapoint belongs to which group X=[x1,y1;x2,y2;x3,y3;.....] the number of these datapoints are the same as the number of elements in the class vector. Now I want to plot these based on colors.

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  • Plotting a grouped 2 dimensional vevtor in MATLAB

    - by Hossein
    Hi, I am trying to make a plot of a 2-Dimensional vector(2D Plot).But I don't want all the datapoints to have the same color on the plot.Each datapoint corresponds to a group.I want to have different colors for each group of datapoints. class=[1 3 2 5 2 5 1 3 3 4 2 2 2] says each datapoint belongs to which group X=[x1,y1;x2,y2;x3,y3;.....] the number of thes datapoints are the same as the number of elements in th class vector. Now I want to plot these based on colors. Can someone help me? Thanks

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  • Plot numpy datetime64 with matplotlib

    - by enedene
    I have two numpy arrays 1D, one is time of measurement in datetime64 format, for example: array([2011-11-15 01:08:11, 2011-11-16 02:08:04, ..., 2012-07-07 11:08:00], dtype=datetime64[us]) and other array of same length and dimension with integer data. I'd like to make a plot in matplotlib time vs data. If I put the data directly, this is what I get: plot(timeSeries, data) Is there a way to get time in more natural units? For example in this case months/year would be fine.

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  • R: How to plot data grouped by a factor, but not as a boxplot

    - by amarillion
    In R, given a vector casp6 <- c(0.9478638, 0.7477657, 0.9742675, 0.9008372, 0.4873001, 0.5097587, 0.6476510, 0.4552577, 0.5578296, 0.5728478, 0.1927945, 0.2624068, 0.2732615) and a factor: trans.factor <- factor (rep (c("t0", "t12", "t24", "t72"), c(4,3,3,3))) I want to create a plot where the data points are grouped as defined by the factor. So the categories should be on the x-axis, values in the same category should have the same x coordinate. Simply doing plot(trans.factor, casp6) does almost what I want, it produces a boxplot, but I want to see the individual data points.

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  • R: How to plot a vector, grouped by a factor

    - by amarillion
    In R, given a vector casp6 <- c(0.9478638, 0.7477657, 0.9742675, 0.9008372, 0.4873001, 0.5097587, 0.6476510, 0.4552577, 0.5578296, 0.5728478, 0.1927945, 0.2624068, 0.2732615) and a factor: trans.factor <- factor (rep (c("t0", "t12", "t24", "t72"), c(4,3,3,3))) I want to create a plot where the data points are grouped as defined by the factor. So the categories should be on the x-axis, values in the same category should have the same x coordinate. Simply doing plot(trans.factor, casp6) does almost what I want, it produces a boxplot, but I want to see the individual data points.

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  • How to present a plot and then return to cmd prompt

    - by ldigas
    I have a data file, and a gnu file, in which my plotting commands are. How can I produce a plot in gnuplot, in a way that I call gnuplot giving it a name of the gnu file ... it gives me the window with a plot ... and after I close it, it returns me not to gnuplot command prompt, but to cmd (windows cmd.exe) command prompt ?

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  • Artichow PlotGroup: Legends not showing

    - by Hameed
    I am working on a little project on OpenCATS, developing some charts. In one of the charts, I need to add multiple plots to a PlotGroup and add Legends as well. I have written a small function that creates the chart, however I have difficulty displaying the legends when I add them to a PlotGroup object. Here is the code: public function draw($format = false) { /* Make sure we have GD support. */ if (!function_exists('imagecreatefromjpeg')) { die(); } if ($format === false) { $format = IMG_PNG; } $group = new PlotGroup(); $graph = new Graph($this->width, $this->height, NULL, 0, $this->width-135); $graph->setFormat($format); $graph->setBackgroundColor(new Color(0xF4, 0xF4, 0xF4)); $graph->shadow->setSize(3); $graph->title->set($this->title); $graph->title->setFont(new Tuffy(10)); $graph->title->setColor(new Color(0x00, 0x00, 0x8B)); $graph->border->setColor(new Color(187, 187, 187, 15)); $group->axis->bottom->setLabelText($this->xLabels); $group->axis->bottom->label->setFont(new Tuffy(8)); $group->setPadding(25, 145, 10, 22); $plotcount = 0; $plot = array(); foreach ($this->xValues as $xVal) { $plotcount++; $plot[$plotcount-1] = new LinePlot($xVal, LinePlot::LINE); $plot[$plotcount-1]->setPadding(25, 145, 10, 22); if ($plotcount % 5 ==0 ) $plot[$plotcount-1]->setColor(new Blue); else if ($plotcount % 4 ==0 ) $plot[$plotcount-1]->setColor(new DarkGreen); else if ($plotcount % 3 ==0 ) $plot[$plotcount-1]->setColor(new Red); else if ($plotcount % 2 ==0 ) $plot[$plotcount-1]->setColor(new Orange); $plot[$plotcount-1]->setThickness(2); $plot[$plotcount-1]->legend->add($plot[$plotcount-1], $this->legends[$plotcount-1]); $plot[$plotcount-1]->legend->setTextFont(new Tuffy(8)); $plot[$plotcount-1]->legend->setPadding(3, 3, 3, 3, 3); $plot[$plotcount-1]->legend->setPosition(1, 0.825); $plot[$plotcount-1]->legend->setBackgroundColor(new Color(0xFF, 0xFF, 0xFF)); $plot[$plotcount-1]->legend->border->setColor(new Color(0xD0, 0xD0, 0xD0)); $plot[$plotcount-1]->legend->shadow->setSize(0); $group->add($plot[$plotcount-1]); } $graph->add($group); $graph->draw(); } } If I draw only one LinePlot it works: So for instance if I change $graph->add($group); to $graph->add($plot[0]); then only one of the lines will show up with the legend next to it.

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  • Plotting andrews curves of subsets of a data frame on the same plot

    - by user2976477
    I have a data frame of 12 columns and I want to plot andrews curves in R of this data, basing the color of the curves on the 12th columns. Below are a few samples from the data (sorry the columns are not aligned with the numbers) Teacher_explaining Teacher_enthusiastic Teacher_material_interesting Material_stimulating Material_useful Clear_marking Marking_fair Feedback_prompt Feedback_clarifies Detailed_comments Notes Year 80 80 80 80 85 85 80 80 80 80 70 3 70 60 30 40 70 60 30 40 70 0 30 3 100 90 90 80 80 100 100 90 100 100 100 MSc 85 85 85 90 90 70 90 50 70 80 100 MSc 90 50 90 90 90 70 100 50 80 100 100 4 100 80 80 75 90 80 80 50 80 80 90 3 From this data I tried to plot andrews curves using the code below: install.packages("andrews") library(andrews) col <- as.numeric(factor(course[,12])) andrews(course[,1:12], clr = 12) However, the 12th column has three groups (3 types of responses) and I want to group two of them and then plot the andrews curve of the data, without editing my data frame in Excel. x <- subset(course, Year == "MSc" & "4") y <- subset(course, Year == "3") I tried the above code, but my argument for x don't work. "MSc", "3" and "4" are the groups in the 12th column, and I want to group MSc and 4 so that their Andrews curves have the same color. If you have any idea how to do this, please let me know.

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  • ploting 3d graph in matlab?

    - by lytheone
    Hello, I am currently a begineer, and i am using matlab to do a data analysis. I have a a text file with data at the first row is formatted as follow: time;wave height 1;wave height 2;....... I have column until wave height 19 and rows total 4000 rows. Data in the first column is time in second. From 2nd column onwards, it is wave height elevation which is in meter. At the moment I like to ask matlab to plot a 3d graph with time on the x axis, wave elevation on the y axis, and wave elevation that correspond to wave height number from 1 to 19, i.e. data in column 2 row 10 has a let say 8m which is correspond to wave height 1 and time at the column 1 row 10. I have try the following: clear; filename='abc.daf'; path='C:\D'; a=dlmread([path '\' filename],' ', 2, 1); [nrows,ncols]=size(a); t=a(1:nrows,1);%define t from text file for i=(1:20), j=(2:21); end wi=a(:,j); for k=(2:4000), l=k; end r=a(l,:); But everytime i use try to plot them, the for loop wi works fine, but for r=a(l,:);, the plot only either give me the last time data only but i want all data in the file to be plot. Is there a way i can do that. I am sorry as it is a bit confusing but i will be very thankful if anyone can help me out. Thank you!!!!!!!!!!

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  • Matlab set defaultTextInterpreter to LaTeX

    - by Maurits
    I am running Matlab R2010A on OS X 10.7.5 I have a simple matlab plot and would like to use LaTeX commands in the axis and legend. However setting: set(0, 'defaultTextInterpreter', 'latex'); Has zero effect, and results in a TeX warning that my tex commands can not be parsed. If I open plot tools of this plot, the default interpreter is set to 'TeX'. Manually setting this to 'LaTeX' obviously fixes this, but I can't do this for hundreds of plots. Now, if I retrieve the default interpreter via the Matlab prompt, i.e get(0,'DefaultTextInterpreter') It says 'LaTeX', but again, when I look in the properties of the figure via the plot tools menu, the interpreter remains set to 'TeX'. Complete plotting code: figure f = 'somefile.eps' set(0, 'defaultTextInterpreter', 'latex'); ms = 8; fontSize = 18; loglog(p_m_sip, p_fa_sip, 'ko-.', 'LineWidth', 2, 'MarkerSize', ms); hold on; xlabel('$P_{fa}$', 'fontsize', fontSize); ylabel('$P_{m}$', 'fontsize', fontSize); legend('$\textbf{K}_{zz}$', 'Location', 'Best'); set(gca, 'XMinorTick', 'on', 'YMinorTick', 'on', 'YGrid', 'on', 'XGrid', 'on'); print('-depsc2', f);

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  • missing plot title in ggplot2

    - by Ben Mazzotta
    How can I create a plot title in ggplot2? Am I making a silly syntax error? The ggplot2 docs indicate that labs(title = 'foo') should work, but I can only get the arguments x='foo' and y='foo' to work with labs(). Neither ggtitle() nor title() worked either. Here is an example. x <- rnorm(10,10,1) y <- rnorm(10,20,2) xy.df <- data.frame(x,y) qplot(x,y, data=xy.df, geom='point', color=x*y) + labs(title = "New Plot Title", x='Some Data', y='Some Other Data')

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