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  • Netlogo Programming question - Chemical Equilibrium temperature and pressure implementation

    - by user286190
    Hi I am trying to code something in Netlogo..I am using an existing model Chemical Equilibrium and am trying to implement the following: turtles-own [speed ] ask turtles [ ;; set velocity ( ambient-temperature = 30 ) ;; fd velocity if temp > 40 [ "speed" increases of turtles ] ifelse temperature < 30 [ speed of turtles decreases] ] ;; to temp but it does not seem to work (it temperature is more than 40 the speed of the turtles increases if the temperature is less than 30 the speed of the turtles decreases) temperature is a slider on the model the same for pressure ask turtles [ ;; if pressure > 50 then speed increases of turtles ;; if pressure < 50 then speed decreases of turtles ] ;; to pressure thanks

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  • Ubuntu 12.04 on MAC Mini G4

    - by Buford Speed
    I have a MAC Mini G4. I would like to install Ubuntu on it. I have looked at this Q&A Mac G4 with no OS: can Ubuntu be used?, and I have a question. Is it worth the hassle to install Ubuntu, or should I keep MAC OS. The unit has MAC OS 10.4 (Tiger). It is used for normal day to day operations, word processing, spreadsheets, browsing, and keeping track of finances. I'd like to install Ubuntu if I can. So is it possible?

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  • Shotwell issues in 11.10

    - by John Speed
    I had used Shotwell happily previously then updated to Natty last week. Despite Shotwell showing on the tool bar on screen, when clicked, nothing happened, and it ignored my SD card when loaded. I read all sorts of remedies and tried everything to no avail. When I next turned on the laptop, Ocelot was available so with nothing to loose, I upgraded again. Still no Shotwell. Tried all the new fixes and now atleast I have the icon pictures but nothing behind it. When I ran the command to load the log file, Shotwell loaded and all my photos are present. Exited programme, and now nothing. Can anyone tell me where I have gone wrong please.

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  • Shotwell not available in 11.10

    - by John Speed
    I had used Shotwell happily previously then updated to Natty last week. Despite Shotwell showing on the tool bar on screen, when clicked, nothing happened, and it ignored my SD card when loaded. I read all sorts of remedies and tried everything to no avail. When I next turned on the laptop, Ocelot was available so with nothing to loose, I upgraded again. Still no Shotwell. Tried all the new fixes and now atleast I have the icon pictures but nothing behind it. When I ran the command to load the log file, Shotwell loaded and all my photos are present. Exited programme, and now nothing. Can anyone tell me where I have gone wrong please.

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  • How to set permissions so two users can work on the same hg repository?

    - by John Mee
    Ubuntu: Jaunty Mercurial: 1.3.1 Access: ssh (users john and bob) File permission: -rw-rw---- 1 john john 129276 May 17 13:28 dirstate User: bob Command: 'hg st' Response: **abort: Permission denied: /our/respository/.hg/dirstate** Obviously mercurial can't let bob see the state because the file it needs to read belongs to me. So I change the permissions to allow bob to read the file and everything is fine, up until I next try to do something, whence the situations are reversed. Now he owns the file and I can't read it. So I set up a "committers" group and both john and bob belong to the group, but still mercurial fiddles with the ownership and permissions whenever one or other commits. How do we configure it so two different logins in the same group can commit to the same repository over ssh?

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  • How to use htaccess to rewrite url to html anchor tag (#)

    - by Lee L
    Hi - I have a situation where I want to take the following URL: /1/john and have it redirect using Apache's htaccess file to go to /page.php?id=1&name=john#john so that it goes to an html anchor with the name of john. I've found a lot of reference to escaping special characters, and to adding the [NE] flag so that the redirect ignores the # sign, but these don't work. For example, adding [NE,R] means that the URL just appears in the browser address as the original: http://mysite.com/page.php?id=1&name=john#john. Any help would be appreciated.

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  • jQuery :contains selector to search for multiple strings

    - by Stefan
    Assuming i have: <li id="1">Mary</li> <li id="2">John, Mary, Dave</li> <li id="3">John, Dave, Mary</li> <li id="4">John</li> If i need to find all <li> Elements which contain "John" and "Mary", how would i construct the jQuery? A search for a single string seems easy: $('li:contains("John")').text() I am looking for something like the following pseudo code: $('li:contains("John")' && 'li:contains("Mary")').text() Thanks!

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  • How to use Scala interpreter options with SBT?

    - by John Threepwood
    When using the Scala interpreter, one could start it with an option like: C:\Users\John>scala -unchecked Welcome to Scala version 2.9.2 (Java HotSpot(TM) Client VM, Java 1.6.0_32). Type in expressions to have them evaluated. Type :help for more information. scala> When using sbt, how can one start the Scala interpreter with options ? The following try will not work: C:\Users\John\Test Scala Project 1>sbt [...] [info] Loading global plugins from C:\Users\John\.sbt\plugins [info] Set current project to default-8d4ecc (in build file:/C:/Users/John/Tes t%20Scala%20Project%201/) > console -unchecked [error] Expected end of input. [error] console -unchecked [error] ^ With Google & Co I could not figure out how to do this from within the sbt shell. Does anyone know ?

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  • Excel VBA Macro for Pivot Table with Dynamic Data Range

    - by John Ziebro
    CODE IS WORKING! THANKS FOR THE HELP! I am attempting to create a dynamic pivot table that will work on data that varies in the number of rows. Currently, I have 28,300 rows, but this may change daily. Example of data format as follows: Case Number Branch Driver 1342 NYC Bob 4532 PHL Jim 7391 CIN John 8251 SAN John 7211 SAN Mary 9121 CLE John 7424 CIN John Example of finished table: Driver NYC PHL CIN SAN CLE Bob 1 0 0 0 0 Jim 0 1 0 0 0 John 0 0 2 1 1 Mary 0 0 0 1 0 Code as follows: Sub CreateSummaryReportUsingPivot() ' Use a Pivot Table to create a static summary report ' with model going down the rows and regions across Dim WSD As Worksheet Dim PTCache As PivotCache Dim PT As PivotTable Dim PRange As Range Dim FinalRow As Long Dim FinalCol As Long Set WSD = Worksheets("PivotTable") 'Name active worksheet as "PivotTable" ActiveSheet.Name = "PivotTable" ' Delete any prior pivot tables For Each PT In WSD.PivotTables PT.TableRange2.Clear Next PT ' Define input area and set up a Pivot Cache FinalRow = WSD.Cells(Application.Rows.Count, 1).End(xlUp).Row FinalCol = WSD.Cells(1, Application.Columns.Count). _ End(xlToLeft).Column Set PRange = WSD.Cells(1, 1).Resize(FinalRow, FinalCol) Set PTCache = ActiveWorkbook.PivotCaches.Add(SourceType:= _ xlDatabase, SourceData:=PRange) ' Create the Pivot Table from the Pivot Cache Set PT = PTCache.CreatePivotTable(TableDestination:=WSD. _ Cells(2, FinalCol + 2), TableName:="PivotTable1") ' Turn off updating while building the table PT.ManualUpdate = True ' Set up the row fields PT.AddFields RowFields:="Driver", ColumnFields:="Branch" ' Set up the data fields With PT.PivotFields("Case Number") .Orientation = xlDataField .Function = xlCount .Position = 1 End With With PT .ColumnGrand = False .RowGrand = False .NullString = "0" End With ' Calc the pivot table PT.ManualUpdate = False PT.ManualUpdate = True End Sub

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  • Linux per-process resource limits - a deep Red Hat Mystery

    - by BobBanana
    I have my own multithreaded C program which scales in speed smoothly with the number of CPU cores.. I can run it with 1, 2, 3, etc threads and get linear speedup.. up to about 5.5x speed on a 6-core CPU on a Ubuntu Linux box. I had an opportunity to run the program on a very high end Sunfire x4450 with 4 quad-core Xeon processors, running Red Hat Enterprise Linux. I was eagerly anticipating seeing how fast the 16 cores could run my program with 16 threads.. But it runs at the same speed as just TWO threads! Much hair-pulling and debugging later, I see that my program really is creating all the threads, they really are running simultaneously, but the threads themselves are slower than they should be. 2 threads runs about 1.7x faster than 1, but 3, 4, 8, 10, 16 threads all run at just net 1.9x! I can see all the threads are running (not stalled or sleeping), they're just slow. To check that the HARDWARE wasn't at fault, I ran SIXTEEN copies of my program independently, simultaneously. They all ran at full speed. There really are 16 cores and they really do run at full speed and there really is enough RAM (in fact this machine has 64GB, and I only use 1GB per process). So, my question is if there's some OPERATING SYSTEM explanation, perhaps some per-process resource limit which automatically scales back thread scheduling to keep one process from hogging the machine. Clues are: My program does not access the disk or network. It's CPU limited. Its speed scales linearly on a single CPU box in Ubuntu Linux with a hexacore i7 for 1-6 threads. 6 threads is effectively 6x speedup. My program never runs faster than 2x speedup on this 16 core Sunfire Xeon box, for any number of threads from 2-16. Running 16 copies of my program single threaded runs perfectly, all 16 running at once at full speed. top shows 1600% of CPUs allocated. /proc/cpuinfo shows all 16 cores running at full 2.9GHz speed (not low frequency idle speed of 1.6GHz) There's 48GB of RAM free, it is not swapping. What's happening? Is there some process CPU limit policy? How could I measure it if so? What else could explain this behavior? Thanks for your ideas to solve this, the Great Xeon Slowdown Mystery of 2010!

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  • Parsing names with pyparsing

    - by johnthexiii
    I have a file of names and ages, john 25 bob 30 john bob 35 Here is what I have so far from pyparsing import * data = ''' john 25 bob 30 john bob 35 ''' name = Word(alphas + Optional(' ') + alphas) rowData = Group(name + Suppress(White(" ")) + Word(nums)) table = ZeroOrMore(rowData) print table.parseString(data) the output I am expecting is [['john', 25], ['bob', 30], ['john bob', 35]] Here is the stacktrace Traceback (most recent call last): File "C:\Users\mccauley\Desktop\client.py", line 11, in <module> eventType = Word(alphas + Optional(' ') + alphas) File "C:\Python27\lib\site-packages\pyparsing.py", line 1657, in __init__ self.name = _ustr(self) File "C:\Python27\lib\site-packages\pyparsing.py", line 122, in _ustr return str(obj) File "C:\Python27\lib\site-packages\pyparsing.py", line 1743, in __str__ self.strRepr = "W:(%s)" % charsAsStr(self.initCharsOrig) File "C:\Python27\lib\site-packages\pyparsing.py", line 1735, in charsAsStr if len(s)>4: TypeError: object of type 'And' has no len()

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  • How do I make cars on a one-dimensional track avoid collisions?

    - by user990827
    Using three.js, I use a simple spline to represent a road. Cars can only move forward on the spline. A car should be able to slow-down behind a slow moving car. I know how to calculate the distance between 2 cars, but how to calculate the proper speed in each game update? At the moment I simply do something like this: this.speed += (this.maxSpeed - this.speed) * 0.02; // linear interpolation to maxSpeed // the position on the spline (0.0 - 1.0) this.position += this.speed / this.road.spline.getLength(); This works. But how to implement the slow-down part? // transform from floats (0.0 - 1.0) into actual units var carInFrontPosition = carInFront.position * this.road.spline.getLength(); var myPosition = this.position * this.road.spline.getLength(); var distance = carInFrontPosition - myPosition; // WHAT TO DO HERE WITH THE DISTANCE? // HOW TO CALCULATE MY NEW SPEED? Obviously I have to somehow take current speed of the cars into account for calculation. Besides different maxSpeeds, I want each car to also have a different mass (causing it to accelerate slower/faster). But this mass has to be then also taken into account for braking (slowing down) so they don't crash into each other.

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  • Way to speed up load-balanced ssl using nginx?

    - by paulnsorensen
    So the setup for our website is 4 nodes running rails 3 and nginx 1 that all use the same GoDaddy certificate. Because we are a paid site, we have to maintain PCI-DSS compliance and thus have to use the more expensive SSL ciphers -- also we force SSL using Rack. I've recently switched over to Linode's NodeBalancer (which I've read is an HACluster), and we're not getting the performance we'd ideally like. From what I've read, it looks like terminating the SSL on the nodes using the high cipher is what is causing the poor performance, but I'd like to be thorough. Is there anything I can do? I've read about other ways to terminate the SSL before the NodeBalancer (like using stud), but I don't know enough about these solutions. We certainly don't want to do anything experimental or anything that has a single point of failure. If there really isn't anything I can do to speed up the SSL handshake, my alternative would be to support certain pages on Rails using a secure and insecure subdomain. I've found a few guides that walk through that, but my resulting question is in this situation, would it be better to have nginx handle forcing ssl on the secure subdomain instead of rails? Thanks!

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  • Is there any way to limit the turbo boost speed / intensity on i7 lap?

    - by Anonymous
    I've just got a used i7 laptop, one of these overheating pavilions from HP with quad cores. And I really want to find a compromise between the temp and performance. If I use linpack, or some other heavy benchmark, the temp easily gets to 95+, and having a TJ of 100 Degrees, for a 2630QM model, it really gets me throttling, that no cooling pad or even an industrial fan could solve. I figured later that it is due to turbo boost, and if I set my power settings to use 99% of the CPU instead of 100%, and it seems to disable the turbo boost, so the temp gets better. But then again it loses quite a bit of performance. The regular clock is 2GHz, and in turbo boost it gets to 2.6Ghz, but I just wonder if I could limit it to around 2.3Ghz, that would be a real nice thing. Also there is another question I've hard time getting answer to. It seems to me that clocks are very quickly boosting up to max even when not needed, eg, it's ok if the CPU has 0% load, the clocks get to their 800MHz, but even if it gets to about 5% it quickly jumps to a max and even popping up turbo, which seems very strange to me. So I wonder if there is any way to adjust the sensitivity of the Speed Step feature. I believe it would be more logical to demand increased clock if it hits let's say 50% load. I do understand that most of these features are probably hardwired somewhere in the CPU itself or the MB, which has no tuning options just like on many laptops. But I would appreciate if you could recommend some thing, or some software. Thanks

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  • How to speed up the reading of innerHTML in IE8?

    - by Dennis Cheung
    I am using JQuery with the DataTable plugin, and now I have a big performnce issue on the following line. aLocalData[jInner] = nTds[j].innerHTML; // jquery.dataTables.js:2220 I have a ajax call, and result string in HTML format. I convert them into HTML nodes, and that part is ok. var $result = $('<div/>').html(result).find("*:first"); // simlar to $result=$(result) but much more faster in Fx Then I activate enable the result from a plain table to a sortable datatable. The speed is acceptable in Fx (around 4sec for 900 rows), but unacceptable in IE8 (more then 100 seconds). I check it deep using the buildin profiler, and found the above single line take all 99.9% of the time, how can I speed it up? anything I missed? nTrs = oSettings.nTable.getElementsByTagName('tbody')[0].childNodes; for ( i=0, iLen=nTrs.length ; i<iLen ; i++ ) { if ( nTrs[i].nodeName == "TR" ) { iThisIndex = oSettings.aoData.length; oSettings.aoData.push( { "nTr": nTrs[i], "_iId": oSettings.iNextId++, "_aData": [], "_anHidden": [], "_sRowStripe": '' } ); oSettings.aiDisplayMaster.push( iThisIndex ); aLocalData = oSettings.aoData[iThisIndex]._aData; nTds = nTrs[i].childNodes; jInner = 0; for ( j=0, jLen=nTds.length ; j<jLen ; j++ ) { if ( nTds[j].nodeName == "TD" ) { aLocalData[jInner] = nTds[j].innerHTML; // jquery.dataTables.js:2220 jInner++; } } } }

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  • How can I speed up Subversion checkins? (Using ANKH, latest, Visual Studio 2010)

    - by Timothy Khouri
    I've started working on a new web project with some friends... we are using the latest Subversion server (installed last week), the latest version of ANKH. My web project is a whapping 1.5 megabytes (that's with all images, css files, dll's after compiling, pdb files... etc). Checking in even super small changes (literally adding the letter "x" to a few files for testing)... takes FOREVER! (about 10 seconds - I almost killed myself). The ANKH client is measuring in BYTES PER SECOND ... BYTES? per second... I must be doing something wrong. Does anyone what config file has a joke totallyMessWithPeople=true so that I can turn that off or something? Oh, also, changing one "big" file of a super 10k gains speed up to nearly the speed of light (which is apparently 857 bytes per second). Help me obi wan kenobi, your my only hope! EDIT: As a note... my real work project that uses Visual Source Safe 2005 (I know, ouch) uploads files at about 200-500kbps from this very same computer/internet connection.

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  • Why does Tex/Latex not speed up in subsequent runs?

    - by Debilski
    I really wonder, why even recent systems of Tex/Latex do not use any caching to speed up later runs. Every time that I fix a single comma*, calling Latex costs me about the same amount of time, because it needs to load and convert every single picture file. (* I know that even changing a tiny comma could affect the whole structure but of course, a well-written cache format could see the impact of that. Also, there might be situations where 100% correctness is not needed as long as it’s fast.) Is there something in the language of Tex which makes this complicated or impossible to accomplish or is it just that in the original implementation of Tex, there was no need for this (because it would have been slow anyway on those large computers)? But then on the other hand, why doesn’t this annoy other people so much that they’ve started a fork which has some sort of caching (or transparent conversion of Tex files to a format which is faster to parse)? Is there anything I can do to speed up subsequent runs of Latex? Except from putting all the stuff into chapterXX.tex files and then commenting them out?

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  • How do I optimize this postfix expression tree for speed?

    - by Peter Stewart
    Thanks to the help I received in this post: I have a nice, concise recursive function to traverse a tree in postfix order: deque <char*> d; void Node::postfix() { if (left != __nullptr) { left->postfix(); } if (right != __nullptr) { right->postfix(); } d.push_front(cargo); return; }; This is an expression tree. The branch nodes are operators randomly selected from an array, and the leaf nodes are values or the variable 'x', also randomly selected from an array. char *values[10]={"1.0","2.0","3.0","4.0","5.0","6.0","7.0","8.0","9.0","x"}; char *ops[4]={"+","-","*","/"}; As this will be called billions of times during a run of the genetic algorithm of which it is a part, I'd like to optimize it for speed. I have a number of questions on this topic which I will ask in separate postings. The first is: how can I get access to each 'cargo' as it is found. That is: instead of pushing 'cargo' onto a deque, and then processing the deque to get the value, I'd like to start processing it right away. I don't yet know about parallel processing in c++, but this would ideally be done concurrently on two different processors. In python, I'd make the function a generator and access succeeding 'cargo's using .next(). But I'm using c++ to speed up the python implementation. I'm thinking that this kind of tree has been around for a long time, and somebody has probably optimized it already. Any Ideas? Thanks

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  • How can I speed up a 1800-line PHP include? It's slowing my pageload down to 10sec/view

    - by somerandomguy
    I designed my code to put all important functions in a single PHP file that's now 1800 lines long. I call it in other PHP files--AJAX processors, for example--with a simple "require_once("codeBank.php")". I'm discovering that it takes about 10 seconds to load up all those functions, even though I have nothing more than a few global arrays and a bunch of other functions involved. The main AJAX processor code, for example, is taking 8 seconds just to do a simple syntax verification (whose operational function is stored in codeBank.php). When I comment out the require_once, my AJAX response time speeds up from 10sec to 40ms, so it's pretty clear that PHP's trying to do something with those 1800 lines of functions. That's even with APC installed, which is surprising. What should I do to get my code speed back to the sub-100ms level? Am I failing to get the cache's benefit somehow? Do I need to cut that single function bank file into different pieces? Are there other subtle things that I could be doing to screw up my response time? Or barring all that, what are some tools to dig further into which PHP operations are hitting speed bumps?

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  • Fan not working on thinkpad L430, laptop overheating

    - by Dirk B.
    I'm having problems controlling the fan of my Lenovo Thinkpad L430. The fan doesn't start. Without any fan control installed the fan just doesn't run. If I run stress, it does run a little, but it's nowhere near the speed it should be. After a while, the laptop just overheats and stops. I Tried to install tp-fancontrol, and enabled thinkpad_acpi fancontrol=1, but to no avail. If I try to set the fan speed manually, it doesn't start up. In windows, there's a program called TPFanControl. It turns out that this laptop uses a different scheme to control the fan than other thinkpads. The level runs from 0 to 255, and max = 0 and min=255. Now I'm looking for a fan control program that works for linux. Does anyone know if it actually exists? Anyone with any experience on fan control on a L430? Update: sudo pwmconfig gives the following output: # pwmconfig revision 5857 (2010-08-22) This program will search your sensors for pulse width modulation (pwm) controls, and test each one to see if it controls a fan on your motherboard. Note that many motherboards do not have pwm circuitry installed, even if your sensor chip supports pwm. We will attempt to briefly stop each fan using the pwm controls. The program will attempt to restore each fan to full speed after testing. However, it is ** very important ** that you physically verify that the fans have been to full speed after the program has completed. Found the following devices: hwmon0 is acpitz hwmon1/device is coretemp hwmon2/device is thinkpad Found the following PWM controls: hwmon2/device/pwm1 hwmon2/device/pwm1 is currently setup for automatic speed control. In general, automatic mode is preferred over manual mode, as it is more efficient and it reacts faster. Are you sure that you want to setup this output for manual control? (n) y Giving the fans some time to reach full speed... Found the following fan sensors: hwmon2/device/fan1_input current speed: 0 ... skipping! There are no working fan sensors, all readings are 0. Make sure you have a 3-wire fan connected. You may also need to increase the fan divisors. See doc/fan-divisors for more information. regards, Dirk

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  • Lenovo Thinkpad L430 overheating due to fan problems

    - by Dirk B.
    This is the same question as Fan not working on thinkpad L430, laptop overheating, but that question has been marked as a duplicate, which it is not, and I cannot reopen it. I'm having problems controlling the fan of my Lenovo Thinkpad L430. The fan doesn't start. Without any fan control installed the fan just doesn't run. If I run stress, it does run a little, but it's nowhere near the speed it should be. After a while, the laptop just overheats and stops. I Tried to install tp-fancontrol, and enabled thinkpad_acpi fancontrol=1, but to no avail. If I try to set the fan speed manually, it doesn't start up. In windows, there's a program called TPFanControl. It turns out that this laptop uses a different scheme to control the fan than other thinkpads. The level runs from 0 to 255, and max = 0 and min=255. Now I'm looking for a fan control program that works for linux. Does anyone know if it actually exists? Anyone with any experience on fan control on a L430? Update: sudo pwmconfig gives the following output: # pwmconfig revision 5857 (2010-08-22) This program will search your sensors for pulse width modulation (pwm) controls, and test each one to see if it controls a fan on your motherboard. Note that many motherboards do not have pwm circuitry installed, even if your sensor chip supports pwm. We will attempt to briefly stop each fan using the pwm controls. The program will attempt to restore each fan to full speed after testing. However, it is ** very important ** that you physically verify that the fans have been to full speed after the program has completed. Found the following devices: hwmon0 is acpitz hwmon1/device is coretemp hwmon2/device is thinkpad Found the following PWM controls: hwmon2/device/pwm1 hwmon2/device/pwm1 is currently setup for automatic speed control. In general, automatic mode is preferred over manual mode, as it is more efficient and it reacts faster. Are you sure that you want to setup this output for manual control? (n) y Giving the fans some time to reach full speed... Found the following fan sensors: hwmon2/device/fan1_input current speed: 0 ... skipping! There are no working fan sensors, all readings are 0. Make sure you have a 3-wire fan connected. You may also need to increase the fan divisors. See doc/fan-divisors for more information. update: If you need it, lspci is available here

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  • LSI 9285-8e and Supermicro SC837E26-RJBOD1 duplicate enclosure ID and slot numbers

    - by Andy Shinn
    I am working with 2 x Supermicro SC837E26-RJBOD1 chassis connected to a single LSI 9285-8e card in a Supermicro 1U host. There are 28 drives in each chassis for a total of 56 drives in 28 RAID1 mirrors. The problem I am running in to is that there are duplicate slots for the 2 chassis (the slots list twice and only go from 0 to 27). All the drives also show the same enclosure ID (ID 36). However, MegaCLI -encinfo lists the 2 enclosures correctly (ID 36 and ID 65). My question is, why would this happen? Is there an option I am missing to use 2 enclosures effectively? This is blocking me rebuilding a drive that failed in slot 11 since I can only specify enclosure and slot as parameters to replace a drive. When I do this, it picks the wrong slot 11 (device ID 46 instead of device ID 19). Adapter #1 is the LSI 9285-8e, adapter #0 (which I removed due to space limitations) is the onboard LSI. Adapter information: Adapter #1 ============================================================================== Versions ================ Product Name : LSI MegaRAID SAS 9285-8e Serial No : SV12704804 FW Package Build: 23.1.1-0004 Mfg. Data ================ Mfg. Date : 06/30/11 Rework Date : 00/00/00 Revision No : 00A Battery FRU : N/A Image Versions in Flash: ================ BIOS Version : 5.25.00_4.11.05.00_0x05040000 WebBIOS Version : 6.1-20-e_20-Rel Preboot CLI Version: 05.01-04:#%00001 FW Version : 3.140.15-1320 NVDATA Version : 2.1106.03-0051 Boot Block Version : 2.04.00.00-0001 BOOT Version : 06.253.57.219 Pending Images in Flash ================ None PCI Info ================ Vendor Id : 1000 Device Id : 005b SubVendorId : 1000 SubDeviceId : 9285 Host Interface : PCIE ChipRevision : B0 Number of Frontend Port: 0 Device Interface : PCIE Number of Backend Port: 8 Port : Address 0 5003048000ee8e7f 1 5003048000ee8a7f 2 0000000000000000 3 0000000000000000 4 0000000000000000 5 0000000000000000 6 0000000000000000 7 0000000000000000 HW Configuration ================ SAS Address : 500605b0038f9210 BBU : Present Alarm : Present NVRAM : Present Serial Debugger : Present Memory : Present Flash : Present Memory Size : 1024MB TPM : Absent On board Expander: Absent Upgrade Key : Absent Temperature sensor for ROC : Present Temperature sensor for controller : Absent ROC temperature : 70 degree Celcius Settings ================ Current Time : 18:24:36 3/13, 2012 Predictive Fail Poll Interval : 300sec Interrupt Throttle Active Count : 16 Interrupt Throttle Completion : 50us Rebuild Rate : 30% PR Rate : 30% BGI Rate : 30% Check Consistency Rate : 30% Reconstruction Rate : 30% Cache Flush Interval : 4s Max Drives to Spinup at One Time : 2 Delay Among Spinup Groups : 12s Physical Drive Coercion Mode : Disabled Cluster Mode : Disabled Alarm : Enabled Auto Rebuild : Enabled Battery Warning : Enabled Ecc Bucket Size : 15 Ecc Bucket Leak Rate : 1440 Minutes Restore HotSpare on Insertion : Disabled Expose Enclosure Devices : Enabled Maintain PD Fail History : Enabled Host Request Reordering : Enabled Auto Detect BackPlane Enabled : SGPIO/i2c SEP Load Balance Mode : Auto Use FDE Only : No Security Key Assigned : No Security Key Failed : No Security Key Not Backedup : No Default LD PowerSave Policy : Controller Defined Maximum number of direct attached drives to spin up in 1 min : 10 Any Offline VD Cache Preserved : No Allow Boot with Preserved Cache : No Disable Online Controller Reset : No PFK in NVRAM : No Use disk activity for locate : No Capabilities ================ RAID Level Supported : RAID0, RAID1, RAID5, RAID6, RAID00, RAID10, RAID50, RAID60, PRL 11, PRL 11 with spanning, SRL 3 supported, PRL11-RLQ0 DDF layout with no span, PRL11-RLQ0 DDF layout with span Supported Drives : SAS, SATA Allowed Mixing: Mix in Enclosure Allowed Mix of SAS/SATA of HDD type in VD Allowed Status ================ ECC Bucket Count : 0 Limitations ================ Max Arms Per VD : 32 Max Spans Per VD : 8 Max Arrays : 128 Max Number of VDs : 64 Max Parallel Commands : 1008 Max SGE Count : 60 Max Data Transfer Size : 8192 sectors Max Strips PerIO : 42 Max LD per array : 16 Min Strip Size : 8 KB Max Strip Size : 1.0 MB Max Configurable CacheCade Size: 0 GB Current Size of CacheCade : 0 GB Current Size of FW Cache : 887 MB Device Present ================ Virtual Drives : 28 Degraded : 0 Offline : 0 Physical Devices : 59 Disks : 56 Critical Disks : 0 Failed Disks : 0 Supported Adapter Operations ================ Rebuild Rate : Yes CC Rate : Yes BGI Rate : Yes Reconstruct Rate : Yes Patrol Read Rate : Yes Alarm Control : Yes Cluster Support : No BBU : No Spanning : Yes Dedicated Hot Spare : Yes Revertible Hot Spares : Yes Foreign Config Import : Yes Self Diagnostic : Yes Allow Mixed Redundancy on Array : No Global Hot Spares : Yes Deny SCSI Passthrough : No Deny SMP Passthrough : No Deny STP Passthrough : No Support Security : No Snapshot Enabled : No Support the OCE without adding drives : Yes Support PFK : Yes Support PI : No Support Boot Time PFK Change : Yes Disable Online PFK Change : No PFK TrailTime Remaining : 0 days 0 hours Support Shield State : Yes Block SSD Write Disk Cache Change: Yes Supported VD Operations ================ Read Policy : Yes Write Policy : Yes IO Policy : Yes Access Policy : Yes Disk Cache Policy : Yes Reconstruction : Yes Deny Locate : No Deny CC : No Allow Ctrl Encryption: No Enable LDBBM : No Support Breakmirror : No Power Savings : Yes Supported PD Operations ================ Force Online : Yes Force Offline : Yes Force Rebuild : Yes Deny Force Failed : No Deny Force Good/Bad : No Deny Missing Replace : No Deny Clear : No Deny Locate : No Support Temperature : Yes Disable Copyback : No Enable JBOD : No Enable Copyback on SMART : No Enable Copyback to SSD on SMART Error : Yes Enable SSD Patrol Read : No PR Correct Unconfigured Areas : Yes Enable Spin Down of UnConfigured Drives : Yes Disable Spin Down of hot spares : No Spin Down time : 30 T10 Power State : Yes Error Counters ================ Memory Correctable Errors : 0 Memory Uncorrectable Errors : 0 Cluster Information ================ Cluster Permitted : No Cluster Active : No Default Settings ================ Phy Polarity : 0 Phy PolaritySplit : 0 Background Rate : 30 Strip Size : 64kB Flush Time : 4 seconds Write Policy : WB Read Policy : Adaptive Cache When BBU Bad : Disabled Cached IO : No SMART Mode : Mode 6 Alarm Disable : Yes Coercion Mode : None ZCR Config : Unknown Dirty LED Shows Drive Activity : No BIOS Continue on Error : No Spin Down Mode : None Allowed Device Type : SAS/SATA Mix Allow Mix in Enclosure : Yes Allow HDD SAS/SATA Mix in VD : Yes Allow SSD SAS/SATA Mix in VD : No Allow HDD/SSD Mix in VD : No Allow SATA in Cluster : No Max Chained Enclosures : 16 Disable Ctrl-R : Yes Enable Web BIOS : Yes Direct PD Mapping : No BIOS Enumerate VDs : Yes Restore Hot Spare on Insertion : No Expose Enclosure Devices : Yes Maintain PD Fail History : Yes Disable Puncturing : No Zero Based Enclosure Enumeration : No PreBoot CLI Enabled : Yes LED Show Drive Activity : Yes Cluster Disable : Yes SAS Disable : No Auto Detect BackPlane Enable : SGPIO/i2c SEP Use FDE Only : No Enable Led Header : No Delay during POST : 0 EnableCrashDump : No Disable Online Controller Reset : No EnableLDBBM : No Un-Certified Hard Disk Drives : Allow Treat Single span R1E as R10 : No Max LD per array : 16 Power Saving option : Don't Auto spin down Configured Drives Max power savings option is not allowed for LDs. Only T10 power conditions are to be used. Default spin down time in minutes: 30 Enable JBOD : No TTY Log In Flash : No Auto Enhanced Import : No BreakMirror RAID Support : No Disable Join Mirror : No Enable Shield State : Yes Time taken to detect CME : 60s Exit Code: 0x00 Enclosure information: # /opt/MegaRAID/MegaCli/MegaCli64 -encinfo -a1 Number of enclosures on adapter 1 -- 3 Enclosure 0: Device ID : 36 Number of Slots : 28 Number of Power Supplies : 2 Number of Fans : 3 Number of Temperature Sensors : 1 Number of Alarms : 1 Number of SIM Modules : 0 Number of Physical Drives : 28 Status : Normal Position : 1 Connector Name : Port B Enclosure type : SES VendorId is LSI CORP and Product Id is SAS2X36 VendorID and Product ID didnt match FRU Part Number : N/A Enclosure Serial Number : N/A ESM Serial Number : N/A Enclosure Zoning Mode : N/A Partner Device Id : 65 Inquiry data : Vendor Identification : LSI CORP Product Identification : SAS2X36 Product Revision Level : 0718 Vendor Specific : x36-55.7.24.1 Number of Voltage Sensors :2 Voltage Sensor :0 Voltage Sensor Status :OK Voltage Value :5020 milli volts Voltage Sensor :1 Voltage Sensor Status :OK Voltage Value :11820 milli volts Number of Power Supplies : 2 Power Supply : 0 Power Supply Status : OK Power Supply : 1 Power Supply Status : OK Number of Fans : 3 Fan : 0 Fan Speed :Low Speed Fan Status : OK Fan : 1 Fan Speed :Low Speed Fan Status : OK Fan : 2 Fan Speed :Low Speed Fan Status : OK Number of Temperature Sensors : 1 Temp Sensor : 0 Temperature : 48 Temperature Sensor Status : OK Number of Chassis : 1 Chassis : 0 Chassis Status : OK Enclosure 1: Device ID : 65 Number of Slots : 28 Number of Power Supplies : 2 Number of Fans : 3 Number of Temperature Sensors : 1 Number of Alarms : 1 Number of SIM Modules : 0 Number of Physical Drives : 28 Status : Normal Position : 1 Connector Name : Port A Enclosure type : SES VendorId is LSI CORP and Product Id is SAS2X36 VendorID and Product ID didnt match FRU Part Number : N/A Enclosure Serial Number : N/A ESM Serial Number : N/A Enclosure Zoning Mode : N/A Partner Device Id : 36 Inquiry data : Vendor Identification : LSI CORP Product Identification : SAS2X36 Product Revision Level : 0718 Vendor Specific : x36-55.7.24.1 Number of Voltage Sensors :2 Voltage Sensor :0 Voltage Sensor Status :OK Voltage Value :5020 milli volts Voltage Sensor :1 Voltage Sensor Status :OK Voltage Value :11760 milli volts Number of Power Supplies : 2 Power Supply : 0 Power Supply Status : OK Power Supply : 1 Power Supply Status : OK Number of Fans : 3 Fan : 0 Fan Speed :Low Speed Fan Status : OK Fan : 1 Fan Speed :Low Speed Fan Status : OK Fan : 2 Fan Speed :Low Speed Fan Status : OK Number of Temperature Sensors : 1 Temp Sensor : 0 Temperature : 47 Temperature Sensor Status : OK Number of Chassis : 1 Chassis : 0 Chassis Status : OK Enclosure 2: Device ID : 252 Number of Slots : 8 Number of Power Supplies : 0 Number of Fans : 0 Number of Temperature Sensors : 0 Number of Alarms : 0 Number of SIM Modules : 1 Number of Physical Drives : 0 Status : Normal Position : 1 Connector Name : Unavailable Enclosure type : SGPIO Failed in first Inquiry commnad FRU Part Number : N/A Enclosure Serial Number : N/A ESM Serial Number : N/A Enclosure Zoning Mode : N/A Partner Device Id : Unavailable Inquiry data : Vendor Identification : LSI Product Identification : SGPIO Product Revision Level : N/A Vendor Specific : Exit Code: 0x00 Now, notice that each slot 11 device shows an enclosure ID of 36, I think this is where the discrepancy happens. One should be 36. But the other should be on enclosure 65. Drives in slot 11: Enclosure Device ID: 36 Slot Number: 11 Drive's postion: DiskGroup: 5, Span: 0, Arm: 1 Enclosure position: 0 Device Id: 48 WWN: Sequence Number: 11 Media Error Count: 0 Other Error Count: 0 Predictive Failure Count: 0 Last Predictive Failure Event Seq Number: 0 PD Type: SATA Raw Size: 2.728 TB [0x15d50a3b0 Sectors] Non Coerced Size: 2.728 TB [0x15d40a3b0 Sectors] Coerced Size: 2.728 TB [0x15d400000 Sectors] Firmware state: Online, Spun Up Is Commissioned Spare : YES Device Firmware Level: A5C0 Shield Counter: 0 Successful diagnostics completion on : N/A SAS Address(0): 0x5003048000ee8a53 Connected Port Number: 1(path0) Inquiry Data: MJ1311YNG6YYXAHitachi HDS5C3030ALA630 MEAOA5C0 FDE Enable: Disable Secured: Unsecured Locked: Unlocked Needs EKM Attention: No Foreign State: None Device Speed: 6.0Gb/s Link Speed: 6.0Gb/s Media Type: Hard Disk Device Drive Temperature :30C (86.00 F) PI Eligibility: No Drive is formatted for PI information: No PI: No PI Drive's write cache : Disabled Drive's NCQ setting : Enabled Port-0 : Port status: Active Port's Linkspeed: 6.0Gb/s Drive has flagged a S.M.A.R.T alert : No Enclosure Device ID: 36 Slot Number: 11 Drive's postion: DiskGroup: 19, Span: 0, Arm: 1 Enclosure position: 0 Device Id: 19 WWN: Sequence Number: 4 Media Error Count: 0 Other Error Count: 0 Predictive Failure Count: 0 Last Predictive Failure Event Seq Number: 0 PD Type: SATA Raw Size: 2.728 TB [0x15d50a3b0 Sectors] Non Coerced Size: 2.728 TB [0x15d40a3b0 Sectors] Coerced Size: 2.728 TB [0x15d400000 Sectors] Firmware state: Online, Spun Up Is Commissioned Spare : NO Device Firmware Level: A580 Shield Counter: 0 Successful diagnostics completion on : N/A SAS Address(0): 0x5003048000ee8e53 Connected Port Number: 0(path0) Inquiry Data: MJ1313YNG1VA5CHitachi HDS5C3030ALA630 MEAOA580 FDE Enable: Disable Secured: Unsecured Locked: Unlocked Needs EKM Attention: No Foreign State: None Device Speed: 6.0Gb/s Link Speed: 6.0Gb/s Media Type: Hard Disk Device Drive Temperature :30C (86.00 F) PI Eligibility: No Drive is formatted for PI information: No PI: No PI Drive's write cache : Disabled Drive's NCQ setting : Enabled Port-0 : Port status: Active Port's Linkspeed: 6.0Gb/s Drive has flagged a S.M.A.R.T alert : No Update 06/28/12: I finally have some new information about (what we think) the root cause of this problem so I thought I would share. After getting in contact with a very knowledgeable Supermicro tech, they provided us with a tool called Xflash (doesn't appear to be readily available on their FTP). When we gathered some information using this utility, my colleague found something very strange: root@mogile2 test]# ./xflash.dat -i get avail Initializing Interface. Expander: SAS2X36 (SAS2x36) 1) SAS2X36 (SAS2x36) (50030480:00EE917F) (0.0.0.0) 2) SAS2X36 (SAS2x36) (50030480:00E9D67F) (0.0.0.0) 3) SAS2X36 (SAS2x36) (50030480:0112D97F) (0.0.0.0) This lists the connected enclosures. You see the 3 connected (we have since added a 3rd and a 4th which is not yet showing up) with their respective SAS address / WWN (50030480:00EE917F). Now we can use this address to get information on the individual enclosures: [root@mogile2 test]# ./xflash.dat -i 5003048000EE917F get exp Initializing Interface. Expander: SAS2X36 (SAS2x36) Reading the expander information.......... Expander: SAS2X36 (SAS2x36) B3 SAS Address: 50030480:00EE917F Enclosure Logical Id: 50030480:0000007F IP Address: 0.0.0.0 Component Identifier: 0x0223 Component Revision: 0x05 [root@mogile2 test]# ./xflash.dat -i 5003048000E9D67F get exp Initializing Interface. Expander: SAS2X36 (SAS2x36) Reading the expander information.......... Expander: SAS2X36 (SAS2x36) B3 SAS Address: 50030480:00E9D67F Enclosure Logical Id: 50030480:0000007F IP Address: 0.0.0.0 Component Identifier: 0x0223 Component Revision: 0x05 [root@mogile2 test]# ./xflash.dat -i 500304800112D97F get exp Initializing Interface. Expander: SAS2X36 (SAS2x36) Reading the expander information.......... Expander: SAS2X36 (SAS2x36) B3 SAS Address: 50030480:0112D97F Enclosure Logical Id: 50030480:0112D97F IP Address: 0.0.0.0 Component Identifier: 0x0223 Component Revision: 0x05 Did you catch it? The first 2 enclosures logical ID is partially masked out where the 3rd one (which has a correct unique enclosure ID) is not. We pointed this out to Supermicro and were able to confirm that this address is supposed to be set during manufacturing and there was a problem with a certain batch of these enclosures where the logical ID was not set. We believe that the RAID controller is determining the ID based on the logical ID and since our first 2 enclosures have the same logical ID, they get the same enclosure ID. We also confirmed that 0000007F is the default which comes from LSI as an ID. The next pointer that helps confirm this could be a manufacturing problem with a run of JBODs is the fact that all 6 of the enclosures that have this problem begin with 00E. I believe that between 00E8 and 00EE Supermicro forgot to program the logical IDs correctly and neglected to recall or fix the problem post production. Fortunately for us, there is a tool to manage the WWN and logical ID of the devices from Supermicro: ftp://ftp.supermicro.com/utility/ExpanderXtools_Lite/. Our next step is to schedule a shutdown of these JBODs (after data migration) and reprogram the logical ID and see if it solves the problem. Update 06/28/12 #2: I just discovered this FAQ at Supermicro while Google searching for "lsi 0000007f": http://www.supermicro.com/support/faqs/faq.cfm?faq=11805. I still don't understand why, in the last several times we contacted Supermicro, they would have never directed us to this article :\

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