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  • How to display a flyout menu on clicking an image in Grid header in MVC?

    - by Vincent
    A grid is displayed using the following code in MVC. <%= this.Grid( "routes-" + mc , "Testing", Model.Routes, new GridBuilder<RouteModel>() .Column( "chk", () => Html.Image( Url.Content( "down.gif" ), "Select or deselect tests" ), (m) => "<input type='hidden' name='routeLinkId' value='"+ m.RouteLinkID +"' />" + Html.CheckBox( "drugRoute" + mc + m.RouteLinkID, m.IsChecked ) ) .Column( "route clip-text", "Route", (m) = Html.Encode( m.Route ) ) .Column( "groups clip-text", "Groups", (m) = "" + Html.Encode(m.Group) + "" ) .ToGrid() ) % On clicking the image in header I need to display a flyout menu. The code for the flyout menu is below. <div id="group-menu-<%= mc %>" class="flyout-menu" title="Select tests"> <div> <p>Select</p> <ul> <li><button type="button" name="one">One</button></li> <li><button type="button" name="two">two</button></li> </ul> <p>Unselect</p> <ul> <li><button type="button" name="unselect-one">one</button></li> <li><button type="button" name="unselect-two">two</button></li> </ul> </div> </div> Now how do I display this menu on clicking the image in header.

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  • JPA Entity (in multiple persistence-unit) in OSGi (Spring DM) Environnement is confusing me.

    - by Vincent Demeester
    Hi, I'm a bit confused about a strange behavior of my JPA's related objects. I have three bundle : The User bundle does contain some user-related objects, but mainly the User object. The Energy bundle does contain some energy-related objects, and particularly a ConsumptionTerminal which contains a List of User. The Index bundle does contain an Index object that has no dependency at all. My OSGi environment is the following : A DataSource bundle that provide 2 services : dataSource and jpaVendorAdapter. The three bundles. They consume dataSource and jpaVendorAdapter. Their module-context.xml file look like : And they all have a persistence.xml file : User <?xml version="1.0" encoding="UTF-8"?> <persistence> <persistence-unit name="securityPU" transaction-type="JTA"> <jta-data-source>java:/securityDataSourceService</jta-data-source> <class>net.nextep.amundsen.security.domain.User</class> <!-- [...] --> <exclude-unlisted-classes>true</exclude-unlisted-classes> <properties> <property name="eclipselink.logging.level" value="INFO" /> <property name="eclipselink.ddl-generation" value="create-tables" /> <property name="eclipselink.ddl-generation.output-mode" value="database" /> <property name="eclipselink.orm.throw.exceptions" value="true" /> </properties> </persistence-unit> </persistence> Energy <?xml version="1.0" encoding="UTF-8"?> <persistence> <persistence-unit name="energyPU" transaction-type="JTA"> <jta-data-source>java:/securityDataSourceService</jta-data-source> <class>net.nextep.amundsen.security.domain.User</class> <class>net.nextep.amundsen.energy.domain.User</class> <!-- [...] --> <exclude-unlisted-classes>true</exclude-unlisted-classes> <properties> <property name="eclipselink.logging.level" value="INFO" /> <property name="eclipselink.ddl-generation" value="create-tables" /> <property name="eclipselink.ddl-generation.output-mode" value="database" /> <property name="eclipselink.orm.throw.exceptions" value="true" /> </properties> </persistence-unit> </persistence> Index : This one has the most simple persistence.xml with just the Index class (no shared Class). I'm using named @PersistenceUnit annotation like @PersitenceUnit(name = 'securityPU') (for the User bundle). And finally, I'm using EclipseLink as Jpa provider and Spring DM (+ Spring DM Server in the development process) The problem is the following : When the User bundle is deployed, I'm able to persist User objects. When the User bundle and Energy bundles are both deployed, I'm not able to persist User objects (neither the Energy object). But I don't have any exception at all ! There is no problem at all with the Index bundle. The bug is dataSource independent (I tried with PostgreSQL and MySQL so far). My first conclusion was that the <class>net.nextep.amundsen.security.domain.User</class> in both persistence unit was causing the trouble. I tried without it (and hiding the User dependent object in the Energy bundle) but it failed too. I'm a bit confused about that bug. I'm also not quite sure about the transaction management in this context. I wasn't the one who designed this architecture (but I tell my intern OK without testing it.. shame on me) but if I could understand this bug and maybe fix it without rewrite the bundle (and break my intern work), I would appreciate. Am I doing something wrong ? (it's obvious, but what..) Did I miss something while reading documentation ? By the way, I'm also looking for some best practices or advices when it comes to JPA, EclipseLink (or whatever JPA Provider) and Spring DM (and OSGi in general). I found interesting slides from Mike Keith about this topic (by browsing Stackoverflow).

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  • powershell / runspace in a thread

    - by Vincent
    Hello ! I'm running the following code : RunspaceConfiguration config = RunspaceConfiguration.Create(); PSSnapInException warning; config.AddPSSnapIn("Microsoft.Exchange.Management.PowerShell.Admin", out warning); if (warning != null) throw warning; Runspace thisRunspace = RunspaceFactory.CreateRunspace(config); thisRunspace.Open(); string alias = usr.AD.CN.Replace(' ', '.'); string letter = usr.AD.CN.Substring(0, 1); string email = alias + "@" + (!usr.Mdph ? Constantes.AD_DOMAIN : Constantes.MDPH_DOMAIN) + "." + Constantes.AD_LANG; string db = "CN=IS-" + letter + ",CN=SG-" + letter + ",CN=InformationStore,CN=" + ((char)letter.ToCharArray()[0] < 'K' ? Constantes.EXC_SRVC : Constantes.EXC_SRVD) + Constantes.EXC_DBMEL; string cmd = "Enable-Mailbox -Identity \"" + usr.AD.CN + "\" -Alias " + alias + " -PrimarySmtpAddress " + email + " -DisplayName \"" + usr.AD.CN + "\" -Database \"" + db + "\""; Pipeline thisPipeline = thisRunspace.CreatePipeline(cmd); thisPipeline.Invoke(); The code is running in a thread created that way : t.WorkThread = new Thread(cu.CreerUser); t.WorkThread.Start(); If I run the code directly (not through a thread), it's working. When in a thread it throws the following exception : ObjectDisposedException "The safe handle has been closed." (Translated from french) I then replaced "Open" wirh "OpenAsync" which helped not getting the previous exception. But when on Invoke I get the following exception : InvalidRunspaceStateException "Unable to call the pipeline because its state of execution is not Opened. Its current state is Opening." (Also translated from french) I'm clueless... Any help welcome !!! Thanks !!!

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  • Get ListView Visible items

    - by Vincent Piel
    I have a ListView which might contains a lot of items, so it is virtualized and recycling items. It does not use sort. I need to refresh some value display, but when there are too many items, it is too slow to update everything, so I would like to refresh only the visible items. How could I get a list of all currently displayed items ? I tried to look into the ListView or in the ScrollViewer, but I still have no idea how to achieve this. The solution must NOT go through all items to test if they can be seen, because this would be too slow. I'm not sure code or xaml would be usefull, it is just a Virtualized/Recycling ListView with its ItemSource bound to an Array. Edit Answer : thanks to akjoshi, i found the way : get the ScrollViewer of the ListView (with a FindDescendant method, that you can do yourself with the VisualTreeHelper ). Then use its ScrollViewer.VerticalOffset : it is the number of the first item shown and ScrollViewer.ViewportHeight : it is the count of items shown. Rq : CanContentScroll must be true.

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  • Browser Detection and Zend MVC

    - by Vincent
    I have a PHP application using Zend MVC framework. The entry point for every request to the application is in /public/index.php. I have a Browser class that has functions to check if the user's browser is compatible with application or not. My dilemma is, index.php is executed for every controller call. So there are chances that this file gets executed multiple times within the same page and hence redirection becomes an issue. What's the best way to solve the looping issue? Thanks

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  • Update JQuery Progressbar with JSON Response in an ajax Request

    - by Vincent
    All, I have an AJAX request, which makes a JSON request to a server, to get the sync status. The JSON Request and responses are as under: I want to display a JQuery UI progressbar and update the progressbar status, as per the percentage returned in the getStatus JSON response. If the status is "insync", then the progressbar should not appear and a message should be displayed instead. Ex: "Server is in Sync". How can I do this? //JSON Request to getStatus { "header": { "type": "request" }, "payload": [ { "data": null, "header": { "action": "load", } } ] } //JSON Response of getStatus (When status not 100%) { "header": { "type": "response", "result": 400 }, "payload": [ { "header": { "result": 400 }, "data": { "status": "pending", "percent": 20 } } ] } //JSON Response of getStatus (When percent is 100%) { "header": { "type": "response", "result": 400 }, "payload": [ { "header": { "result": 400 }, "data": { "status": "insync" } } ] }

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  • PHP 5.3 SOAP deprecated errors

    - by Vincent
    All, I am using PHP 5.3.1 under Ubuntu and using the SOAP package. I am getting the following errors when I include SOAP/Client.php. Any one knows how to get this working? Thanks Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/SOAP/WSDL.php on line 214 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/SOAP/WSDL.php on line 791 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/SOAP/WSDL.php on line 1159 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/SOAP/WSDL.php on line 1685 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/HTTP/Request.php on line 228 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/HTTP/Request.php on line 324 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/HTTP/Request.php on line 602 Deprecated: Assigning the return value of new by reference is deprecated in /opt/lampp/lib/php/HTTP/Request.php on line 621 Strict Standards: Redefining already defined constructor for class Net_URL in /opt/lampp/lib/php/Net/URL.php on line 122

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  • Using Zend_HTTP_Client instead of CURL

    - by Vincent
    All, I want to use Zend_HTTP_CLient instead of CURL as there are issues with using curl on Solaris. I have the following curl code.. How will this code be written if I want to use Zend_HTTP_Client? $ch = curl_init(); $devnull = fopen('/tmp/cookie.txt', 'w'); curl_setopt($ch, CURLOPT_STDERR, $devnull); curl_setopt($ch, CURLOPT_POST, 1); curl_setopt($ch, CURLOPT_URL, $desturl); curl_setopt($ch, CURLOPT_RETURNTRANSFER, 1); curl_setopt($ch, CURLOPT_SSL_VERIFYPEER, false); curl_setopt($ch, CURLOPT_SSL_VERIFYHOST, false); curl_setopt($ch, CURLOPT_HEADER, false); curl_setopt($ch, CURLOPT_FOLLOWLOCATION, 0); curl_setopt($ch, CURLOPT_CONNECTTIMEOUT,800); curl_setopt($ch, CURLOPT_AUTOREFERER, true); curl_setopt($ch, CURLOPT_ENCODING, 'gzip,deflate'); curl_setopt($ch, CURLOPT_POSTFIELDS, $postdata); $retVal = curl_exec($ch); print_r(curl_error($ch)); curl_close($ch); if ($devnull) { fclose($devnull); } Thanks

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  • Android: Dialog themed activity not visible

    - by Vincent
    I have an activity which, when started, needs to check if the user is authenticated. If not, I need to display an interface to authenticate. I do this with another activity, which has a dialog theme, and I start it in onResume() with flags NO_HISTORY and EXCLUDE_FROM_RECENTS. Everything works fine when starting the application for the first time. But I have a feature that resets login after some time, if the user is not in an activity. When I test this, I start the applicatio, enter the password, then move back to home. Then when I enter the application again, the background darkens as if the dialog would show, but it doesn't. At this point, if I press the back button, the darkening from the background activity disappears for a second, then the dialog finally appears. I used logcat to investigate the case, and the activity lifecycle functions get called properly: //For the first start: onCreate background activity onStart background activity onResume background activity onPause background activity onCreate dialog onStart dialog onResume dialog //Enter password onPause dialog onResume background activity onStop dialog onDestroy dialog //navigating to homescreen onPause background activity onStop background activity //starting again onRestart background activity onStart background activity onResume background activity onPause background activity onCreate dialog onStart dialog onResume dialog //no dialog shown, only darkened background activity recieving no input //pressing back button onPause dialog onResume background activity onPause background activity onCreate NEW dialog onStart NEW dialog onResume NEW dialog onStop OLD dialog onDestroy OLD dialog //now the dialog is properly shown //entering password onPause NEW dialog onResume background activity onStop NEW dialog onDestroy NEW dialog Using the SINGLE_TOP flag makes no change. However, if I remove the dialog theme from the dialog activity, it IS shown after the restart. So far I didn't want to use a Dialog instead of an Activity, because I consider them problematic sometimes and less encapsulated and this part has to be quite secure. You may be able to convince me though.. Thank you in advance!

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  • PHP Browser Detection and Redirection

    - by Vincent
    All, My application supports IE7+, MOZILLA and other modern browsers. Anybody know of a very good browser detection and redirection PHP class? I came across this, but I am not sure if anybody used this: http://chrisschuld.com/projects/browser-php-detecting-a-users-browser-from-php/#typicalusage Thanks

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  • UVA #10410 Tree Reconstruction

    - by Vincent
    I have worked on UVA 10410 Tree Reconstruction several days. But I can't get the correct answer unitl now. I have used an algorithm similar to the one which we always use to recovery a binary tree through the preorder traversal and the inorder traversal. But it can't work. Can anyone help me? Thanks in advance.

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  • Zend Server with xampp MySQL

    - by Vincent
    I am running Zend Server,Zend Studio (Trial versions) on Ubuntu 9.10. I am also using xampp to do most of my development. I plan to use Zend Server only to do URL profiling to know function level performance of my code. Is it possible to configure Zend Server to use XAMPP's MySQL database instead of installing a new mysql instance for Zend Server? Thanks

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  • Zend DB MYSQL Wrapper

    - by Vincent
    All, I have a PHP application written in Zend Framework with MVC style. I plan to use Zend_DB to connect to the MySQL database and process queries. I am looking for a wrapper class which makes it easy to use Zend_DB class. This wrapper class will have a constructor that connects to the Mysql db using Zend_DB. It will also have a method to return a singleton instance for each and every db connection made. Something like: $pptDB = PPTDB::getInstance(); $pptDB->setFetchMode(PPTDB::FETCH_OBJ); $result = $pptDB->fetchRow('SELECT * FROM bugs WHERE bug_id = 2'); echo $result->bug_description; Where class PPTDB extends Zend_DB Is this something feasible to have? If not, how ls would you use Zend_DB in a major application? Thanks,

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  • CURL - HTTPS Wierd error

    - by Vincent
    All, I am having trouble requesting info from HTTPS site using CURL and PHP. I am using Solaris 10. It so happens that sometimes it works and sometimes it doesn't. I am not sure what is the cause. If it doesn't work, this is the entry recorded in the verbose log: * About to connect() to 10.10.101.12 port 443 (#0) * Trying 10.10.101.12... * connected * Connected to 10.10.101.12 (10.10.101.12) port 443 (#0) * error setting certificate verify locations, continuing anyway: * CAfile: /etc/opt/webstack/curl/curlCA CApath: none * error:80089077:lib(128):func(137):reason(119) * Closing connection #0 If it works, this is the entry recorded in the verbose log: * About to connect() to 10.10.101.12 port 443 (#0) * Trying 10.10.101.12... * connected * Connected to 10.10.101.12 (10.10.101.12) port 443 (#0) * error setting certificate verify locations, continuing anyway: * CAfile: /etc/opt/webstack/curl/curlCA CApath: none * SSL connection using DHE-RSA-AES256-SHA * Server certificate: * subject: C=CA, ST=British Columnbia, L=Vancouver, O=google, OU=FDN, CN=g.googlenet.com, [email protected] * start date: 2007-07-24 23:06:32 GMT * expire date: 2027-09-07 23:06:32 GMT * issuer: C=US, ST=California, L=Sunnyvale, O=Google, OU=Certificate Authority, CN=support, [email protected] * SSL certificate verify result: unable to get local issuer certificate (20), continuing anyway. > POST /gportal/gpmgr HTTP/1.1^M Host: 10.10.101.12^M Accept: */*^M Accept-Encoding: gzip,deflate^M Content-Length: 1623^M Content-Type: application/x-www-form-urlencoded^M Expect: 100-continue^M ^M < HTTP/1.1 100 Continue^M < HTTP/1.1 200 OK^M < Date: Wed, 28 Apr 2010 21:56:15 GMT^M < Server: Apache^M < Cache-Control: no-cache^M < Pragma: no-cache^M < Vary: Accept-Encoding^M < Content-Encoding: gzip^M < Content-Length: 1453^M < Content-Type: application/json^M < ^M * Connection #0 to host 10.10.101.12 left intact * Closing connection #0 My CURL options are as under: $ch = curl_init(); $devnull = fopen('/tmp/curlcookie.txt', 'w'); $fp_err = fopen('/tmp/verbose_file.txt', 'ab+'); fwrite($fp_err, date('Y-m-d H:i:s')."\n\n"); curl_setopt($ch, CURLOPT_STDERR, $devnull); curl_setopt($ch, CURLOPT_POST, 1); curl_setopt($ch, CURLOPT_URL, $desturl); curl_setopt($ch, CURLOPT_RETURNTRANSFER, 1); curl_setopt($ch, CURLOPT_SSL_VERIFYPEER, false); curl_setopt($ch, CURLOPT_SSL_VERIFYHOST, false); curl_setopt($ch, CURLOPT_HEADER, false); curl_setopt($ch, CURLOPT_FOLLOWLOCATION, 0); curl_setopt($ch, CURLOPT_CONNECTTIMEOUT,120); curl_setopt($ch, CURLOPT_AUTOREFERER, true); curl_setopt($ch, CURLOPT_ENCODING, 'gzip,deflate'); curl_setopt($ch, CURLOPT_POSTFIELDS, $postdata); curl_setopt($ch, CURLOPT_VERBOSE,1); curl_setopt($ch, CURLOPT_FAILONERROR, true); curl_setopt($ch, CURLOPT_STDERR, $fp_err); $ret = curl_exec($ch); Anybody has any idea, why it works sometimes but fails mostly? Thanks

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  • CURL - https - solaris

    - by Vincent
    All, I am receiving the following error when I use PHP to curl to a https site. Both PHP and the https site are hosted on Solaris. This error seems to occur occassionally but frequently. error:80089077:lib(128):func(137):reason(119) This is the curl code I am using: $ch = curl_init(); $devnull = fopen('/tmp/cookie.txt', 'w'); curl_setopt($ch, CURLOPT_STDERR, $devnull); curl_setopt($ch, CURLOPT_POST, 1); curl_setopt($ch, CURLOPT_URL, $desturl); curl_setopt($ch, CURLOPT_RETURNTRANSFER, 1); curl_setopt($ch, CURLOPT_SSL_VERIFYPEER, false); curl_setopt($ch, CURLOPT_SSL_VERIFYHOST, false); curl_setopt($ch, CURLOPT_HEADER, false); curl_setopt($ch, CURLOPT_FOLLOWLOCATION, 0); curl_setopt($ch, CURLOPT_CONNECTTIMEOUT,800); curl_setopt($ch, CURLOPT_AUTOREFERER, true); curl_setopt($ch, CURLOPT_ENCODING, 'gzip,deflate'); curl_setopt($ch, CURLOPT_POSTFIELDS, $postdata); $retVal = curl_exec($ch); print_r(curl_error($ch)); curl_close($ch); if ($devnull) { fclose($devnull); } How can I fix this error? If not, is there an alternative to curl?

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  • Solve the IE select overlap bug

    - by Vincent Robert
    When using IE, you cannot put an absolutely positioned div over a select input element. That's because the select element is considered an ActiveX object and is on top of every HTML element in the page. I already saw people hiding selects when opening a popup div, that leads to pretty bad user experience having controls disappearing. FogBugz actually had a pretty smart solution (before v6) of turning every select into text boxes when a popup was displayed. This solved the bug and tricked the user eye but the behavior was not perfect. Another solution is in FogBugz 6 where they no more use the select element and recoded it everywhere. Last solution I currently use is messing up the IE rendering engine and force it to render the absolutely positioned div as an ActiveX element too, ensuring it can live over a select element. This is achieved by placing an invisible iframe inside the div and styling it with: #MyDiv iframe { position: absolute; z-index: -1; filter: mask(); border: 0; margin: 0; padding: 0; top: 0; left: 0; width: 9999px; height: 9999px; overflow: hidden; } Anyone has a even better solution than this one ? EDIT: The purpose of this question is as much informative as it is a real question. I find the iframe trick to be a good solution but I am still looking for improvement like removing this ugly useless iframe tag that degrade accessibility.

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  • Jquery - Loop through Checkboxes and Multiple elements

    - by Vincent
    All, I have a set of elements like this in a form: <input type="checkbox" name="chk[140]"> <input type="hidden" value="3" name="ctcount[140]"> <input type="hidden" value="Apples" name="catname[140]"> <input type="checkbox" name="chk[142]"> <input type="hidden" value="20" name="ctcount[142]"> <input type="hidden" value="Bananas" name="catname[142]"> <input type="checkbox" name="chk[144]"> <input type="hidden" value="200" name="ctcount[144]"> <input type="hidden" value="Strawberries" name="catname[144]"> <input type="checkbox" name="chk[145]"> <input type="hidden" value="0" name="ctcount[145]"> <input type="hidden" value="Carrots" name="catname[145]"> When a user clicks a button, I want the Javascript to: 1. Loop through all the checkboxes 2. For all the checked checkboxes, 2a. Get ctcount value 2b. Get catname value 2c. If ctcount value > 50, alert a message saying "Unable to add item as max limit for 'catname' has reached. 2d. Break the loop after it encountered first ctcount value that is greater than 50. I am new to JQuery..have the following code so far: var checklimit = 50; $('#frmTest input:checkbox:checked').each(function(i) { alert(this.value); }); How do I do this using JQuery? Thanks

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  • Zend_Soap_Client - Ignore HTTPS verification

    - by Vincent
    All, I want to use Zend_Soap_Client class to load WSDL from an HTTPS url. Currently, if I call like this, it gives me an error even if the WSDL is perfectly valid: $wsdlUrl = "https://abc.xyz.com/webservices/WeatherService.php?wsdl"; $soapClient = new Zend_Soap_Client($wsdlUrl); The error I receive is: SOAP-ERROR: Parsing WSDL: Couldn't load from 'https://abc.xyz.com/webservices /WeatherService.php?wsdl' : Start tag expected, '<' not found If I browse to the WSDL url in the browser, it loads up the WSDL just fine. I think Zend_Soap_Client is trying to validate the certificate and failing. Is there a way to set the SOAP option to ignore the HTTPS verification and just load the WSDL? Thanks

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  • How to debug packet loss ?

    - by Gene Vincent
    I wrote a C++ application (running on Linux) that serves an RTP stream of about 400 kbps. To most destinations this works fine, but some destinations expericence packet loss. The problematic destinations seem to have a slower connection in common, but it should be plenty fast enough for the stream I'm sending. Since these destinations are able to receive similar RTP streams for other applications without packet loss, my application might be at fault. I already verified a few things: - in a tcpdump, I see all RTP packets going out on the sending machine - there is a UDP send buffer in place (I tried sizes between 64KB and 300KB) - the RTP packets mostly stay below 1400 bytes to avoid fragmentation What can a sending application do to minimize the possibility of packet loss and what would be the best way to debug such a situation ?

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  • CSS for https urls

    - by Vincent
    Hello, looking for some help with images referenced within the stylesheet. I have no problems with these from non secure locations within the site but only from https. The stylesheet loads fine and displays everything correctly except for the images. example: body { margin: 0; padding: 0; background: url(/img/background_tile.gif) top left repeat-x; text-align: center; background-color: #fff; } All my css files and other image paths inside the code use relative urls to images. How can I make sure they all work fine without hard coding my image paths with https or http? I want the code to work fine with http and https. Thanks

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  • merge() multiple data frames (do.call ?)

    - by Vincent
    Hi everyone, here's my very simple question: merge() only takes two data frames as input. I need to merge a series of data frames from a list, using the same keys for every merge operation. Given a list named "test", I want to do something like: do.call("merge", test). I could write some kind of loop, but I'm wondering if there's a standard or built-in way to do this more efficiently. Any advice is appreciated. Thanks! Here's a subset of the dataset in dput format (note that merging on country is trivial in this case, but that there are more countries in the original data): test <- list(structure(list(country = c("United States", "United States", "United States", "United States", "United States"), NY.GNS.ICTR.GN.ZS = c(13.5054687, 14.7608697, 14.1115876, 13.3389063, 12.9048351), year = c(2007, 2006, 2005, 2004, 2003)), .Names = c("country", "NY.GNS.ICTR.GN.ZS", "year"), row.names = c(NA, 5L), class = "data.frame"), structure(list( country = c("United States", "United States", "United States", "United States", "United States"), NE.TRD.GNFS.ZS = c(29.3459277, 28.352838, 26.9861939, 25.6231246, 23.6615328), year = c(2007, 2006, 2005, 2004, 2003)), .Names = c("country", "NE.TRD.GNFS.ZS", "year"), row.names = c(NA, 5L), class = "data.frame"), structure(list( country = c("United States", "United States", "United States", "United States", "United States"), NY.GDP.MKTP.CD = c(1.37416e+13, 1.31165e+13, 1.23641e+13, 1.16309e+13, 1.0908e+13), year = c(2007, 2006, 2005, 2004, 2003)), .Names = c("country", "NY.GDP.MKTP.CD", "year"), row.names = c(NA, 5L), class = "data.frame"))

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  • Search for string allowing for one mismatches in any location of the string, Python

    - by Vincent
    I am working with DNA sequences of length 25 (see examples below). I have a list of 230,000 and need to look for each sequence in the entire genome (toxoplasma gondii parasite) I am not sure how large the genome is but much more that 230,000 sequences. I need to look for each of my sequences of 25 characters example(AGCCTCCCATGATTGAACAGATCAT). The genome is formatted as a continuous string ie (CATGGGAGGCTTGCGGAGCCTGAGGGCGGAGCCTGAGGTGGGAGGCTTGCGGAGTGCGGAGCCTGAGCCTGAGGGCGGAGCCTGAGGTGGGAGGCTT.........) I don't care where or how many times it is found, just yes or no. This is simple I think, str.find(AGCCTCCCATGATTGAACAGATCAT) But I also what to find a close match defined as wrong(mismatched) at any location but only 1 location and record the location in the sequnce. I am not sure how do do this. The only thing I can think of is using a wildcard and performing the search with a wildcard in each position. ie search 25 times. For example AGCCTCCCATGATTGAACAGATCAT AGCCTCCCATGATAGAACAGATCAT close match with a miss-match at position 13 Speed is not a big issue I am only doing it 3 times. i hope but it would be nice it was fast. The are programs that do this find matches and partial matches but I am looking for a type of partial match that is not available with these applications. Here is a similar post for pearl but they are only comparing sequnces not searching a continuous string Related post

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  • Pear SOAP and XAMPP on Ubuntu

    - by Vincent
    All, I have installed xampp for linux on ubuntu 9.10. The installation directory is /opt/lampp. The xampp website says PEAR comes with the installation.. I am relatively new to PEAR and want to know the answers for following: Is PEAR installed with xampp or need to be installed separately using synaptic package manager? I browse to /opt/lampp/bin directory and see "pear" there, but when i type it in the command line, it says "The program 'pear' is currently not installed. You can install it by typing: sudo apt-get install php-pear pear: command not found " I want to use PEAR:SOAP package in my PHP code. How to use that? Do I need to set any paths to the pear in my php.ini? Thanks

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  • Graceful termination of NSApplication with Core Data and Grand Central Dispatch (GCD)

    - by Vincent Mac
    I have an Cocoa Application (Mac OS X SDK 10.7) that is performing some processes via Grand Central Dispatch (GCD). These processes are manipulating some Core Data NSManagedObjects (non-document-based) in a manner that I believe is thread safe (creating a new managedObjectContext for use in this thread). The problem I have is when the user tries to quit the application while the dispatch queue is still running. The NSApplication delegate is being called before actually quitting. - (NSApplicationTerminateReply)applicationShouldTerminate:(NSApplication *)sender I get an error "Could not merge changes." Which is somewhat expected since there are still operations being performed through the different managedObjectContext. I am then presented with the NSAlert from the template that is generated with a core data application. In the Threading Programming Guide there is a section called "Be Aware of Thread Behaviors at Quit Time" which alludes to using replyToApplicationShouldTerminate: method. I'm having a little trouble implementing this. What I would like is for my application to complete processing the queued items and then terminate without presenting an error message to the user. It would also be helpful to update the view or use a sheet to let the user know that the app is performing some action and will terminate when the action is complete. Where and how would I implement this behavior?

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