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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Yank file name / path of current buffer in Vim

    - by Dave Tapley
    Assuming the current buffer is a file open for edit, so :e does not display E32: No file name. I would like to yank one or all of: The file name exactly as show on the status line, e.g. ~\myfile.txt A full path to the file, e.g. c:\foo\bar\myfile.txt Just the file name, e.g. myfile.txt

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  • How to launch java application from Dock, Mac

    - by Sunil Kumar Sahoo
    I have created a Java Swing application. It works fine. I have created application file (.app) for that application using jar bundler. But the main problem is that my application does not open if I click it on the Dock. I am using Mac OS. How I can launch my application by clicking on Dock Thanks Sunil Kumar Sahoo

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  • Exception when creating an activity: Could not select item Parcel unable to marshal value

    - by user341652
    Hi, I am trying to call an Activity from another instance of the activity. The code is supposed to be a simple file browser (part of a larger application). I am using a ListActivity, and when an item (such as a folder) is selected, it is supposed to open it up in the new Activity. I have a feeling it is a problem with the AndroidManifest (which just has the basic tag). Any assistance would be appreciated. Thanks, Steve

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  • Accessing a namespace containing .base in its name from F#

    - by emaster70
    As the title says, I'm trying to use a class declared in a namespace which contains "base" in its name. Think of a situation like the following: open Foo.base.Bar In C# I'd just use @ before base but F# seems to ignore that and to think that @ is the infix operator used for list concatenation. Since the namespace belongs to a third-party library which I cannot modify, is there a way I can still access it from F#?

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  • How to handle a Security Alert Pop Up on IE by VBScript

    - by eightants
    I need to create a VBScript (WSH) to automatically open Internet Explorer and navigate a security web page. However, it always pops up a security alert before displaying that website. Can anyone provide a solution for either disables the pop up function (security certification) in IE or accepts the pop-up by the script? Here is my script: Dim objIE Set objIE = CreateObject("InternetExplorer.Application") objIE.Visible = True objIE.Navigate "https://10.10.10.101:9000/Portal" ???? Set objIE = Nothing Thanks a lot.

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  • Using a macro for fstream file input as part of a class

    - by vette982
    I have a class that processes a file, and as part of the constructor with one argument I want to input a file using fstream. I basically want it do something like this class someClass{ public: someClass(char * FILENAME) { fstream fileToProcess; fileToProcess.open(<FILENAME>, fstream::in | fstream::out | fstream::app); } }; I want to pass the filename in as an argument to the class constructor, and then the class someClass will access it with fstream.

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  • Is there an easy way to change iPhone Application Settings from within an application?

    - by Matt
    I've got application settings working just fine. However, I'd like to be able to change my app settings from within my app. It seems as though there should be some kind of generic way to add this functionality to my app without having to recreate all the controls myself. I mean, the code is already written in apple's settings app. Maybe someone wrote this code and open sourced it? (if it is not already available)

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  • How to set image on EAGL VIEW

    - by Viral
    hi, I want to put images from my photo library in to the EAGL view for some further processing. The image that are already in our resources folder will be taken by itself but mltiple or images from photo library can't. So any one knows how to put image on EAGL view in open GLES. Regtards viral

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  • AJAX, same-origin Policy and working XML Requests

    - by Joern
    Hello guys, so, currently I develop Widgets for Smartphones and am going a bit more advanced into fields of data exchange between client and server applications. My problem is: For my current project I want my client file to request data from a PHP script with the help of AJAX XmlHttpRequest and the POST method: function xmlRequestNotes() { var parameter = 'p=1234'; xmlhttp = new XMLHttpRequest(); xmlhttp.open("POST", url, true); // Http Header xmlhttp.setRequestHeader("Content-Type", "application/x-www-form-urlencoded"); xmlhttp.setRequestHeader("Content-length", parameter.length); xmlhttp.setRequestHeader("Connection", "close"); xmlhttp.onreadystatechange=function() { if (xmlhttp.readyState==4 && xmlhttp.status==200) { json = JSON.parse(xmlhttp.responseText); // Doing Stuff with the Response } }; xmlhttp.send(parameter); } This works perfectly fine on my local server set up in XAMPP and the local Widget emulator. But if it gets onto the device (also with access to the target network) I receive the 101 Network Error. And as far as I have read, this is due to the "Same-Origin Policy" of XmlHttpRequests? My problem is to really understand that. Although the idea of this policy is clear to me, I'm a bit confused by the fact that another XmlHttpRequest for a Yahoo Weather XML Feed works fine. Now, could anyone be so helpful to enlighten me? Here is the request that returns a city name from Yahoo's weather feed: function getCityName() { xmlhttp = new XMLHttpRequest(); xmlhttp.open("GET", "http://weather.yahooapis.com/forecastrss?w=645458&u=c", true); xmlhttp.onreadystatechange = function() { if (xmlhttp.readyState==4 && xmlhttp.status==200) { xmlhttp.responseXML; var yweather = "http://xml.weather.yahoo.com/ns/rss/1.0"; alert(xmlhttp.responseXML.getElementsByTagNameNS(yweather, "location")[0].getAttribute("city")); } }; xmlhttp.send(null); } Obvious differences are the POST and GET methods for once, but seeing that the Same-Origin Policy takes effect no matter what method, I can't really make much sense of it. Why does the latter request work but not the first? I would really appreciate some help here. Greetings and a merry Christmas to you guys!

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  • How Can I Log and Find the Most Expensive Queries?

    - by Pure.Krome
    Hi folks The activity monitor in sql2k8 allows us to see the most expensive queries. Ok, that's kewl, but is there a way I can log this info or get this info via query analyser? I don't really want to have the Sql Management console open and me looking at the activity monitor dashboard. I want to figure out which queries are poorly written/schema is poorly designed, etc. Thanks heaps for any help!

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  • ways to store data in c#

    - by Audel
    I am looking for ways to store data in a windows form application in C#. I want to make the input data of a system persistent, so when I close my program and open it again, the data is retrieved. Which ways are of doing this besides creating a linked database? Examples are gladly appreciated regards

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  • Use html page in lightbox?

    - by qulzam
    I have 2 html files. I want to use one html form in light box. so that when i clink a button on form the other form open in lightbox. Plz share any informative link. I search google but not find correctly.

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  • Does this introduce security vulnerabilities?

    - by mcmt
    I don't think I'm missing anything. Then again I'm kind of a newbie. def GET(self, filename): name = urllib.unquote(filename) full = path.abspath(path.join(STATIC_PATH, filename)) #Make sure request is not tricksy and tries to get out of #the directory, e.g. filename = "../.ssh/id_rsa". GET OUTTA HERE assert full[:len(STATIC_PATH)] == STATIC_PATH, "bad path" return open(full).read()

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  • How to programmatically cut/copy/get files to/from Windows clipboard in a systam standard compliand

    - by Ivan
    How to put a cut/copy reference to specific files and/or folders into Windows clipboard so that when I open standard Windows Explorer window, go to somewhere and press Ctrl+V - the files are pasted? If I copy or cut some files/folders in Windows Explorer, how do I get this info (full names and whether they were cut or copied) in my Program? I program in C#4, but other languages ways are also interesting to know.

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  • Connection Limit in Adobe AIR?

    - by Brinias
    I have an Adobe AIR application that makes multiple connections to a server. When I open more than two connections I get an error: 2032: Stream Error. Is there a configuration option or a property somewhere to raise the limit?

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  • Writing csv header removes data from numpy array written below

    - by user338095
    I'm trying to export data to a csv file. It should contain a header (from datastack) and restacked arrays with my data (from datastack). One line in datastack has the same length as dataset. The code below works but it removes parts of the first line from datastack. Any ideas why that could be? s = ','.join(itertools.chain(dataset)) + '\n' newfile = 'export.csv' f = open(newfile,'w') f.write(s) numpy.savetxt(newfile, (numpy.transpose(datastack)), delimiter=', ') f.close()

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