drupal modules - Page 55

Loading, listing, and using R Modules and Functions in PL/R

- by Dave Jarvis

I am having difficulty with: Listing the R packages and functions available to PostgreSQL. Installing a package (such as Kendall) for use with PL/R Calling an R function within PostgreSQL Listing Available R Packages Q.1. How do you find out what R modules have been loaded? SELECT * FROM r_typenames(); That shows the types that are available, but what about checking if Kendall( X, Y ) is loaded? For example, the documentation shows: CREATE TABLE plr_modules ( modseq int4, modsrc text ); That seems to allow inserting records to dictate that Kendall is to be loaded, but the following code doesn't explain, syntactically, how to ensure that it gets loaded: INSERT INTO plr_modules VALUES (0, 'pg.test.module.load <-function(msg) {print(msg)}'); Q.2. What would the above line look like if you were trying to load Kendall? Q.3. Is it applicable? Installing R Packages Using the "synaptic" package manager the following packages have been installed: r-base r-base-core r-base-dev r-base-html r-base-latex r-cran-acepack r-cran-boot r-cran-car r-cran-chron r-cran-cluster r-cran-codetools r-cran-design r-cran-foreign r-cran-hmisc r-cran-kernsmooth r-cran-lattice r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-quadprog r-cran-robustbase r-cran-rpart r-cran-survival r-cran-vr r-recommended Q.4. How do I know if Kendall is in there? Q.5. If it isn't, how do I find out what package it is in? Q.6. If it isn't in a package suitable for installing with apt-get (aptitude, synaptic, dpkg, what have you), how do I go about installing it on Ubuntu? Q.7. Where are the installation steps documented? Calling R Functions I have the following code: EXECUTE 'SELECT ' 'regr_slope( amount, year_taken ),' 'regr_intercept( amount, year_taken ),' 'corr( amount, year_taken ),' 'sum( measurements ) AS total_measurements ' 'FROM temp_regression' INTO STRICT slope, intercept, correlation, total_measurements; This code calls the PostgreSQL function corr to calculate Pearson's correlation over the data. Ideally, I'd like to do the following (by switching corr for plr_kendall): EXECUTE 'SELECT ' 'regr_slope( amount, year_taken ),' 'regr_intercept( amount, year_taken ),' 'plr_kendall( amount, year_taken ),' 'sum( measurements ) AS total_measurements ' 'FROM temp_regression' INTO STRICT slope, intercept, correlation, total_measurements; Q.8. Do I have to write plr_kendall myself? Q.9. Where can I find a simple example that walks through: Loading an R module into PG. Writing a PG wrapper for the desired R function. Calling the PG wrapper from a SELECT. For example, would the last two steps look like: create or replace function plr_kendall( _float8, _float8 ) returns float as ' agg_kendall(arg1, arg2) ' language 'plr'; CREATE AGGREGATE agg_kendall ( sfunc = plr_array_accum, basetype = float8, -- ??? stype = _float8, -- ??? finalfunc = plr_kendall ); And then the SELECT as above? Thank you!

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