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  • Sorting tab delimited text file based on multiple columns in natural way [duplicate]

    - by Vignesh
    This question already has an answer here: Sorting a column of CSV file resulting in 1123 appearing before 232 1 answer I am trying to sort a file based on all two columns Eg: chr19 1070019 1070020 chr16 869712 869713 chr1 1378131 1378132 chr12 189386 189387 chr4 254941 254942 chr16 1476500 1476501 chr2 1476810 1476811 chr19 313283 313284 chr17 595817 595818 chr18 656897 656898 chr19 1061829 1061830 I Tried sort -t $\t -k1,1 2,2 <filename> but doesn't work. I want the output to be sorted by first column and second column based on first column. I want to do a natural sort. Not lexical sorting. Eg: chr1 1378131 1378132 chr2 1476810 1476811 chr4 254941 254942 chr12 189386 189387 chr16 869712 869713 chr16 1476500 1476501 chr17 595817 595818 chr18 656897 656898 chr19 313283 313284 chr19 1061829 1061830 chr19 1070019 1070020 Anyone any idea?

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  • Can I make valgrind ignore glibc libraries?

    - by Jack
    Is it possible to tell valgrind to ignore some set of libraries? Specifically glibc libraries.. Actual Problem: I have some code that runs fine in normal execution. No leaks etc. When I try to run it through valgrind, I get core dumps and program restarts/stops. Core usually points to glibc functions (usually fseek, mutex etc). I understand that there might be some issue with incompatible glibc / valgrind version. I tried various valgrind releases and glibc versions but no luck. Any suggestions?

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  • Still don't understand file upload-folder permissions

    - by Camran
    I have checked out articles and tutorials. I don't know what to do about the security of my picture upload-folder. It is pictures for classifieds which should be uploaded to the folder. This is what I want: Anybody may upload images to the folder. The images will be moved to another folder, by another php-code later on (automatic). Only I may manually remove them, as well as another php file on the server which automatically empties the folder after x-days. What should I do here? The images are uploaded via a php-upload script. This script checks to see if the extension of the file is actually a valid image-file. When I try this: chmod 755 images the images wont be uploaded. But like this it works: chmod 777 images But 777 is a security risk right? Please give me detailed information... The Q is, what to do to solve this problem, not info about what permissions there are etc etc... Thanks If you need more info let me know...

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  • Update and Install problems with Eclipse

    - by THeK3nger
    When I try to install/update any plugin from Help - Install New Software I receive error messages like this: No repository found at http://download.eclipse.org/releases/galileo. or Unable to connect to repository http://pydev.org/updates/site.xml Invalid argument This happens with all Eclipse versions. I use Eclipse on Debian Sid.

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  • Custom script in .screenrc

    - by benoror
    Hi. I made a script that spawns a remote shell or runs a local shell whether it's on the current machine or not: #!/bin/bash # By: benoror <[email protected]> # # spawns a remote shell or runs a local shell whether it's on the current machine or not # $1 = hostname if [ "$(hostname)" == "$1" ]; then bash else ssh "$1.local" fi For example, if I'm on server1: ./spawnshell.sh server1 -> runs bash ./spawnshell.sh server2 -> ssh to server2.local I want that script to run automatically in separate tabs in GNU Screen, but I can't make it run, my .screenrc: ... screen -t "@server1" 1 exec /home/benoror/scripts/spawnshell.sh server1 screen -t "@server2" 2 exec /home/benoror/scripts/spawnshell.sh server2 ... But it doesn't works, I've tried without 'exec', with -X option and a lot more. Any ideas ?

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  • Skip kernel module at boot

    - by Gris
    Hello. There is a broken kernel module, due to which I can not even load the OS, so I can not delete or fix it. Is it possible to skip this module at boot, using the kernel's parameters or something? Thanks.

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  • Bash script function return value problem

    - by Eedoh
    Hi to all. Can anyone help me return the correct value from a bash script function? Here's my function that should return first (and only) line of the file passed as an argument: LOG_FILE_CREATION_TIME() { return_value=`awk 'NR==1' $1` return return_value } And here's my call of that function in the other script: LOG_FILE_CREATION_TIME "logfile" timestamp=$? echo "Timestamp = $timestamp" I always get some random values with this code. If, for example, there's a value of 62772031 in the "logfile", I get Timestamp = 255 as an output. For some other values in the file, I get other random values as a return value, never the correct one. Any ideas?

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  • Why are gettimeofday() intervals occasionally negative?

    - by Andres Jaan Tack
    I have an experimental library whose performance I'm trying to measure. To do this, I've written the following: struct timeval begin; gettimeofday(&begin, NULL); { // Experiment! } struct timeval end; gettimeofday(&end, NULL); // Print the time it took! std::cout << "Time: " << 100000 * (end.tv_sec - begin.tv_sec) + (end.tv_usec - begin.tv_usec) << std::endl; Occasionally, my results include negative timings, some of which are nonsensical. For instance: Time: 226762 Time: 220222 Time: 210883 Time: -688976 What's going on?

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  • Problem with .release behavior in file_operations

    - by Yannick
    Hello, I'm dealing with a problem in a kernel module that get data from userspace using a /proc entry. I set open/write/release entries for my own defined /proc entry, and manage well to use it to get data from userspace. I handle errors in open/write functions well, and they are visible to user as open/fopen or write/fwrite/fprintf errors. But some of the errors can only be checked at close (because it's the time all the data is available). In these cases I return something different than 0, which I supposed to be in some way the value 'close' or 'fclose' will return to user. But whatever the value I return my close behave like if all is fine. To be sure I replaced all the release() code by a simple 'return(-1);' and wrote a program that open/write/close the /proc entry, and prints the close return value (and the errno). It always return '0' whatever the value I give. Behavior is the same with 'fclose', or by using shell mechanism (echo "..." /proc/my/entry). Any clue about this strange behavior that is not the one claimed in many tutorials I found? BTW I'm using RHEL5 kernel (2.6.18, redhat modified), on a 64bit system. Thanks. Regards, Yannick

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  • Nginx logic (if cookie set, redirect here...) Is it possible?

    - by Matthew Steiner
    So, I have a pretty basic need, but I can't figure out if it's even possible, much less how to do it. I have a main page that anyone can see. Most of the rest of the application can be seen only if logged in (hence, a "set cookie"). So I was thinking, as long as they don't have a cookie set, they can just see a cached version of nginx. I can get it caching with this: proxy_cache STATIC; proxy_cache_valid 200 1d; proxy_cache_use_stale error timeout invalid_header updating http_500 http_502 http_503 http_504; And it helps a ton. (instead of 15 requests per second it gets over 1000). Now I just need some sort of "server logic" to say only serve the cached page if they have no cookie, otherwise, load the dynamic page (which will automatically redirect them into the app). Any ideas?

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  • Bash: infinite sleep

    - by watain
    I use startx to start X which will evaluate my .xinitrc. In my .xinitrc I start my window manager using /usr/bin/mywm. Now, if I kill my WM (in order to f.e. test some other WM), X will terminate too because the .xinitrc script reached EOF. So I added this at the end of my .xinitrc: while true; do sleep 10000; done This way X won't terminate if I kill my WM. Now my question: how can I do an infinite sleep instead of looping sleep? Is there a command which will kinda like freeze the script? Best regards

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  • ~/.profile does not run on startup

    - by pocoa
    I want to run some scripts at system startup, so in ~/.profile file, I've added: WORKSPACE="~/Development/workspace" alias workspace="cd $WORKSPACE" So I want this "workspace" alias to be available after the startup. Maybe it's not the right place to define these variables.

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  • How do you return stolen packets back to Netfilter

    - by meg18019
    Let's say I have intercepted a packet from Netfilter and subsequently returned NF_STOLEN. At some point I want to re-inject that packet back to, in this case, the TCP stream it came from. I want to do this from Kernel space. So far I have been unable to find a way to do this. Thanks for the help.

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  • Command key to Meta in Emacs

    - by dimvar
    I'm using a Mac keyboard on Ubuntu at work. What do I add to my .emacs file to turn the command key to Meta? I tried (setq mac-command-key-is-meta t) and (setq mac-command-key 'meta) and neither works.

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  • Shell - How to find directory of some command?

    - by Gabriel L. Oliveira
    I know that when you are on shell, the only commands that can be used are the ones that can be found on some directory set on PATH. Even I don't know how to see what dirs are on my PATH variable (and this is another good question that could be answered), what I'd like to know is: I come to shell and write: $ lshw I want to know a command on shell that can tell me WHERE this command is located. In other words, where this "executable file" is located? Something like: $ location lshw /usr/bin Anyone?

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  • Gtk equivalent for winforms BindingSource

    - by AvatarOfChronos
    Does anybody out there know of a Gtk equivalent for a System.Windows.Forms BindingSource? I'm trying to get a windows based project to work under a gtk environment and can't use the Windows.Forms dll for this. So does anybody know of a BindingSource replacement either in mono or a third party dll? (I've looked at the gtk-databindings project didn't seem to have what i need)

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  • First Come, First Served process scheduling

    - by user253530
    i have 4 processes: p1 - bursts 5, priority: 3 p2 - bursts 8, priority: 2 p3 - bursts 12, priority: 2 p4 - bursts 6, priority: 1 Assuming that all processes arrive at the scheduler at the same time what is the average response time and average turnaround time? For FCFS is it ok to have them in the order p1, p2, p3, p4 in the execution queue?

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  • User to kernel mode big picture?

    - by fsdfa
    I've to implement a char device, a LKM. I know some basics about OS, but I feel I don't have the big picture. In a C programm, when I call a syscall what I think it happens is that the CPU is changed to ring0, then goes to the syscall vector and jumps to a kernel memmory space function that handle it. (I think that it does int 0x80 and in eax is the offset of the syscall vector, not sure). Then, I'm in the syscall itself, but I guess that for the kernel is the same process that was before, only that it is in kernel mode, I mean the current PCB is the process that called the syscall. So far... so good?, correct me if something is wrong. Others questions... how can I write/read in process memory?. If in the syscall handler I refer to address, say, 0xbfffffff. What it means that address? physical one? Some virtual kernel one?

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  • calling c function from assembly

    - by void
    I'm trying to use a function in assembly in a C project, the function is supposed to call a libc function let's say printf() but I keep getting a segmentation fault. In the .c file I have the declaration of the function let's say int do_shit_in_asm() In the .asm file I have .extern printf .section .data printtext: .ascii "test" .section .text .global do_shit_in_asm .type do_shit_in_asm, @function do_shit_in_asm: pushl %ebp movl %esp, %ebp push printtext call printf movl %ebp, %esp pop %ebp ret Any pointers would be appreciated. as func.asm -o func.o gcc prog.c func.o -o prog

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  • Running ssh-keygen without human interaction?

    - by Marco
    Would it be possible to run ssh-keygen without human interaction? I have a shell script that takes care of server deployment from start to finish, but ssh-keygen is the only remaining piece that still requires my input. Would it be possible to feed the parameters to it? Or is there something similar to debconf-set-selections that could be used for this? *running Debian

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