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  • R: convert data.frame columns from factors to characters

    - by Mike Dewar
    Hi, I have a data frame. Let's call him bob: > head(bob) phenotype exclusion GSM399350 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399351 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399352 3- 4- 8- 25- 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399353 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399354 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- GSM399355 3- 4- 8- 25+ 44+ 11b- 11c- 19- NK1.1- Gr1- TER119- I'd like to concatenate the rows of this data frame (this will be another question). But look: > class(bob$phenotype) [1] "factor" Bob's columns are factors. So, for example: > as.character(head(bob)) [1] "c(3, 3, 3, 6, 6, 6)" "c(3, 3, 3, 3, 3, 3)" [3] "c(29, 29, 29, 30, 30, 30)" I don't begin to understand this, but I guess these are indices into the levels of the factors of the columns (of the court of king caractacus) of bob? Not what I need. Strangely I can go through the columns of bob by hand, and do bob$phenotype <- as.character(bob$phenotype) which works fine. And, after some typing, I can get a data.frame whose columns are characters rather than factors. So my question is: how can I do this automatically? How do I convert a data.frame with factor columns into a data.frame with character columns without having to manually go through each column? Bonus question: why does the manual approach work?

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  • Strange ng-model behavior inside ng-repeat

    - by Mike Fisher
    I'm trying to build up a complex post request to run a report in my Angular app. I have a list of inputs all dynamically generated via an ng-repeat a simple version of my html looks like this. <div ng-repeat="filter in lists.filters"> <input type="checkbox" ng-model="report.options.filters[filter.value]['type']/> <input type="text" ng-model="report.options.filters[filter.value]['values']/> </div> ng-repeat is looping over this array [ {name: 'Advertisers', value: 'advertisers'}, {name: 'Sizes', value: 'sizes'}, {name: 'Campaign IDs', value: 'campaigns'}, {name: 'Creative IDs', value: 'creatives'}, {name: 'Publishers', value: 'publishers'}, {name: 'Placement IDs', value: 'placements'}, {name: 'Seller Types', value: 'seller_types'}, {name: 'Impression Types', value: 'impression_types'}, {name: 'Bid Types', value: 'bid_types'}, {name: 'Seller Members', value: 'seller_members'}, {name: 'Buyer Members', value: 'buyer_members'}, {name: 'Insertion Order Ids', value: 'insertion_orders'}, {name: 'Countries', value: 'countries'}, {name: 'Site Ids', value: 'sites'}, {name: 'Sources', value: 'sources'} ]; The JSON I'm sending back needs to be structured like this: "filters": { "state": "all", "campaigns": {type:"include", values":[1,2]}, "creatives": {type:"exclude","values":[1,2]}, "publishers": {"values":[1,2]}, "placements": {type:"exclude",values":[1,2]}, "advertisers": {"values":[1,2]}, "sizes": {"values":[1,2]}, "countries": {"values":[1,2]}, "insertion_orders": {"values":[1,2]}, "sites": {"values":[1,2]}, "bid_types": {"values":[1,2]}, "seller_types": {"values":[1,2]}, "impression_types": {"values":[1,2]}, "seller_members": {"values":[1,2]}, "buyer_members": {"values":[1,2]}, "sources": {"values":[1,2]} } When I do this Angular throws an error: 'Cannot set property 'values' of undefined' and 'Cannot set property 'type' of undefined' Yet if I do this (inside ng-repeat) <input type="text" ng-model="report.options.filters[filter.value]/> Or this outside of ng-repeat <input type="text" ng-model="report.options.filters[filter.value]['values']/> No errors are thrown and everything works fine. I'm positive that filter.value is defined and available on the scope even though Angular thinks it's not for some reason. I'm not quite sure what I'm doing wrong. Any help is much appreciated.

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  • Virtual Earth Shape Rendering Performance

    - by Mike
    I am overlaying a transparent image on my VEMap control by rendering it as a single VEShape. The shape changes sizes dynamically depeding on the zoom level of my map and can be as large as 4000*4000px. In older browsers such as IE6 and early versions of Firefox 2.x, map control performance degrades rapidly when my shape gets larger than 1500*1500px. The mouse pointer moves slowly and the map responds very slowly to events. I don't see this issue at all in newer browsers (IE7+). Are there any workarounds to boost performance of rendering a large shape for IE6 users?

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  • cocoa - converting a double to string

    - by Mike
    I have a double number and I would like to convert it to string. The number is, for example, something like 24.043333332154465777... but if I convert it to string using something like NSString *myString = [NSString stringWithFormat:@"%f", myDouble]; The string is just 24.043333 how do I get a full string the corresponds to the whole double number? What other methods do I have to convert this?

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  • JavaScript: Doing some stuff right before the user exits the page

    - by Mike
    I have seen some questions here regarding what I want to achieve and have based what I have so far on those answer. But there is a slight misbehavior that is still irritating me. What I have is sort of a recovery feature. Whenever you are typing text, the client sends a sync request to the server every 45 seconds. It does 2 things. First, it extends the lease the client has on the record (only one person may edit at one time) for another 60 seconds. Second, it sends the text typed so far to the server in case the server crashes, internet connection fails, etc. In that case, the next time the user enters our application, the user is notified that something has gone wrong and that some text was recovered. Think of Microsoft or OpenOffice recovery whenever they crash! Of course, if the user leaves the page willingly, the user does not need to be notified and as a result, the recovery is deleted. I do that final request via a beforeunload event. Everything went fine until I was asked to make a final adjustment... The same behavior you have here at stack overflow when you exit the editor... a confirm dialogue. This works so far, BUT, the confirm dialogue is shown twice. Here is the code. The event if (local.sync.autosave_textelement) { window.onbeforeunload = exitConfirm; } The function function exitConfirm() { var local = Core; if (confirm('blub?')) { local.sync.autosave_destroy = true; sync(false); return true; } else { return false; } }; Some problem irrelevant clarifications: Core is a global Object that contains a lot of variables that are used everywhere. sync makes an ajax request. The values are based on the values that the Core.sync object contains. The parameter determines if the call should be async (default) or sync.

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  • Modifying documents in memory in yaml-cpp

    - by Mike Mueller
    I want to read a YML document, filter it by modifying some nodes in memory, and then spit it back out with an emitter. The problem is that YAML::Node appears to be designed to be read-only. Is there a way to replace a node's value (with a scalar in this case) that I'm missing?

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  • Best way to do powerOf(int x, int n)?

    - by Mike
    So given x, and power, n, solve for X^n. There's the easy way that's O(n)... I can get it down to O(n/2), by doing numSquares = n/2; numOnes = n%2; return (numSquares * x * x + numOnes * x); Now there's a log(n) solution, does anyone know how to do it? It can be done recursively.

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  • Is there a POSIX syscall to resolve file system paths?

    - by Mike
    Is there a POSIX syscall to resolve filesystem paths? I have the CWD for a path, as well as the path to a file from that CWD. I can't use chdir to switch to the directory because I need to resolve paths from multiple threads simultaneously. I considered appending a / in between the CWD and the path, but for some reason it feels like that's hacky. Is that the proper way to resolve relative paths?

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  • I've got a ComboBox that's giving me grief in WPF using the MVVM pattern

    - by Mike
    Here's my code: <ComboBox Grid.Column="1" Grid.Row="9" ItemsSource="{Binding Path=PriorityEntries}" SelectedItem="{Binding Path=Priority,Mode=TwoWay}"/> The comboBox is bound properly with PriorityEntries, and when i change the value of the comboBox the "set" of the bound property(Priority) is called setting it to what it needs to be. However, when i close the UserControl that this combobox resides, it calls the set property again with a value of null and then sets what the selectedItem was to null. Why is the comboBox being bound again when I close the usercontrol. I tried setting the mode to OneTime, but that won't reflect any changes...

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  • Why does this crash with access violation to 0xcccccc...?

    - by Mike
    I have a random piece of code, I use for reading from CSV files... and it's fine... until after about 2000 reads... then the getline line fails with an access violation to 0xcccccc... which I assume means that the input stream (file) has been cleared... Not that I know why :) int CCSVManager::ReadCSVLine ( fstream * fsInputFile, vector <string> * recordData ) { string s; getline ( *fsInputFile, s ); stringstream iss( s ); for ( unsigned int i = 0; i < getNumFields (); i++ ) { getline ( iss, s, ',' ); (*recordData)[i] = s; } return 0; } Any ideas why?

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  • iphone: how do I obtain a list of all files with a given extension on the app's document folder?

    - by Mike
    I have saved all my files using something like this NSString *fileName = [NSString stringWithFormat:@"%@.plist", myName]; NSArray *paths = NSSearchPathForDirectoriesInDomains(NSDocumentDirectory, NSUserDomainMask, YES); NSString *documentsDirectory = [paths objectAtIndex:0]; NSString *appFile = [documentsDirectory stringByAppendingPathComponent:fileName]; [myDict writeToFile:appFile atomically:YES]) //where myDic is a dictionary containing the value of all parameters I would like to save. All these files were saved with the .plist extension. The same directory contains several JPG and PNG files. Now, how do I retrieve the list of all .plist files on that directory? thanks for any help.

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  • What is C# equivalent of PHP's mysql_fetch_array function?

    - by Mike Biff
    I am learning C#/ASP.NET and I am wondering what the C# equivalent of the following PHP code is? I know the userid, and I want to fetch the rows from this table into the array of the variable "row", so I then can use it as "row['name']" and "row['email']. $result = mysql_query("SELECT email, name FROM mytable WHERE id=7"); while ($row = mysql_fetch_array($result, MYSQL_ASSOC)) { printf("Email: %s Name: %s", $row["email"], $row["name"]); } Thanks.

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  • Junit (3.8.1) testing that an exception is thrown (works in unit test, fails when added to a testSui

    - by Mike Cargal
    I'm trying to test that I'm throwing an exception when appropriate. In my test class I have a method similar to the following: public void testParseException() { try { ClientEntitySingleton.getInstance(); fail("should have thrown exception."); } catch (RuntimeException re) { assertEquals( "<exception message>", re.getMessage()); } } This works fine (green bar) whenever I run that single unitTest class. However, when I add that test to a testSuite, I get a red bar Unit test failure reported on the exception. One more thing... it works in the testSuite, if it's the first test in the suite. Actually, I'm doing two of these tests and just figured out that if I make them the first two tests in the suite, all is good, but I get this failure if a "regular" test precedes it. So I have a work-around, but no real answer. Any ideas? Heres'a stack trace of the "failure" java.lang.RuntimeException: ProcEntity client dn="Xxxxxx/Xxxx/XXX" is defined multiple times. at com.someco.someprod.clientEntityManagement.ClientEntitySingleton.addClientEntity(ClientEntitySingleton.java:247) at com.someco.someprod.clientEntityManagement.ClientEntitySingleton.startElement(ClientEntitySingleton.java:264) at org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatcher.dispatch(Unknown Source) at org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source) at org.apache.xerces.parsers.XMLParser.parse(Unknown Source) at org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source) at com.someco.someprod.clientEntityManagement.ClientEntitySingleton.parse(ClientEntitySingleton.java:216) at com.someco.someprod.clientEntityManagement.ClientEntitySingleton.reload(ClientEntitySingleton.java:303) at com.someco.someprod.clientEntityManagement.ClientEntitySingleton.setInputSourceProvider(ClientEntitySingleton.java:88) at com.someco.someprod.clientEntityManagement.test.TestClientBase.setUp(TestClientBase.java:17) at com.someco.someprod.clientEntityManagement.test.TestClientEntityDup.setUp(TestClientEntityDup.java:8) at junit.framework.TestCase.runBare(TestCase.java:125) at junit.framework.TestResult$1.protect(TestResult.java:106) at junit.framework.TestResult.runProtected(TestResult.java:124) at junit.framework.TestResult.run(TestResult.java:109) at junit.framework.TestCase.run(TestCase.java:118) at junit.framework.TestSuite.runTest(TestSuite.java:208) at junit.framework.TestSuite.run(TestSuite.java:203) at junit.framework.TestSuite.runTest(TestSuite.java:208) at junit.framework.TestSuite.run(TestSuite.java:203) at org.eclipse.jdt.internal.junit.runner.junit3.JUnit3TestReference.run(JUnit3TestReference.java:128) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:460) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:673) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:386) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:196)

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  • R + Bioconductor : combining probesets in an ExpressionSet

    - by Mike Dewar
    Hi, First off, this may be the wrong Forum for this question, as it's pretty darn R+Bioconductor specific. Here's what I have: library('GEOquery') GDS = getGEO('GDS785') cd4T = GDS2eSet(GDS) cd4T <- cd4T[!fData(cd4T)$symbol == "",] Now cd4T is an ExpressionSet object which wraps a big matrix with 19794 rows (probesets) and 15 columns (samples). The final line gets rid of all probesets that do not have corresponding gene symbols. Now the trouble is that most genes in this set are assigned to more than one probeset. You can see this by doing gene_symbols = factor(fData(cd4T)$Gene.symbol) length(gene_symbols)-length(levels(gene_symbols)) [1] 6897 So only 6897 of my 19794 probesets have unique probeset - gene mappings. I'd like to somehow combine the expression levels of each probeset associated with each gene. I don't care much about the actual probe id for each probe. I'd like very much to end up with an ExpressionSet containing the merged information as all of my downstream analysis is designed to work with this class. I think I can write some code that will do this by hand, and make a new expression set from scratch. However, I'm assuming this can't be a new problem and that code exists to do it, using a statistically sound method to combine the gene expression levels. I'm guessing there's a proper name for this also but my googles aren't showing up much of use. Can anyone help?

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  • Setting Parameters from another Parameter In SSRS

    - by Mike
    I was able to get this working is SSRS 2008, but do to the fact that my company only has 2005 servers I need to downgrade the report to 2005. The idea is for a given person name there are two key fields EntityType and EntityId So I have a parameter from a dataset where the Label is the Name and the value is EntityType_EntityId I use the split function to take the left and right sides of from _ In 2008, I set the query parameters of the dataset to the split function and it works In 2005, I set the Default Value of each Report Parameters Now when I run the report and put textboxes showing the value of the parameters, the values are shown correctly but the query does not run. I am guessing that this is a lifecycle issue being Get Name Parameter Run Report THEN Set Parameters = Split of Name But the problem with that is the second time I run the report I should get result and I do not. Does anyone know what I am doing wrong. I guess I can pass in the underscore delimted string to the stored procedure and parse it there, but my question is can this be done in the report? Reason being other callers will pass in the parameters as two seperate values.

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  • what is the global.asax Application_Start equivalent when using WAS in IIS7

    - by Mike Tours
    Hi I'd like to use the netTcpBinding for my WCF application which is currently hosted in IIS7, which means configuring it to use WAS instead. This is fairly straight forward however, my application previously made use of the Application_Start event in the global.asax file. I do not require access to the httpContext(which I understand access has been removed in IIS7), however I would still like to hook into the start or init methods? Does an equivalent exist when hosting an application in WAS as apposed to IIS7? Using classic mode is not an option(again I'm not interested in the httpcontext and this only appears to work if using an http binding) - and I've seen an example of putting a static class instide the app_code folder which looks like a horrible hack.

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  • IIS7 and 301 permanment redirects using the location tag in web.config (ASP.NET MVC application)

    - by Mike
    I need to setup some 301 permanent redirects in the web.config of an ASP.NET MVC application running under IIS. The easiest way is to add a tag similar to the one below to the web.config file: <location path="TheMenu.aspx"> <system.webServer> <httpRedirect enabled="true" destination="menus/" httpResponseStatus="Permanent" /> </system.webServer> </location> When I go to the site at http://domain.com/TheMenu.aspx it redirects me to http://domain.com/menusxd instead of http://domain.com/menus What would be causing this? Thanks!

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  • What's it like being a financial programmer?

    - by Mike
    As a student who's done an internship at a Silicon Valley company(non-financial), I'm curious to know what it's like working for a financial company doing software development. I'd expect the hours to be longer, and the pay to be higher. Specifically, I have the following questions: What's the work/life balance really like? Are you expected to work 80 hours a week most weeks? For those who have worked in non-financial software engineering jobs, how does being a financial software engineer compare in terms of work/life balance? How much does it pay? I'm curious as to starting(i.e. just got a BS) pay, as well as "top out" pay. (I'd prefer concrete numbers - ballpark is fine). Also, bonuses would be useful information. What jobs do financial programmers typically have? Are most just general software engineers, or do people typically have very specialized(i.e. AI or systems) backgrounds? Also, do most programmers have PhDs? Are programmers typically required to be at work, or are financial companies generally flexible about letting programmers work from home? When at work, do programmers have to dress formally? What are the technology environments like? Are finance companies using state-of-the-art hardware and software, or are they generally more conservative in upgrading their equipment? What programming languages are typically used? If VBA(shudder) is used, is it a large part of a finance company's workflow? If you could turn back the clock, would you still be a financial programmer? I'm going to keep this post open a little bit longer to get some more responses.

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  • Cocoa - array not sorting?

    - by Mike
    I have this set NSMutableSet *mySet = [NSMutableSet setWithObjects: @"2", @"8", @"7", @"0", @"3", nil]; I copy the set to an array and sort it using NSArray *sortedArray = [[mySet allObjects] sortedArrayUsingSelector:@selector(compare:)]; The resulting array is in exactly the same order as the set and is not being sorted. Why? thanks for any help. EDIT: CORRECING A TYPO.

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  • Core Data ANY BETWEEN predicate

    - by Mike Weller
    I'm trying to create an NSPredicate to find 'projects' that contain 'sessions' within a certain date range. I tried this at first: [NSPredicate predicateWithFormat:@"ANY sessions.date BETWEEN {$STARTDATE, $ENDDATE}"]; But I get an exception: *** Terminating app due to uncaught exception 'NSInvalidArgumentException', reason: 'to-many key not allowed here' It seems BETWEEN does not work with ANY in this way. I'm also limited in use of () and AND clauses meaning I can't use something like: [NSPredicate predicateWithFormat:@"ANY (sessions.date > $STARTDATE && sessions.date < $ENDDATE)"]; If I try that I get a parse error. How can I do this? Thanks UPDATE: Note that this: [NSPredicate predicateWithFormat:@"ANY sessions.date > $STARTDATE && ANY sessions.date < $ENDDATE"]; Is incorrect because it returns a project where there is a session greater than the start date and another session less than the end date but no session in between.

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  • How to retrieve an array from Multidimensional Array.

    - by Mike Smith
    So I have a multi-dimensional array looks like this. $config = array( "First Name" => array( "user" => $_POST['firstname'], "limit" => 35, ), "Last Name" => array( "user" => $_POST['lastname'], "limit" => 40, ), ); I want use the array that's within the config array, so my approach is to use a foreach loop. foreach($config as $field => $data) { } Now I know that $data will be my array, but it seems I can't use it outside of the foreach statement because I only get half of whats already there. Using print_r you can see what it shows outside the loop: Array ( [user] => lastname [limit] => 40 ) But when inside the loop and I use print_r here is my result: Array ( [user] => firstname [limit] => 35 ) Array ( [user] => lastname [limit] => 40 ) I imagine it has to do something with it being with the foreach loop. I've tried to run a foreach on the $data array to populate another array, but that didn't work as well. Is there a way to use this outside of a foreach loop? Sorry if this a dumb question, I'm sure there is a quite a simple answer to this, but I'm just stumped, and can't think of a way to do this. Thanks.

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