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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Visual Basic Express 2008 Help

    - by khalidfazeli
    I have been given a task to: Develop a program where a child will be presented with picture of a fruit (one of five possible fruit) on the screen at the click of a start button. The child will then try to recognise the fruit and write its name in a specified place on the screen. On the click of a check button the name of the fruit written by the child will be checked by your program and if correct will reward the child with a suitable message. If the name presented by the child is not correct, a suitable message should be presented on a red background with the correct name of the fruit included in the message. so far I have managed to create a form with 5 different fruit pictures and a text box below them. a button at the bottom of the form then checks the results and presents a message box to tell them if they have passed or failed. Private Sub btnResults_Click(ByVal sender As System.Object, ByVal e As System.EventArgs) Handles btnResults.Click If txtApple.Text = "APPLE" And txtOrange.Text = "ORANGES" And txtStrawberry.Text = "STRAWBERRIES" And txtGrapes.Text = "GRAPES" And txtBanana.Text = "BANANAS" Then MsgBox("Congratulations! you got it all right!", MsgBoxStyle.OkOnly) End Else MsgBox("Incorrect, please try again", MsgBoxStyle.OkOnly) End End If End Sub but I can't get it to randomise the picture of the fruit, so it only displays one fruit at a time and checks against it. Any help is appreciated. Thanks

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  • jQuery is it possible to concatenate two selector variables?

    - by Kris Hollenbeck
    Lets say I have two variables defining separate selectors, for example... var parent = $('.parent'); var child = $('.child'); And I want to create a something like the following... $(parent + child).click(); Which should be equivalent to doing this (if it was correct syntax)... $('.parent .child').click(); This may not be best practice, however I am curious if it is possible. Thanks for your help in advance.

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  • javascript filter nested object based on key value

    - by murray3
    I wish to filter a nested javascript object by the value of the "step" key: var data = { "name": "Root", "step": 1, "id": "0.0", "children": [ { "name": "first level child 1", "id": "0.1", "step":2, "children": [ { "name": "second level child 1", "id": "0.1.1", "step": 3, "children": [ { "name": "third level child 1", "id": "0.1.1.1", "step": 4, "children": []}, { "name": "third level child 2", "id": "0.1.1.2", "step": 5, "children": []} ]}, ]} ] }; var subdata = data.children.filter(function (d) { return (d.step <= 2)}); This just returns the unmodified nested object, even if I put value of filter to 1. does .filter work on nested objects or do I need to roll my own function here, advise and correct code appreciated. cjm

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  • SQL SERVER FOR XML SYNTAX

    - by Raj73
    How can I get an output as follows using FOR XML / sql query. I am not sure how I can get the Column Values as Elements instead of the tables' column Names. I am using sql server 2005 I HAVE TABLE SCEMA AS FOLLOWS CREATE TABLE PARENT ( PID INT, PNAME VARCHAR(20) ) CREATE TABLE CHILD ( PID INT, CID INT, CNAME VARCHAR(20) ) CREATE TABLE CHILDVALUE ( CID INT, CVALUE VARCHAR(20) ) INSERT INTO PARENT VALUES (1, 'SALES1') INSERT INTO PARENT VALUES (2, 'SALES2') INSERT INTO CHILD VALUES (1, 1, 'FOR01') INSERT INTO CHILD VALUES (1, 2, 'FOR02') INSERT INTO CHILD VALUES (2, 3, 'FOR03') INSERT INTO CHILD VALUES (2, 4, 'FOR04') INSERT INTO CHILDVALUE VALUES (1, '250000') INSERT INTO CHILDVALUE VALUES (2, '400000') INSERT INTO CHILDVALUE VALUES (3, '500000') INSERT INTO CHILDVALUE VALUES (4, '800000') The Output I am looking for is as follows <SALE1> <FOR01>250000</FOR01> <FOR02>400000</FOR02> </SALE1> <SALE2> <FOR03>500000</FOR03> <FOR04>800000</FOR04> </SALE2>

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  • How to Implement Custom List View for the list Items in Android Application

    - by avadhani
    I had a problem with the list view having both parent list and the child list of the list activity(implemented through database query). I wish to show them differing their properties by changing the text style (parent list items are in bold, child list items are in normal style). The following is the code from which all the child and parent list items having the same style(bold): String sql = "SELECT Parentid,Childid,Name from (select com.Parentid, com.Childid, com.Name from table1 mem inner join table2 cd on mem.column1=cd.column1 inner join table3 com on com.childid = mem.childid where Parentid is NULL UNION SELECT com.Parentid, com.Childid,com.Name from table1 mem inner join table3 com on com.childid = mem.childid inner join table2 cd on mem.column1=cd.column1 where Parentid is NOT NULL) a group by Parentid, Childid;"; Cursor cdata = myDbHelper.getView(sql); and the List Adapter is: private static final String fields[] = {"Name"}; int[] names = new int[] {R.id.name}; SimpleCursorAdapter adapter2 = new SimpleCursorAdapter(this,R.layout.clientlist1, cdata, fields,names ); and the clientlist.xml is: <LinearLayout xmlns:android="http://schemas.android.com/apk/res/android" android:orientation="horizontal" android:layout_width="fill_parent" android:layout_height="fill_parent" android:id="@+id/MainLayout" android:padding="5px"> <TextView android:id="@+id/name" android:layout_alignParentRight="true" android:layout_width="fill_parent" android:layout_height="wrap_content" android:textSize="12sp" android:textColor="#104082" android:textStyle="bold" android:layout_weight="1" /> From this i am getting the list having the complete list having both parent and child list items in a single list view. I wish to differ in their text style(bold, normal) for parent and child items respectively. Please help me with the code/links. Thanks a lot in advance.

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  • How do I restrict foreign keys choices to related objects only in django

    - by Jeff Mc
    I have a two way foreign relation similar to the following class Parent(models.Model): name = models.CharField(max_length=255) favoritechild = models.ForeignKey("Child", blank=True, null=True) class Child(models.Model): name = models.CharField(max_length=255) myparent = models.ForeignKey(Parent) How do I restrict the choices for Parent.favoritechild to only children whose parent is itself? I tried class Parent(models.Model): name = models.CharField(max_length=255) favoritechild = models.ForeignKey("Child", blank=True, null=True, limit_choices_to = {"myparent": "self"}) but that causes the admin interface to not list any children.

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  • Window parent not working in IE 8

    - by archana roy
    I have a parent page and a child page. By using window.opener.parent property,I am able to read the parent page content and display it in the child page.(There is a PREVIEW button on parent page,on click of which the child page opens up as a popup and displays the content of parent page controls.) This functionality was working fine in IE7/Mozilla/IE6 but I am unable to locate why its not workin with IE8. Can anyone please help?

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  • What if a large number of objects are passed to my SwingWorker.process() method?

    - by Trejkaz
    I just found an interesting situation. Suppose you have some SwingWorker (I've made this one vaguely reminiscent of my own): public class AddressTreeBuildingWorker extends SwingWorker<Void, NodePair> { private DefaultTreeModel model; public AddressTreeBuildingWorker(DefaultTreeModel model) { } @Override protected Void doInBackground() { // Omitted; performs variable processing to build a tree of address nodes. } @Override protected void process(List<NodePair> chunks) { for (NodePair pair : chunks) { // Actually the real thing inserts in order. model.insertNodeInto(parent, child, parent.getChildCount()); } } private static class NodePair { private final DefaultMutableTreeNode parent; private final DefaultMutableTreeNode child; private NodePair(DefaultMutableTreeNode parent, DefaultMutableTreeNode child) { this.parent = parent; this.child = child; } } } If the work done in the background is significant then things work well - process() is called with relatively small lists of objects and everything is happy. Problem is, if the work done in the background is suddenly insignificant for whatever reason, process() receives a huge list of objects (I have seen 1,000,000, for instance) and by the time you process each object, you have spent 20 seconds on the Event Dispatch Thread, exactly what SwingWorker was designed to avoid. In case it isn't clear, both of these occur on the same SwingWorker class for me - it depends on the input data, and the type of processing the caller wanted. Is there a proper way to handle this? Obviously I can intentionally delay or yield the background processing thread so that a smaller number might arrive each time, but this doesn't feel like the right solution to me.

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  • unix shell, redirect output but keep on stdin

    - by Mike
    I'd like to have a shell script redirect stdout of a child process in the following manner Redirect stdout to a file Display the output of the process in real time I know I could do something like #!/bin/sh ./child > file cat file But that would not display stdout in real time. For instance, if the child was #!/bin/sh echo 1 sleep 1 echo 2 The user would see "1" and "2" printed at the same time

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  • Saving JQuery Draggable Sitemap Values Correctly

    - by mdolon
    I am trying to implement Boagworld's Sitemap tutorial, however I am running into difficulty trying to correctly save the child/parent relationships. The HTML is as follows, however populated with other items as well: <input type="hidden" name="sitemap-order" id="sitemap-order" value="" /> <ul id=”sitemap”> <li id="1"> <dl> <dt><a href=”#”>expand/collapse</a> <a href=”#”>Page Title</a></dt> <dd>Text Page</dd> <dd>Published</dd> <dd><a href=”#”>delete</a></dd> </dl> <ul><!–child pages–></ul> </li> </ul> And here is the JQuery code: $('#sitemap li').prepend('<div class="dropzone"></div>'); $('#sitemap li').draggable({ handle: ' > dl', opacity: .8, addClasses: false, helper: 'clone', zIndex: 100 }); var order = ""; $('#sitemap dl, #sitemap .dropzone').droppable({ accept: '#sitemap li', tolerance: 'pointer', drop: function(e, ui) { var li = $(this).parent(); var child = !$(this).hasClass('dropzone'); //If this is our first child, we'll need a ul to drop into. if (child && li.children('ul').length == 0) { li.append('<ul/>'); } //ui.draggable is our reference to the item that's been dragged. if (child) { li.children('ul').append(ui.draggable); }else { li.before(ui.draggable); } //reset our background colours. li.find('dl,.dropzone').css({ backgroundColor: '', backgroundColor: '' }); li.find('.dropzone').css({ height: '8px', margin: '0' }); // THE PROBLEM: var parentid = $(this).parent().attr('id'); menuorder += ui.draggable.attr('id')+'=>'+parentid+','; $("#sitemap-order").val(order); }, over: function() { $(this).filter('dl').css({ backgroundColor: '#ccc' }); $(this).filter('.dropzone').css({ backgroundColor: '#aaa', height: '30px', margin: '5px 0'}); }, out: function() { $(this).filter('dl').css({ backgroundColor: '' }); $(this).filter('.dropzone').css({ backgroundColor: '', height: '8px', margin: '0' }); } }); When moving items into the top-level (without parents), the parentid value I get is of the first list item (the parent container), so I can never remove the parent value and have a top-level item. Is there a no-brainer answer that I'm just not seeing right now? Any help is appreciated.

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  • jscrollpane block scrolling parent

    - by sabithpocker
    Can i make jscrollpne such that parent pane doesnot scroll even when child scroll has reached its bottom. Now when child scrolling reaches bottom scrolling of parent occurs. I want parent to scroll only when mouse is out of child scrollpane.

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  • How do I make this Query against EF Efficient?

    - by dudeNumber4
    Using EF4. Assume I have this: IQueryable<ParentEntity> qry = myRepository.GetParentEntities(); Int32 n = 1; What I want to do is this, but EF can't compare against null. qry.Where( parent => parent.Children.Where( child => child.IntCol == n ) != null ) What works is this, but the SQL it produces (as you would imagine) is pretty inefficient: qry.Where( parent => parent.Children.Where( child => child.IntCol == n ).FirstOrDefault().IntCol == n ) How can I do something like the first comparison to null that won't be generating nested queries and so forth?

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  • How to remove an element from opener window viewsource using javascript

    - by spj
    Hi Step 1 I've two screens one is parent and the other one is child. On click of a button in the parent window the child popup will open. Step 2 On click of a button in child i'm displaying the html(viewsource) of parent window in a textbox(.net) and holding in a hidden variable hdnSource too. Step 3 I've 4 checkboxes in the child window. If the checkbox is not checked, then that part of html should be removed. eg: cbxPersonal, cbxProfessional if cbxProfessional is unchecked I should remove divProfessional from html which is in hdnSource and display in the textbox Can anyone help me to do the 3rd part of coding. Since the html is in the variable, I'm not able to find the div with document.getElementById

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  • Return parent of node in Binary Tree

    - by user188995
    I'm writing a code to return the parent of any node, but I'm getting stuck. I don't want to use any predefined ADTs. //Assume that nodes are represented by numbers from 1...n where 1=root and even //nos.=left child and odd nos=right child. public int parent(Node node){ if (node % 2 == 0){ if (root.left==node) return root; else return parent(root.left); } //same case for right } But this program is not working and giving wrong results. My basic algorithm is that the program starts from the root checks if it is on left or on the right. If it's the child or if the node that was queried else, recurses it with the child.

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  • getting IllegalAccessException when accessing a protected method from parent from inner class

    - by EnToutCas
    I got a very weird problem and a weird solution: class Parent { protected void aProtectedMethod() { doSomething(); } } class Child extends Parent { void anotherMethod() { new SomeInterface() { public void interfaceMethod() { aProtectedMethod(); } }; } } When child.anotherMethod() is run, I got IllegalAccessException at myProtectedMethod(), saying my inner class doesn't have access to the Parent class... However, if I add: protected void aProtectedMethod() { super.aProtectedMethod(); } in my Child class, everything is fine... I wonder why this is?

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  • DOM class injection in PHP

    - by Adam Kiss
    idea Via jQuery, I was able to mark all :first-child and :last-child elements in document (well, almost all :)) with class first which could I later style (i.e. first li in ul#navigation would be easily adressable as ul#navigation .first). I used following code: var $f = $('*:first-child') $f.addClass('first'); var $l = $('body *:last-child') $l.addClass('last'); question Now, my question is if it's possible to do the same via php, so non-JS users/gadgets could have the same effects and additional styling and also it would be less overkill on browser. So, is it possible to capture output, parse it as html and inject this class easily in php?

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  • python list/dict property best practice

    - by jterrace
    I have a class object that stores some properties that are lists of other objects. Each of the items in the list has an identifier that can be accessed with the id property. I'd like to be able to read and write from these lists but also be able to access a dictionary keyed by their identifier. Let me illustrate with an example: class Child(object): def __init__(self, id, name): self.id = id self.name = name class Teacher(object): def __init__(self, id, name): self.id = id self.name = name class Classroom(object): def __init__(self, children, teachers): self.children = children self.teachers = teachers classroom = Classroom([Child('389','pete')], [Teacher('829','bob')]) This is a silly example, but it illustrates what I'm trying to do. I'd like to be able to interact with the classroom object like this: #access like a list print classroom.children[0] #append like it's a list classroom.children.append(Child('2344','joe')) #delete from like it's a list classroom.children.pop(0) But I'd also like to be able to access it like it's a dictionary, and the dictionary should be automatically updated when I modify the list: #access like a dict print classroom.childrenById['389'] I realize I could just make it a dict, but I want to avoid code like this: classroom.childrendict[child.id] = child I also might have several of these properties, so I don't want to add functions like addChild, which feels very un-pythonic anyway. Is there a way to somehow subclass dict and/or list and provide all of these functions easily with my class's properties? I'd also like to avoid as much code as possible.

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  • One-liner javascript to collect values from object graph?

    - by Kevin Pauli
    Given the following object graph: { "children": [ { "child": { "pets": [ { "pet": { "name": "fido" } }, { "pet": { "name": "fluffy" } } ] } }, { "child": { "pets": [ { "pet": { "name": "spike" } } ] } } ] } What would be a nice one-liner (or two) to collect the names of my grandchildren's pets? The result should be ["fido", "fluffy", "spike"] I don't want to write custom methods for this... I'm looking for something like the way jQuery works in selecting dom nodes, where you can just give it a CSS-like path and it collects them up for you. I would expect the expression path to look something like "children child pets pet name"

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  • Use JQuery to check a checkbox in a parent list-item?

    - by Daniel O'Connor
    Hey Everyone, I'm brand new to Javascript and JQuery, so I've been reading up on it and am trying to check (and set inactive) a checkbox in a parent list-item when one of the children are checked. If this doesn't make any sense, take a look at the list structure. <ul> <li><input type="checkbox" name="items[]" value="88712003" id="88712003" /> Parent 1</li> <li><input type="checkbox" name="items[]" value="88712003" id="88712003" /> Parent 2 <ul> <li><input type="checkbox" name="items[]" value="21312341" id="21312341" /> Child 1</li> <li><input type="checkbox" name="items[]" value="21312341" id="21312341" /> Child 2</li> </ul> </li> <li><input type="checkbox" name="items[]" value="88712003" id="88712003" /> Parent 3</li> <li><input type="checkbox" name="items[]" value="88712003" id="88712003" /> Parent 4</li> </ul> If Child 1 or Child 2 is checked, I want the input in Parent 2 to be checked and set inactive. I've started working on it, but got stuck here: $(function(){ $('.child').click(function() { $(this).parent().parent().parent().toggle(); }); }); As you can see, I didn't make it far. Any help would be appreciated. Thanks!

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  • Assign values from same table

    - by Reddy S R
    I have a database table with parent child relationships between different rows. 1 parent can have any number of children. Children do not have children. I want to copy 'Message' from 'Parent Category' to child categories. CategoryID Name Value Message ParentID DeptId 1 Books 9 Specials 1 2 Music 7 1 3 Paperback 25 1 1 4 PDFs 26 1 2 5 CDs 35 2 1 If that was sample data, Paperback should have Specials as it's Message after the query is run. I have gotten the child rows (the query runs very slow, don't know why), but how do I get the data and assign it to appropriate child rows? --@DeptId = 1 select * from Categories where ParentID in( select CategoryID from Categories where DeptID = @DeptId ) I would like to see a solution that would not use cursors. Thanks

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