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  • Perf4J Graph Output from Log File

    - by manyxcxi
    I currently have a long running process that I am trying to analyze with Perf4J. I currently have it writing results in CSV format to its own log file using the AsyncCoalescingStatisticsAppender and a StatisticsCsvLayout on the file appender. My question is; when I try and use the --graph option from the command line (using the perf4j jar) it isn't populating the data points- it isn't populating anything. Are my appenders set incorrectly? The log file contains hundreds (sometimes thousands) of data points of about 10 different tag names. <appender name="perfAppender" class="org.apache.log4j.FileAppender"> <param name="File" value="perfStats.log"/> <layout class="org.perf4j.log4j.StatisticsCsvLayout"> </layout> </appender> <appender name="CoalescingStatistics" class="org.perf4j.log4j.AsyncCoalescingStatisticsAppender"> <!-- The TimeSlice option is used to determine the time window for which all received StopWatch logs are aggregated to create a single GroupedTimingStatistics log. Here we set it to 10 seconds, overriding the default of 30000 ms --> <param name="TimeSlice" value="10000"/> <appender-ref ref="ConsoleAppender"/> <appender-ref ref="CompositeRollingFileAppender"/> <appender-ref ref="perfAppender"/> </appender>

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  • No output from Linq to XML

    - by Gogster
    Hi all, I have the following code: protected void Page_Load(object sender, EventArgs e) { XElement xml = XElement.Load(Server.MapPath("ArenasMembers.xml")); var query = from p in xml.Descendants("members") select new { Name = p.Element("name").Value, Email = p.Attribute("email").Value }; foreach (var member in query) { Response.Write("Employee: " + member.Name + " " + member.Email + "<br />"); } } Which, using the hover information in Visual Studio, is reading the XNL file in correctly, however the foreach is not outputting any of the records. XML: <?xml version="1.0" encoding="utf-8" ?> <members> <member> <arena>EAA Office</arena> <memberid>1</memberid> <name>Jane Doe</name> <email>[email protected]</email> </member> <member> <arena>EAA Office</arena> <memberid>2</memberid> <name>John Bull</name> <email>[email protected]</email> </member> <member> <arena>O2 Arena</arena> <memberid>3</memberid> <name>John Doe</name> <email>[email protected]</email> </member> <member> <arena>O2 Arena</arena> <memberid>4</memberid> <name>Bernard Cribbins</name> <email>[email protected]</email> </member> <member> <arena>Colourline Arena</arena> <memberid>5</memberid> <name>John Bon Jovi</name> <email>[email protected]</email> </member> <member> <arena>NIA</arena> <memberid>6</memberid> <name>Rhianna</name> <email>[email protected]</email> </member> </members> Can you see what is wrong?

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  • Maven copy project output into other project resources

    - by Thomas
    There are two projects: 1) applet project that outputs jar file 2) web app project that should host the jar file. After (1) finished building, the applet jar file should be copied into the webapp folder of (2). The purpose is that (2) will host the applet (1) on the Internet. A lot of examples explain how to use another project as a library dependency. Other examples, show how to use ant plugin to copy files. I am unsure on how to properly set this up, so that 'mvn install' on the parent project will do the copying at the right time.

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  • Formatted HTML as output from method invocation from JMX HTTP page

    - by Dutch
    Hi, Is there a way to return HTML from a method which gets called from the JMX HTTP page. I have a huge set of data and want to display the data with some formatting. The following code does not work: @ManagedOperation(description = "return html") @ManagedOperationParameters({@ManagedOperationParameter(name = "someVal", description = "text")}) public List returnAsHtml(String someVal) { return ""+someValblah"; } Looks like JMX escapes the returned script before throwing it to the browser.

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  • How to use SQL to output latest info with multiple col

    - by TGU
    Hi, I have a "weather" table below with 3 cols: City Temperature Date New York 22 C 10/10/2005 Seattle 21 C 10/10/2005 New York 18 C 10/09/2005 Seattle 20 C 10/09/2005 Washington 17 C 10/09/2005 New York 21 C 10/08/2005 Washington 20 C 10/08/2005 I want to find out the latest info on the City and Temperature in 3 cols as well (see example): City Temperature Date New York 22 C 10/10/2005 Seattle 21 C 10/10/2005 Washington 17 C 10/09/2005 Can anyone help? Thanks Rgds

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  • Need help with fonts in latex: output too dim

    - by laspal
    I have a problem where all fonts come out too dim. Is there any thing I can do to get a different look and feel from the pdfs? My tex file looks like \documentclass[a4paper,twoside]{article}` \usepackage{graphics} \usepackage{color} \usepackage{hyperref} \usepackage{multirow} \usepackage{longtable} \usepackage{fullpage} \usepackage[pdftex]{graphicx} \usepackage{fancyhdr} \oddsidemargin 0cm \evensidemargin 0cm \pagestyle{fancy} \renewcommand{\headrulewidth}{0.0pt} \rfoot{Raval, Ketan R -13223} \textwidth 15.5cm \topmargin -1cm \parindent 0cm \textheight 26.5cm \parskip 1mm \begin{document} \fontencoding{\encodingdefault} \renewcommand{\familydefault}{\sfdefault} \fontshape{\shapedefault} \selectfont So how can I improve my overall look and feel of the pdf? Thanks

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  • Convert Console Output to Array

    - by theundertaker
    Using netsh wlan show networks mode=bssid on Windows CMD yields a listing of available wireless networks. Is it possible to convert the list, which looks something like this: Interface name : Wireless Network Connection There are 11 networks currently visible. SSID 1 : Custom Gifts Memphis Network type : Infrastructure Authentication : Open Encryption : WEP BSSID 1 : 00:24:93:0c:49:e0 Signal : 16% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 6 9 12 18 24 36 48 54 SSID 2 : airportthru Network type : Adhoc Authentication : Open Encryption : None BSSID 1 : 62:4c:fe:9c:08:18 Signal : 53% Radio type : 802.11g Channel : 10 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 3 : belkin.ffe Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : 08:86:3b:9c:8f:fe Signal : 23% Radio type : 802.11n Channel : 1 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 4 : 3333 Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : 00:0f:cc:6d:ba:ac Signal : 18% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 22 24 36 48 54 BSSID 2 : 06:02:6f:c3:06:27 Signal : 20% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 5 : linksys Network type : Infrastructure Authentication : Open Encryption : None BSSID 1 : 98:fc:11:69:35:46 Signal : 38% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 6 : iHub_0060350392e0 Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : 00:c0:02:7d:5f:4e Signal : 18% Radio type : 802.11g Channel : 11 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 7 : TopFlight Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : 00:14:6c:7a:c4:70 Signal : 16% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 8 : 2WIRE430 Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : b8:e6:25:cb:56:a1 Signal : 16% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 9 : LUBIN Network type : Infrastructure Authentication : WPA-Personal Encryption : TKIP BSSID 1 : 00:13:10:8d:a7:32 Signal : 65% Radio type : 802.11g Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 10 : TV2 Network Network type : Infrastructure Authentication : WPA2-Personal Encryption : CCMP BSSID 1 : b8:c7:5d:07:6e:cf Signal : 79% Radio type : 802.11n Channel : 11 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 SSID 11 : guywork Network type : Infrastructure Authentication : Open Encryption : WEP BSSID 1 : 00:18:e7:cf:02:20 Signal : 15% Radio type : 802.11n Channel : 6 Basic rates (Mbps) : 1 2 5.5 11 Other rates (Mbps) : 6 9 12 18 24 36 48 54 ... into an array using JavaScript or C#? I know it is but it seems like it may be rather difficult. Are there other avenues of obtaining such network information in the requested format? A JavaScript object would be perfect.

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  • Use the output of logs in the execution of a program

    - by myle
    When I try to create a specific object, the program crashes. However, I use a module (mechanize) which logs useful information just before the crash. If I had somehow this information available I could avoid it. Is there any way to use the information which is logged (when I use the function set_debug_redirects) during the normal execution of the program? Just to be a bit more specific, I try to emulate the login behavior in a webpage. The program crashes because it can't handle a specific Following HTTP-EQUIV=REFRESH to <omitted_url>. Given this url, which is available in the logs but not as part of the exception which is thrown, I could visit this page and complete successfully the login process. Any other suggestions that may solve the problem are welcomed. It follows the code so far. SERVICE_LOGIN_BOX_URL = "https://www.google.com/accounts/ServiceLoginBox?service=adsense&ltmpl=login&ifr=true&rm=hide&fpui=3&nui=15&alwf=true&passive=true&continue=https%3A%2F%2Fwww.google.com%2Fadsense%2Flogin-box-gaiaauth&followup=https%3A%2F%2Fwww.google.com%2Fadsense%2Flogin-box-gaiaauth&hl=en_US" def init_browser(): # Browser br = mechanize.Browser() # Cookie Jar cj = cookielib.LWPCookieJar() br.set_cookiejar(cj) # Browser options br.set_handle_equiv(True) br.set_handle_gzip(False) br.set_handle_redirect(True) br.set_handle_referer(True) br.set_handle_robots(True) br.set_handle_refresh(mechanize._http.HTTPRefreshProcessor(), max_time=30.0, honor_time=False) # Want debugging messages? #br.set_debug_http(True) br.set_debug_redirects(True) #br.set_debug_responses(True) return br def adsense_login(login, password): br = init_browser() r = br.open(SERVICE_LOGIN_BOX_URL) html = r.read() # Select the first (index zero) form br.select_form(nr=0) br.form['Email'] = login br.form['Passwd'] = password br.submit() req = br.click_link(text='click here to continue') try: # this is where it crashes br.open(req) except HTTPError, e: sys.exit("post failed: %d: %s" % (e.code, e.msg)) return br

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  • Quote POSIX shell special characters in Python output

    - by ??O?????
    There are times that I automagically create small shell scripts from Python, and I want to make sure that the filename arguments do not contain non-escaped special characters. I've rolled my own solution, that I will provide as an answer, but I am almost certain I've seen such a function lost somewhere in the standard library. By “lost” I mean I didn't find it in an obvious module like shlex, cmd or subprocess. Do you know of such a function in the stdlib?

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  • Odd GROUP BY output DB2 - Results not as expected

    - by CallCthulhu
    If I run the following query: select load_cyc_num , crnt_dnlq_age_cde , sum(cc_min_pymt_amt) as min_pymt , sum(ec_tot_bal) as budget , case when ec_tot_bal 0 then 'Y' else 'N' end as budget , case when ac_stat_cde in ('A0P','A1P','ARP','A3P') then 'Y' else 'N' end as arngmnt , sum(sn_close_bal) as st_bal from statements where (sn_close_bal 0 or ec_tot_bal 0) and load_cyc_num in (200911) group by load_cyc_num , crnt_dnlq_age_cde , case when ec_tot_bal 0 then 'Y' else 'N' end , case when ac_stat_cde in ('A0P','A1P','ARP','A3P') then 'Y' else 'N' end then I get the correct "BUDGET" grouping, but not the correct "ARRANGEMENT" grouping, only two rows have a "Y". If I change the order of the case statements in the GROUP BY, then I get the correct grouping (full Y-N breakdown for both columns). Am I missing something obvious?

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  • Problems with maven output directory

    - by Gandalf StormCrow
    I'm using almost same POM for both my projects, they are on the same workspace but they are not related at all, they are related however because in both I use spring and jboss. Here is the pom : <project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"> <modelVersion>4.0.0</modelVersion> <groupId>com.springinaction.hello</groupId> <artifactId>spring-in-action</artifactId> <packaging>jar</packaging> <version>0.0.1-SNAPSHOT</version> <name>spring-in-action</name> <url>http://maven.apache.org</url> <properties> <jboss.ome>C:\jboss-5.1.0.GA\server\default\deploy</jboss.ome> <springversion>2.5.3</springversion> </properties> <dependencies> <dependency> <groupId>org.springframework</groupId> <artifactId>spring</artifactId> <version>${springversion}</version> </dependency> <dependency> <groupId>log4j</groupId> <artifactId>log4j</artifactId> <version>1.2.14</version> <scope>provided</scope> </dependency> </dependencies> <build> <plugins> <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-war-plugin</artifactId> <version>2.0</version> <configuration> <warName>spring-book</warName> <outputDirectory>${jboss.ome}</outputDirectory> </configuration> </plugin> </plugins> </build> </project> What I want to achieve with this POM is that I want to name my war when built spring-book.war and copy it to Jboss location I specified. Now in my first project this works it does exactly what I requested but in other it does not. I changed springversion and jboss home properties variable but everything remains the same, what can I do ? The project builds and all, everything is working perfectly just I don't want to copy everytime in my jboss dir and previously remove the old war, it takes about 20sec on each source code change its a lot

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  • SQL2k8 T-SQL: Output into XML file

    - by Nai
    I have two tables Table Name: Graph UID1 UID2 ----------- 12 23 12 32 41 51 32 41 Table Name: Profiles NodeID UID Name ----------------- 1 12 Robs 2 23 Jones 3 32 Lim 4 41 Teo 5 51 Zacks I want to get an xml file like this: <graph directed="0"> <node id="1"> <att name="UID" value="12"/> <att name="Name" value="Robs"/> </node> <node id="2"> <att name="UID" value="23"/> <att name="Name" value="Jones"/> </node> <node id="3"> <att name="UID" value="32"/> <att name="Name" value="Lim"/> </node> <node id="4"> <att name="UID" value="41"/> <att name="Name" value="Teo"/> </node> <node id="5"> <att name="UID" value="51"/> <att name="Name" value="Zacks"/> </node> <edge source="12" target="23" /> <edge source="12" target="32" /> <edge source="41" target="51" /> <edge source="32" target="41" /> </graph> Thanks very much!

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  • Windows cmd.exe output in PowerShell

    - by noledgeispower
    I have a script for remotely executing commands on other machines, however... when using windows cmd.exe commands It does not write to the file on the remote server. Here is the code. $server = 'serverName' $Username = 'userName' $Password = 'passWord' $cmd = "cmd /c ipconfig" ######################## ######################## $ph = "C:\mPcO.txt" $rph = "\\$server\C$\mPcO.txt" $cmde = "$cmd > $ph" $pass = ConvertTo-SecureString -AsPlainText $Password -Force $mycred = new-object -typename System.Management.Automation.PSCredential -argumentlist "$Username",$pass Invoke-WmiMethod win32_process -name create -ComputerName $server -ArgumentList $cmde Credential $mycred cmd /c net use \\$server\C$ $password /USER:$username Get-Content $rph Remove-Item $rph cmd /c net use \\$server\C$ /delete As you can see we simply write $cmde = "$cmd > $ph" if I use a PowerShell command I use $cmde = "$cmd | Out-File $ph" and it works fine. Any advice Appreciated

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  • Output to jTextArea in realtime

    - by Robert
    I have some code which takes a few minutes to process, it has to connect to the web for each string in a long array, each string is a url. I want to make it so that everytime it connects, it should refresh the jtextarea so that the user is not staring into a blank page that looks frozen for 20 min. or however long it takes. here is an example of something i tried and didnt work: try { ArrayList<String> myLinks = LinkParser.getmyLinksArray(jTextArea1.getText()); for (String s : myLinks) { jTextArea2.append(LinkChecker.checkFileStatus(s) + "\n"); } } catch (IOException ex) { JOptionPane.showMessageDialog(jTextArea1, "Parsing Error", "Parsing Error", JOptionPane.ERROR_MESSAGE); Logger.getLogger(MYView.class.getName()).log(Level.SEVERE, null, ex); }

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  • Control pdb file output from build defintion file

    - by Urvi
    Hello, I am trying to generate a release build with no pdb files generated. I have seen numerous posts that suggest right-clicking on the project, selecting Properties, going to the Build tab and then to the Advanced... butoon and changing Debug Info to none. This works and all, but I need to do this for a build of ~50 solutions which contain ~25 projects each! Other posts mention editing the appropriate .csproj file, but again, with so many projects, this would take a long time. Is there any way to achieve this via the TFSBuild.proj file? I have tried adding the following to the TFSBuild.proj file, with no luck. <PropertyGroup> <Configuration>Release</Configuration> <Platform>AnyCPU</Platform> </PropertyGroup> <PropertyGroup> <DebugSymbols>false</DebugSymbols> <DebugType>none</DebugType> <Optimize>true</Optimize> </PropertyGroup> The following line prints out Release|AnyCPU, none, and false, but I still see .pdb file in the $(OutputDir) folder. <Message Text="$Configuration|Platform): $(Configuration)|$(Platform)" /> <Message Text="DebugType is: $(DebugType)"/> <Message Text="DebugSymbols is: $(DebugSymbols)"/> Thanks in advance, Urvi

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  • How to compare the output of serializeArray using qunit

    - by dorelal
    I am using qunit and jquery. Latest version of both. In my code when I submit the form I have the event as e. I call e.serializeArray() Here is my test. equals(args.data, [ { "name": "user_name", "value": "john" } ], 'input data'); And this is the error message from qunit. expected: [ { "name": "user_name", "value": "david" } ] result: [ { "name": "user_name", "value": "david" } ] As you can see to the naked eye the expected and result value is same but qunit is not liking it. I guess I am missing something.

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  • using gsub to modify output of xtable command

    - by stevejb
    Hello, my.mat <- cbind(1:5, rnorm(5), 6:10, rnorm(5)) colnames(my.mat) <- c("Turn", "Draw","Turn", "Draw") print(xtable(my.mat)) yields \begin{table}[ht] \begin{center} \begin{tabular}{rrrrr} \hline & Turn & Draw & Turn & Draw \\ \hline 1 & 1.00 & -0.72 & 6.00 & 0.91 \\ 2 & 2.00 & 0.57 & 7.00 & 0.56 \\ 3 & 3.00 & 1.08 & 8.00 & 0.55 \\ 4 & 4.00 & 0.95 & 9.00 & 0.46 \\ 5 & 5.00 & 1.94 & 10.00 & 1.06 \\ \hline \end{tabular} \end{center} \end{table} I want to filter out the \begin{table} and \end{table} lines. I can do this using gsub, but how to I get the results of print(xtable(... into a variable? Thanks for the help Stack Overflow R community!

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  • Cruise Control.net Ms Build Task setting XML output Name

    - by Eric Brown - Cal
    We are running version 1.5.6755.1 of CruiseControl.net. Here is our block that executes a build <!-- MSBuild of Source Code --> <cb:define name="BuildOneProject-block"> <msbuild> <executable>C:\WINDOWS\Microsoft.NET\Framework\v3.5\MSBuild.exe</executable> <!-- Directory where source is --> <workingDirectory>D:\CC\$(AppName)\Source</workingDirectory> <!-- Solution file to be built--> <projectFile>D:\CC\$(AppName)\Source\$(ProjectName)\$(ProjectName).csproj</projectFile> <buildArgs>/noconsolelogger /p:SolutionName=\$(AppName) /p:SolutionDir=D:\CC\$(AppName)\Source /p:Configuration=$(ReleaseOrDebug) /v:diag</buildArgs> <targets>Build</targets> <timeout>900</timeout> <logger>C:\Program Files\CruiseControl.NET\server\ThoughtWorks.CruiseControl.MsBuild.dll</logger> </msbuild> </cb:define> When this run it generates a file with a name like.. msbuild-results-5cb1c8fa-1bba-4e97-a0b1-b2bf637308dc.xml Is there another tag on the MsBuild task that allows me to name the xml file? Is there an argument to the Logger that allows me to specify the name of the xml file?

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  • OpenGL Vertex Buffer Object code giving bad output.

    - by Matthew Mitchell
    Hello. My Vertex Buffer Object code is supposed to render textures nicely but instead the textures are being rendered oddly with some triangle shapes. What happens - http://godofgod.co.uk/my_files/wrong.png What is supposed to happen - http://godofgod.co.uk/my_files/right.png This function creates the VBO and sets the vertex and texture coordinate data: extern "C" GLuint create_box_vbo(GLdouble size[2]){ GLuint vbo; glGenBuffers(1,&vbo); glBindBuffer(GL_ARRAY_BUFFER, vbo); GLsizeiptr data_size = 8*sizeof(GLdouble); GLdouble vertices[] = {0,0, 0,size[1], size[0],0, size[0],size[1]}; glBufferData(GL_ARRAY_BUFFER, data_size, vertices, GL_STATIC_DRAW); data_size = 8*sizeof(GLint); GLint textcoords[] = {0,0, 0,1, 1,0, 1,1}; glBufferData(GL_ARRAY_BUFFER, data_size, textcoords, GL_STATIC_DRAW); return vbo; } Here is some relavant code from another function which is supposed to draw the textures with the VBO. glTexParameteri(GL_TEXTURE_2D,GL_TEXTURE_WRAP_S,GL_CLAMP_TO_EDGE); glTexParameteri(GL_TEXTURE_2D,GL_TEXTURE_WRAP_T,GL_CLAMP_TO_EDGE); glMatrixMode(GL_MODELVIEW); glLoadIdentity(); glColor4d(1,1,1,a/255); glBindTexture(GL_TEXTURE_2D, texture); glTranslated(offset[0],offset[1],0); glBindBuffer(GL_ARRAY_BUFFER, vbo); glVertexPointer(2, GL_DOUBLE, 0, 0); glEnableClientState(GL_VERTEX_ARRAY); glTexCoordPointer (2, GL_INT, 0, 0); glEnableClientState(GL_TEXTURE_COORD_ARRAY); glDrawArrays(GL_TRIANGLES, 0, 3); glDrawArrays(GL_TRIANGLES, 1, 3); glDisableClientState(GL_TEXTURE_COORD_ARRAY); glDisableClientState(GL_VERTEX_ARRAY); glBindBuffer(GL_ARRAY_BUFFER, 0); I would have hoped for the code to use the first three coordinates (top-left,bottom-left,top-right) and the last three (bottom-left,top-right,bottom-right) to draw the triangles with the texture data correctly in the most efficient way. I don't see why triangles should make it more efficient but apparently that's the way to go. It, of-course, fails for some reason. I am asking what is broken but also am I going about it in the right way generally? Thank you.

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  • Send Logcat output of an App to an EmailAdress

    - by Sebi
    Hi Were now testing our application with a few friends. Sometimes there are some errors which dont throw an exception. So I don't really know whats the problem was. So i thought it would be a good idea to implement a menu item which allows to send the logcat file to a email adress, so that we can examine the logcat. Unfortunately I didnt found a hint in the Internet how to extract the Logcat from a phone. How to send a email shouldn't be the problem.

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  • Subprocess fails to catch the standard output

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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