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  • using R.zoo to plot multiple series with error bars

    - by dnagirl
    I have data that looks like this: > head(data) groupname ob_time dist.mean dist.sd dur.mean dur.sd ct.mean ct.sd 1 rowA 0.3 61.67500 39.76515 43.67500 26.35027 8.666667 11.29226 2 rowA 60.0 45.49167 38.30301 37.58333 27.98207 8.750000 12.46176 3 rowA 120.0 50.22500 35.89708 40.40000 24.93399 8.000000 10.23363 4 rowA 180.0 54.05000 41.43919 37.98333 28.03562 8.750000 11.97061 5 rowA 240.0 51.97500 41.75498 35.60000 25.68243 28.583333 46.14692 6 rowA 300.0 45.50833 43.10160 32.20833 27.37990 12.833333 14.21800 Each groupname is a data series. Since I want to plot each series separately, I've separated them like this: > A <- zoo(data[which(groupname=='rowA'),3:8],data[which(groupname=='rowA'),2]) > B <- zoo(data[which(groupname=='rowB'),3:8],data[which(groupname=='rowB'),2]) > C <- zoo(data[which(groupname=='rowC'),3:8],data[which(groupname=='rowC'),2]) ETA: Thanks to gd047: Now I'm using this: z <- dlply(data,.(groupname),function(x) zoo(x[,3:8],x[,2])) The resulting zoo objects look like this: > head(z$rowA) dist.mean dist.sd dur.mean dur.sd ct.mean ct.sd 0.3 61.67500 39.76515 43.67500 26.35027 8.666667 11.29226 60 45.49167 38.30301 37.58333 27.98207 8.750000 12.46176 120 50.22500 35.89708 40.40000 24.93399 8.000000 10.23363 180 54.05000 41.43919 37.98333 28.03562 8.750000 11.97061 240 51.97500 41.75498 35.60000 25.68243 28.583333 46.14692 300 45.50833 43.10160 32.20833 27.37990 12.833333 14.21800 So if I want to plot dist.mean against time and include error bars equal to +/- dist.sd for each series: how do I combine A,B,C dist.mean and dist.sd? how do I make a bar plot, or perhaps better, a line graph of the resulting object?

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  • Rebuilding old (2010) django project in 2012

    - by birgit
    I am trying to make an old Django project run again. After seemingly having solved issues with old sorl.thumbnail versions and deprecated expressions I now get this error when running python manage.py runserver I also tried to copy & paste my old files into a new Django project and get the exactly same error. Maybe someone here has a clue where the problem lies? Unhandled exception in thread started by <bound method Command.inner_run of <django.contrib.staticfiles.management.commands.runserver.Command object at 0x2a80510>> Traceback (most recent call last): File "/usr/lib/python2.7/dist-packages/django/core/management/commands/runserver.py", line 88, in inner_run self.validate(display_num_errors=True) File "/usr/lib/python2.7/dist-packages/django/core/management/base.py", line 249, in validate num_errors = get_validation_errors(s, app) File "/usr/lib/python2.7/dist-packages/django/core/management/validation.py", line 35, in get_validation_errors for (app_name, error) in get_app_errors().items(): File "/usr/lib/python2.7/dist-packages/django/db/models/loading.py", line 146, in get_app_errors self._populate() File "/usr/lib/python2.7/dist-packages/django/db/models/loading.py", line 61, in _populate self.load_app(app_name, True) File "/usr/lib/python2.7/dist-packages/django/db/models/loading.py", line 78, in load_app models = import_module('.models', app_name) File "/usr/lib/python2.7/dist-packages/django/utils/importlib.py", line 35, in import_module __import__(name) File "/home/me/Documents/wdws/wdws/../wdws/cityofwindows/models.py", line 73, in <module> class Image(models.Model): File "/home/me/Documents/wdws/wdws/../wdws/cityofwindows/models.py", line 83, in Image 'large': {'size': (640, 640)}, File "/usr/lib/python2.7/dist-packages/django/db/models/fields/files.py", line 233, in __init__ super(FileField, self).__init__(verbose_name, name, **kwargs) TypeError: __init__() got an unexpected keyword argument 'extra_thumbnails' I need to re-build the project just for visual documentation locally... so also any hints on how to quickly re-run outdated django-projects are very welcome!! Thanks a lot (using Ubuntu 12.04)

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  • suggest a 'headless' linux dist that i can use to play with firefox, Xvfb and selenium RC?

    - by significance
    i'd like to build a similar replica of the virtual server i hire from my hosting company in order to test a windowless application of firefox using Xvfb. i'd like to do so using a parallels virtual machine on OSX. i'm happy to run some commands to get info but i'm pretty much a linux noob so be gentle! at the moment this is all i really know: [GCC 4.1.2 20080704 (Red Hat 4.1.2-46)] on linux2 thanks :)

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  • How to assess the risk of a java version upgrade?

    - by Roy Tang
    I'm being asked to assess whether we can safely upgrade the java version on one of our production-deployed webapps. The codebase is fairly large and we want to avoid having to regression test everything (no automated tests sadly), but we've already encountered at least one problem during some manual testing (XmlStringReader.getLocalName now throws an IllegalStateExeption when it just used to return null) and higher-ups are pretty nervous about the upgrade. The current suggested approach is to do a source compare of the JDK sources for each version and assess those changes to see which ones might have impact, but it seems there's a lot of changes to go through (and as mentioned the codebase is kinda large). Is it safe and easier to just review the java version changes for each version? Or is there an easier way to conduct this assessment? Edit: I forgot to mention the version upgrade being considered is a minor version upgrade, i.e. 1.6.10 to 1.6.33

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  • SQLAuthority News – 2 Security Updates for SQL Server 2000 SP 4 Users

    - by pinaldave
    If you are using SQL Server 2000 still today my very first recommendation to you is to upgrade to SQL Server 2012. SQL Server 2000 is now 12 years old product and since then many new enhancements as well features which are relevant to current growth and progress in Informational Industry. Now is the time to catch up with the latest trends. Here is one more point for you to notice if this helps you consider to upgrade to the latest version. One can’t upgrade directly from SQL Server 2000 to SQL Server 2012. You need to first upgrade to either SQL Server 2005/2008/R2 and then further plan to upgrade to SQL Server 2012. There is no direct upgrade path for SQL Server 2000 to SQL Server 2012. I strongly believe this is the time to upgrade to the latest version. Well, also there is a rule that to let something continue if it is not broken and working fine. If you are following that rule and still using SQL Server 2000 I strongly suggest that you upgrade your SQL Server 2000 SP4 and update it with latest Security updates. Here are two important SQL Server Security Updates. Security Update for SQL Server 2000 Service Pack 4 (KB983811) Security Update for SQL Server 2000 Service Pack 4 (KB983812) As we are talking about SQL Server 2000 let me ask you a quick question – how many of you are still using SQL Server 2000 or earlier version in a production system on at least one server? Reference: Pinal Dave (http://blog.sqlauthority.com) Filed under: PostADay, SQL, SQL Authority, SQL Download, SQL Query, SQL Security, SQL Server, SQL Tips and Tricks, T SQL, Technology

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  • mysql 5.0.23 vs 5.5 performance benefits and upgrade issues ?

    - by WarDoGG
    I have been told that mysql 5.5 has a significant performanance boost compared to 5.0 Our server handles alot of data (around 30 million records processed per 5-10 seconds) and requires every drop of performance boost we can give. Will it be beneficial if we upgrade from 5.0.23 to mysql 5.5 ? Also, we have lots of database indexes setup on the tables and i've been told that sometimes the indexes become corrupt after a version upgrade and they have to be rebuilt. Is this true ?

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  • How to upgrade a 1.4.3 TortoiseSVN-created repository to 1.6.x?

    - by SiegeX
    A few years ago, TortoiseSVN 1.4.3 was deployed to our software development team and we are now looking at upgrading the client to the latest 1.6.x version. I had hoped this upgrade would be transparent with the additional features and modifications being client-side. For the most part, this was true except for a very important feature -- merging. When I try to merge a feature branch back into truck I get a show-stopping "Merge tracking not supported error." Here are some facts worth noting: When the repo was first created (before I was on board), it was created via the TortoiseSVN client itself. We do not have a 'svn server daemon' per se, rather the repository folders/database resides on a share folder that is accessible from our workstation machines via file:///. This was actually an eye opener for me, I had always thought there was some SVN server daemon we were talking to. We do not have any access to the underlying machine hosting the SVN share other than the ability to read/write to the share itself. I don't even know what OS the machine is running on. This share server was chosen because its drives are backed up nightly by our IT group. In all honesty, we really don't need the merge tracking feature although it would be nice to have. For the time being it would be sufficient to be able to use a 1.6.x TortoiseSVN client on the 1.4.3 repository and have it merge (sans tracking) without error. So now the question becomes, how does one upgrade a client-created 1.4.3 repo to a 1.6.x compatible version without access to the underlying machine the repo resides on? I was hoping the TortoiseSVN client itself had the ability to do this but that does not appear to be the case. Will I be forced to copy the entire repo over to my local drive, run some svn commands to upgrade the repo locally then copy the repo back to the share point? If so, will doing this break any compatibility with the the 1.4.3 clients in case we cant upgrade them all at the same time? Thanks for the help.

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  • Can I install a clean copy of windows 8 using an upgrade licence key?

    - by Mr. Alien
    Ok so question says it all, I want to buy Windows 8 but don't want to shell out 3.5k for buying a new disc, my friend is already having it. So what I want to know is can I buy an upgrade license which is around 1.99k, and install a clean Windows 8 OS(I want a complete clean install, no upgrading) on my system using my friends Windows 8 disc with my upgrade license or I need to buy a completely new retail copy?

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  • mysql 5.0.23 vs 5.5 performance benefits and upgrade issues?

    - by WarDoGG
    I have been told that mysql 5.5 has a significant performance boost compared to 5.0 Our server handles a lot of data (around 30 million records processed per 5-10 seconds) and requires every drop of performance boost we can give. Will it be beneficial if we upgrade from 5.0.23 to mysql 5.5? Also, we have lots of database indexes setup on the tables and I've been told that sometimes the indexes become corrupt after a version upgrade and they have to be rebuilt. Is this true?

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  • Problems with Update Manager

    - by user65965
    Whenever I try to update with update manager I get the following errors: W:Failed to fetch http://archive.ubuntu.com/ubuntu/dists/precise/Release Unable to find expected entry 'commercial/source/Sources' in Release file (Wrong sources.list entry or malformed file) W:Failed to fetch http://archive.ubuntu.com/ubuntu/dists/precise-updates/Release Unable to find expected entry 'commercial/source/Sources' in Release file (Wrong sources.list entry or malformed file) W:Failed to fetch http://archive.ubuntu.com/ubuntu/dists/precise-backports/Release Unable to find expected entry 'commercial/source/Sources' in Release file (Wrong sources.list entry or malformed file) W:Failed to fetch http://archive.ubuntu.com/ubuntu/dists/precise-security/Release Unable to find expected entry 'commercial/source/Sources' in Release file (Wrong sources.list entry or malformed file) W:Failed to fetch http://ppa.launchpad.net/iefremov/ppa/ubuntu/dists/precise/main/source/Sources 404 Not Found W:Failed to fetch http://ppa.launchpad.net/iefremov/ppa/ubuntu/dists/precise/main/binary-amd64/Packages 404 Not Found W:Failed to fetch http://ppa.launchpad.net/iefremov/ppa/ubuntu/dists/precise/main/binary-i386/Packages 404 Not Found E:Some index files failed to download. They have been ignored, or old ones used instead. Any help would be much appreciated, thank you. Thank you very much Eliah. I'm still pretty new to Ubuntu. Here's the output I got from the terminal: No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 12.04 LTS Release: 12.04 Codename: precise # See http://help.ubuntu.com/community/UpgradeNotes for how to upgrade to # newer versions of the distribution. deb http://archive.ubuntu.com/ubuntu precise main restricted commercial deb-src http://archive.ubuntu.com/ubuntu precise restricted main commercial multiverse universe #Added by software-properties ## Major bug fix updates produced after the final release of the ## distribution. deb http://archive.ubuntu.com/ubuntu precise-updates main restricted commercial deb-src http://archive.ubuntu.com/ubuntu precise-updates restricted main commercial multiverse universe #Added by software-properties ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu ## team. Also, please note that software in universe WILL NOT receive any ## review or updates from the Ubuntu security team. deb http://archive.ubuntu.com/ubuntu precise universe deb http://archive.ubuntu.com/ubuntu precise-updates universe ## N.B. software from this repository is ENTIRELY UNSUPPORTED by the Ubuntu ## team, and may not be under a free licence. Please satisfy yourself as to ## your rights to use the software. Also, please note that software in ## multiverse WILL NOT receive any review or updates from the Ubuntu ## security team. deb http://archive.ubuntu.com/ubuntu precise multiverse deb http://archive.ubuntu.com/ubuntu precise-updates multiverse ## N.B. software from this repository may not have been tested as ## extensively as that contained in the main release, although it includes ## newer versions of some applications which may provide useful features. ## Also, please note that software in backports WILL NOT receive any review ## or updates from the Ubuntu security team. deb http://archive.ubuntu.com/ubuntu precise-backports main restricted universe multiverse commercial deb-src http://archive.ubuntu.com/ubuntu precise-backports main restricted universe multiverse commercial #Added by software-properties deb http://archive.ubuntu.com/ubuntu precise-security main restricted commercial deb-src http://archive.ubuntu.com/ubuntu precise-security restricted main commercial multiverse universe #Added by software-properties deb http://archive.ubuntu.com/ubuntu precise-security universe deb http://archive.ubuntu.com/ubuntu precise-security multiverse ## Uncomment the following two lines to add software from Canonical's ## 'partner' repository. ## This software is not part of Ubuntu, but is offered by Canonical and the ## respective vendors as a service to Ubuntu users. deb http://archive.canonical.com/ubuntu oneiric partner deb-src http://archive.canonical.com/ubuntu precise partner ## This software is not part of Ubuntu, but is offered by third-party ## developers who want to ship their latest software. deb http://extras.ubuntu.com/ubuntu precise main deb-src http://extras.ubuntu.com/ubuntu precise main ## This is a 3rd party script to install and update Oracle Java deb http://www.duinsoft.nl/pkg debs all ## Sun-Java6-JRE deb http://security.ubuntu.com/ubuntu hardy-security main multiverse ** /etc/apt/sources.list.d/askubuntu-tools-ppa-precise.list: deb http://ppa.launchpad.net/askubuntu-tools/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/askubuntu-tools/ppa/ubuntu precise main ** /etc/apt/sources.list.d/askubuntu-tools-ppa-precise.list.save: deb http://ppa.launchpad.net/askubuntu-tools/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/askubuntu-tools/ppa/ubuntu precise main ** /etc/apt/sources.list.d/effie-jayx-turpial-oneiric.list: deb http://ppa.launchpad.net/effie-jayx/turpial/ubuntu precise main # disabled on upgrade to precise deb-src http://ppa.launchpad.net/effie-jayx/turpial/ubuntu precise main # disabled on upgrade to precise ** /etc/apt/sources.list.d/effie-jayx-turpial-oneiric.list.distUpgrade: deb http://ppa.launchpad.net/effie-jayx/turpial/ubuntu oneiric main deb-src http://ppa.launchpad.net/effie-jayx/turpial/ubuntu oneiric main ** /etc/apt/sources.list.d/effie-jayx-turpial-oneiric.list.save: deb http://ppa.launchpad.net/effie-jayx/turpial/ubuntu precise main # disabled on upgrade to precise deb-src http://ppa.launchpad.net/effie-jayx/turpial/ubuntu precise main # disabled on upgrade to precise ** /etc/apt/sources.list.d/getdeb.list: # deb http://archive.getdeb.net/ubuntu oneiric-getdeb apps # disabled on upgrade to precise ** /etc/apt/sources.list.d/getdeb.list.distUpgrade: deb http://archive.getdeb.net/ubuntu oneiric-getdeb apps ** /etc/apt/sources.list.d/getdeb.list.save: # deb http://archive.getdeb.net/ubuntu oneiric-getdeb apps # disabled on upgrade to precise ** /etc/apt/sources.list.d/hotot-team-ppa-oneiric.list: deb http://ppa.launchpad.net/hotot-team/ppa/ubuntu precise main # disabled on upgrade to precise deb-src http://ppa.launchpad.net/hotot-team/ppa/ubuntu precise main # disabled on upgrade to precise ** /etc/apt/sources.list.d/hotot-team-ppa-oneiric.list.distUpgrade: deb http://ppa.launchpad.net/hotot-team/ppa/ubuntu oneiric main deb-src http://ppa.launchpad.net/hotot-team/ppa/ubuntu oneiric main ** /etc/apt/sources.list.d/hotot-team-ppa-oneiric.list.save: deb http://ppa.launchpad.net/hotot-team/ppa/ubuntu precise main # disabled on upgrade to precise deb-src http://ppa.launchpad.net/hotot-team/ppa/ubuntu precise main # disabled on upgrade to precise ** /etc/apt/sources.list.d/iefremov-ppa-precise.list: deb http://ppa.launchpad.net/iefremov/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/iefremov/ppa/ubuntu precise main ** /etc/apt/sources.list.d/iefremov-ppa-precise.list.save: deb http://ppa.launchpad.net/iefremov/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/iefremov/ppa/ubuntu precise main ** /etc/apt/sources.list.d/jockey.list: deb http://www.openprinting.org/download/printdriver/debian/ lsb3.2 main-nonfree # disabled on upgrade to precise ** /etc/apt/sources.list.d/jockey.list.distUpgrade: deb http://www.openprinting.org/download/printdriver/debian/ lsb3.2 main-nonfree ** /etc/apt/sources.list.d/jockey.list.save: deb http://www.openprinting.org/download/printdriver/debian/ lsb3.2 main-nonfree # disabled on upgrade to precise ** /etc/apt/sources.list.d/plexydesk-plexydesk-dailybuild-precise.list: deb http://ppa.launchpad.net/plexydesk/plexydesk-dailybuild/ubuntu precise main deb-src http://ppa.launchpad.net/plexydesk/plexydesk-dailybuild/ubuntu precise main ** /etc/apt/sources.list.d/plexydesk-plexydesk-dailybuild-precise.list.save: deb http://ppa.launchpad.net/plexydesk/plexydesk-dailybuild/ubuntu precise main deb-src http://ppa.launchpad.net/plexydesk/plexydesk-dailybuild/ubuntu precise main ** /etc/apt/sources.list.d/precise-partner.list: deb http://archive.canonical.com/ubuntu precise partner #Added by software-center ** /etc/apt/sources.list.d/precise-partner.list.save: deb http://archive.canonical.com/ubuntu precise partner #Added by software-center ** /etc/apt/sources.list.d/private-ppa.launchpad.net_commercial-ppa-uploaders_crossover-pro_ubuntu.list: # deb https://justin-dormandy:[email protected]/commercial-ppa-uploaders/crossover-pro/ubuntu precise main #Added by software-center disabled on upgrade to precise ** /etc/apt/sources.list.d/private-ppa.launchpad.net_commercial-ppa-uploaders_crossover-pro_ubuntu.list.distUpgrade: cat: /etc/apt/sources.list.d/private-ppa.launchpad.net_commercial-ppa-uploaders_crossover-pro_ubuntu.list.distUpgrade: Permission denied ** /etc/apt/sources.list.d/private-ppa.launchpad.net_commercial-ppa-uploaders_crossover-pro_ubuntu.list.save: cat: /etc/apt/sources.list.d/private-ppa.launchpad.net_commercial-ppa-uploaders_crossover-pro_ubuntu.list.save: Permission denied ** /etc/apt/sources.list.d/screenlets-ppa-precise.list: deb http://ppa.launchpad.net/screenlets/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/screenlets/ppa/ubuntu precise main ** /etc/apt/sources.list.d/screenlets-ppa-precise.list.save: deb http://ppa.launchpad.net/screenlets/ppa/ubuntu precise main deb-src http://ppa.launchpad.net/screenlets/ppa/ubuntu precise main ** /etc/apt/sources.list.d/webupd8team-java-precise.list: deb http://ppa.launchpad.net/webupd8team/java/ubuntu precise main deb-src http://ppa.launchpad.net/webupd8team/java/ubuntu precise main ** /etc/apt/sources.list.d/webupd8team-java-precise.list.save: deb http://ppa.launchpad.net/webupd8team/java/ubuntu precise main deb-src http://ppa.launchpad.net/webupd8team/java/ubuntu precise main

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  • web.xml not reloading in tomcat even after stop/start

    - by ajay
    This is in relation to:- http://stackoverflow.com/questions/2576514/basic-tomcat-servlet-error I changed my web.xml file, did ant compile , all, /etc/init.d/tomcat stop , start Even then my web.xml file in tomcat deployment is still unchanged. This is build.properties file:- app.name=hello catalina.home=/usr/local/tomcat manager.username=admin manager.password=admin This is my build.xml file. Is there something wrong with this:- <!-- Licensed to the Apache Software Foundation (ASF) under one or more contributor license agreements. See the NOTICE file distributed with this work for additional information regarding copyright ownership. The ASF licenses this file to You under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License. --> <!-- General purpose build script for web applications and web services, including enhanced support for deploying directly to a Tomcat 6 based server. This build script assumes that the source code of your web application is organized into the following subdirectories underneath the source code directory from which you execute the build script: docs Static documentation files to be copied to the "docs" subdirectory of your distribution. src Java source code (and associated resource files) to be compiled to the "WEB-INF/classes" subdirectory of your web applicaiton. web Static HTML, JSP, and other content (such as image files), including the WEB-INF subdirectory and its configuration file contents. $Id: build.xml.txt 562814 2007-08-05 03:52:04Z markt $ --> <!-- A "project" describes a set of targets that may be requested when Ant is executed. The "default" attribute defines the target which is executed if no specific target is requested, and the "basedir" attribute defines the current working directory from which Ant executes the requested task. This is normally set to the current working directory. --> <project name="My Project" default="compile" basedir="."> <!-- ===================== Property Definitions =========================== --> <!-- Each of the following properties are used in the build script. Values for these properties are set by the first place they are defined, from the following list: * Definitions on the "ant" command line (ant -Dfoo=bar compile). * Definitions from a "build.properties" file in the top level source directory of this application. * Definitions from a "build.properties" file in the developer's home directory. * Default definitions in this build.xml file. You will note below that property values can be composed based on the contents of previously defined properties. This is a powerful technique that helps you minimize the number of changes required when your development environment is modified. Note that property composition is allowed within "build.properties" files as well as in the "build.xml" script. --> <property file="build.properties"/> <property file="${user.home}/build.properties"/> <!-- ==================== File and Directory Names ======================== --> <!-- These properties generally define file and directory names (or paths) that affect where the build process stores its outputs. app.name Base name of this application, used to construct filenames and directories. Defaults to "myapp". app.path Context path to which this application should be deployed (defaults to "/" plus the value of the "app.name" property). app.version Version number of this iteration of the application. build.home The directory into which the "prepare" and "compile" targets will generate their output. Defaults to "build". catalina.home The directory in which you have installed a binary distribution of Tomcat 6. This will be used by the "deploy" target. dist.home The name of the base directory in which distribution files are created. Defaults to "dist". manager.password The login password of a user that is assigned the "manager" role (so that he or she can execute commands via the "/manager" web application) manager.url The URL of the "/manager" web application on the Tomcat installation to which we will deploy web applications and web services. manager.username The login username of a user that is assigned the "manager" role (so that he or she can execute commands via the "/manager" web application) --> <property name="app.name" value="myapp"/> <property name="app.path" value="/${app.name}"/> <property name="app.version" value="0.1-dev"/> <property name="build.home" value="${basedir}/build"/> <property name="catalina.home" value="../../../.."/> <!-- UPDATE THIS! --> <property name="dist.home" value="${basedir}/dist"/> <property name="docs.home" value="${basedir}/docs"/> <property name="manager.url" value="http://localhost:8080/manager"/> <property name="src.home" value="${basedir}/src"/> <property name="web.home" value="${basedir}/web"/> <!-- ==================== External Dependencies =========================== --> <!-- Use property values to define the locations of external JAR files on which your application will depend. In general, these values will be used for two purposes: * Inclusion on the classpath that is passed to the Javac compiler * Being copied into the "/WEB-INF/lib" directory during execution of the "deploy" target. Because we will automatically include all of the Java classes that Tomcat 6 exposes to web applications, we will not need to explicitly list any of those dependencies. You only need to worry about external dependencies for JAR files that you are going to include inside your "/WEB-INF/lib" directory. --> <!-- Dummy external dependency --> <!-- <property name="foo.jar" value="/path/to/foo.jar"/> --> <!-- ==================== Compilation Classpath =========================== --> <!-- Rather than relying on the CLASSPATH environment variable, Ant includes features that makes it easy to dynamically construct the classpath you need for each compilation. The example below constructs the compile classpath to include the servlet.jar file, as well as the other components that Tomcat makes available to web applications automatically, plus anything that you explicitly added. --> <path id="compile.classpath"> <!-- Include all JAR files that will be included in /WEB-INF/lib --> <!-- *** CUSTOMIZE HERE AS REQUIRED BY YOUR APPLICATION *** --> <!-- <pathelement location="${foo.jar}"/> --> <!-- Include all elements that Tomcat exposes to applications --> <fileset dir="${catalina.home}/bin"> <include name="*.jar"/> </fileset> <pathelement location="${catalina.home}/lib"/> <fileset dir="${catalina.home}/lib"> <include name="*.jar"/> </fileset> </path> <!-- ================== Custom Ant Task Definitions ======================= --> <!-- These properties define custom tasks for the Ant build tool that interact with the "/manager" web application installed with Tomcat 6. Before they can be successfully utilized, you must perform the following steps: - Copy the file "lib/catalina-ant.jar" from your Tomcat 6 installation into the "lib" directory of your Ant installation. - Create a "build.properties" file in your application's top-level source directory (or your user login home directory) that defines appropriate values for the "manager.password", "manager.url", and "manager.username" properties described above. For more information about the Manager web application, and the functionality of these tasks, see <http://localhost:8080/tomcat-docs/manager-howto.html>. --> <taskdef resource="org/apache/catalina/ant/catalina.tasks" classpathref="compile.classpath"/> <!-- ==================== Compilation Control Options ==================== --> <!-- These properties control option settings on the Javac compiler when it is invoked using the <javac> task. compile.debug Should compilation include the debug option? compile.deprecation Should compilation include the deprecation option? compile.optimize Should compilation include the optimize option? --> <property name="compile.debug" value="true"/> <property name="compile.deprecation" value="false"/> <property name="compile.optimize" value="true"/> <!-- ==================== All Target ====================================== --> <!-- The "all" target is a shortcut for running the "clean" target followed by the "compile" target, to force a complete recompile. --> <target name="all" depends="clean,compile" description="Clean build and dist directories, then compile"/> <!-- ==================== Clean Target ==================================== --> <!-- The "clean" target deletes any previous "build" and "dist" directory, so that you can be ensured the application can be built from scratch. --> <target name="clean" description="Delete old build and dist directories"> <delete dir="${build.home}"/> <delete dir="${dist.home}"/> </target> <!-- ==================== Compile Target ================================== --> <!-- The "compile" target transforms source files (from your "src" directory) into object files in the appropriate location in the build directory. This example assumes that you will be including your classes in an unpacked directory hierarchy under "/WEB-INF/classes". --> <target name="compile" depends="prepare" description="Compile Java sources"> <!-- Compile Java classes as necessary --> <mkdir dir="${build.home}/WEB-INF/classes"/> <javac srcdir="${src.home}" destdir="${build.home}/WEB-INF/classes" debug="${compile.debug}" deprecation="${compile.deprecation}" optimize="${compile.optimize}"> <classpath refid="compile.classpath"/> </javac> <!-- Copy application resources --> <copy todir="${build.home}/WEB-INF/classes"> <fileset dir="${src.home}" excludes="**/*.java"/> </copy> </target> <!-- ==================== Dist Target ===================================== --> <!-- The "dist" target creates a binary distribution of your application in a directory structure ready to be archived in a tar.gz or zip file. Note that this target depends on two others: * "compile" so that the entire web application (including external dependencies) will have been assembled * "javadoc" so that the application Javadocs will have been created --> <target name="dist" depends="compile,javadoc" description="Create binary distribution"> <!-- Copy documentation subdirectories --> <mkdir dir="${dist.home}/docs"/> <copy todir="${dist.home}/docs"> <fileset dir="${docs.home}"/> </copy> <!-- Create application JAR file --> <jar jarfile="${dist.home}/${app.name}-${app.version}.war" basedir="${build.home}"/> <!-- Copy additional files to ${dist.home} as necessary --> </target> <!-- ==================== Install Target ================================== --> <!-- The "install" target tells the specified Tomcat 6 installation to dynamically install this web application and make it available for execution. It does *not* cause the existence of this web application to be remembered across Tomcat restarts; if you restart the server, you will need to re-install all this web application. If you have already installed this application, and simply want Tomcat to recognize that you have updated Java classes (or the web.xml file), use the "reload" target instead. NOTE: This target will only succeed if it is run from the same server that Tomcat is running on. NOTE: This is the logical opposite of the "remove" target. --> <target name="install" depends="compile" description="Install application to servlet container"> <deploy url="${manager.url}" username="${manager.username}" password="${manager.password}" path="${app.path}" localWar="file://${build.home}"/> </target> <!-- ==================== Javadoc Target ================================== --> <!-- The "javadoc" target creates Javadoc API documentation for the Java classes included in your application. Normally, this is only required when preparing a distribution release, but is available as a separate target in case the developer wants to create Javadocs independently. --> <target name="javadoc" depends="compile" description="Create Javadoc API documentation"> <mkdir dir="${dist.home}/docs/api"/> <javadoc sourcepath="${src.home}" destdir="${dist.home}/docs/api" packagenames="*"> <classpath refid="compile.classpath"/> </javadoc> </target> <!-- ====================== List Target =================================== --> <!-- The "list" target asks the specified Tomcat 6 installation to list the currently running web applications, either loaded at startup time or installed dynamically. It is useful to determine whether or not the application you are currently developing has been installed. --> <target name="list" description="List installed applications on servlet container"> <list url="${manager.url}" username="${manager.username}" password="${manager.password}"/> </target> <!-- ==================== Prepare Target ================================== --> <!-- The "prepare" target is used to create the "build" destination directory, and copy the static contents of your web application to it. If you need to copy static files from external dependencies, you can customize the contents of this task. Normally, this task is executed indirectly when needed. --> <target name="prepare"> <!-- Create build directories as needed --> <mkdir dir="${build.home}"/> <mkdir dir="${build.home}/WEB-INF"/> <mkdir dir="${build.home}/WEB-INF/classes"/> <!-- Copy static content of this web application --> <copy todir="${build.home}"> <fileset dir="${web.home}"/> </copy> <!-- Copy external dependencies as required --> <!-- *** CUSTOMIZE HERE AS REQUIRED BY YOUR APPLICATION *** --> <mkdir dir="${build.home}/WEB-INF/lib"/> <!-- <copy todir="${build.home}/WEB-INF/lib" file="${foo.jar}"/> --> <!-- Copy static files from external dependencies as needed --> <!-- *** CUSTOMIZE HERE AS REQUIRED BY YOUR APPLICATION *** --> </target> <!-- ==================== Reload Target =================================== --> <!-- The "reload" signals the specified application Tomcat 6 to shut itself down and reload. This can be useful when the web application context is not reloadable and you have updated classes or property files in the /WEB-INF/classes directory or when you have added or updated jar files in the /WEB-INF/lib directory. NOTE: The /WEB-INF/web.xml web application configuration file is not reread on a reload. If you have made changes to your web.xml file you must stop then start the web application. --> <target name="reload" depends="compile" description="Reload application on servlet container"> <reload url="${manager.url}" username="${manager.username}" password="${manager.password}" path="${app.path}"/> </target> <!-- ==================== Remove Target =================================== --> <!-- The "remove" target tells the specified Tomcat 6 installation to dynamically remove this web application from service. NOTE: This is the logical opposite of the "install" target. --> <target name="remove" description="Remove application on servlet container"> <undeploy url="${manager.url}" username="${manager.username}" password="${manager.password}" path="${app.path}"/> </target> </project>

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  • How can I login to lightdm with password for fingerprint-enabled user after 12.10 upgrade?

    - by jxn
    Sorry for the long question. I have a laptop with ubuntu quantal 12.10, a fingerprint scanner, and a few active user accounts. When the machine boots up to lightdm, I get a prompt toenter my password or scan my finger print. Every now and then, fingerprint scanning just doesn't seem to work. Before the 12.10 upgrade, I was always able to enter my password for this user when fingerprint failed. Now, no matter what, I have to scan my prints to login as this user. If I try to login as a different user (fingerprint is not enabled for any others), I can see the password is typed out -- asterisks show in the password input box as I type them -- and get in. Not so for the fingerprint user. Any clues on how to figure out what's gone wrong?

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  • TFS 2012 Upgrade and SQL Server - SharePoint - OS Requirements.

    - by Vishal
    Hello folks,Recently I was involved in Installation and Configuration of Team Foundation Server 2010 Farm for a client. A month after the installation and configuration was done and everything was working as it was supposed to, Microsoft released Team Foundation Server 2012 in mid August 2012. Well the company was using Borland Starteam as their source control and once starting to use TFS 2010, their developers and project managers were loving it since TFS is not just a source control tool and way much better then StarTeam. Anyways, long story short, they are now interested in thinking of upgrading to the newest version. Below are some basic Hardware and Software requirements for TFS 2012:Operating System:Windows Server 2008 with SP2 (only 64bit)Windows Server 2008 R2 with SP1 (only 64bit)Windows Server 2012 (only 64bit)SQL Server:SQL Server 2008 R2 and SQL Server 2012SQL Server 2008 is no longer supported.SQL Server Requirements for TFS.SharePoint Products:SharePoint Server 2010. (SharePoint Foundation 2010, Standard, Enterprise).MOSS 2007 (Standard, Enterprise)Windows SharePoint Services 3.0 (WSS 3.0)SharePoint Products Requirements for TFS.Project Server:Project Server 2010 with SP1.Project Server 2007 with SP2.Project Server Requirements for TFS.More information onf TFS Upgrade Requirements can be found here. Hardware Recommendations can be found here.Thanks,Vishal Mody

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  • Kernel Panic - not syncing: VFS: Unable to mount root fs on unknown-block(0,0) after apt-get upgrade

    - by Edward
    I'm using Ubuntu 9.1 server edition, I get this error during boot time after I ran sudo apt-get upgrade when checking my kernel version, uname -r returns 2.6.31-14-generic but when i run dpkg -l 'linux-image*' | grep ^.i I cannot find 2.6.31-14 (only contains 2.6.32*) Following the solution in the thread: Kernel Panic - not syncing: VFS: Unable to mount root fs on unknown-block(0,0) doesn't work for me I'm running the commands inside the Rescue mode by booting from the Ubuntu 9.1 Installation Disc Do I need to update my kernel and run update-initramfs + update-grub again? If so, how can I update the kernel? apt-get install any linux-headers/image cannot change the uname -r value Thanks!

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  • How can I upgrade from Ubuntu 9.10 to 11.10?

    - by Chinnu
    We need to program in CUDA 5.0 which can be installed only on ubuntu 11.10 or 12.04. Our current version, 9.10, is no longer supported, so we chose to proceed with a clean installation. Since we have a shared workstation, we used clonezilla for cloning the system. However, booting from the LiveCD showed an unexpected error. We also tried to install 11.10 in an external HDD by partitioning it, but Gparted could not be installed, and terminated with the error "installArchives() failed" which we couldn't solve even after modifying the sources.list. Is there a way to proceed with this upgrade?

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  • After upgrade my webcam mic records fast, high pitched, and squeaky only in Skype (maybe Sound Recorder problem too)

    - by Dennis
    After an upgrade to 11.10 which probably also updated Skype to 2.2.35 (not sure because I never checked the version before) the sound that comes back from an echo test is very high pitched and squeaky. I'm not sure if when in a call if the other person can't hear or just doesn't know what they are hearing. I am using a USB Logitech C250 Audacity records fine, gmail video chat works fine, but if I start sound recorder I get a "Could not negotiate format", followed by "Could not get/set settings from/on resource". I don't know if this is a Skype problem or a wider Pulse problem. My only real needs are the gmail and Audacity, though I have a couple of contacts that I can only Skype with.

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  • ???Oracle EBS R12.1.1 Upgrade ?R12.1.2 ??

    - by longchun.zhu
    ??????EBS R12.1.1 ???,????,???????????,???????,?????????, ??????????,????,???? 2 ???,?????,???SR ,?????BUG??? ??: - Oracle Linux 5.2 (x86_64bit) - Oracle EBS R12.1.1 (x86_64bit) upgrade R12.1.2 - DB:11.1.0.7 ??????: ??: - ?Oracle AS 10g ??? - ?Oracle AS 10G for Forms and reports ??? - ???DBA UP2 ???8502056 - ?7303033 US ?? ### ??????,?????. - ?8937577 US ?? - ?7303033 CHS ?? - ?8937577 CHS ?? - ????APPS DBA ???????,autocfg ??appsutil.zip ?? ?????,?????HRMS ???,?????????? ?????1: 2?FORM ????? 2. ????66??????

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  • How do I upgrade PHP on CentOS and Kloxo?

    - by Emerson
    I need to upgrade PHP so that I can upgrade joomla on my dedicated server. I have: kloxo 6.1.6 php-5.2.17-1 Linux CentOS-55-64-minimal 2.6.18-194.32.1.el5 x86_64 x86_64 x86_64 GNU/Linux I searched everywhere and I could only find that PHP 5.3 isn't compatible with zend. I would like to upgrade to 5.2.4, which is the minimum for joomla 1.6 and 1.7. I tried to run: yum update php.x86_64 Which is the PHP package installed, but it didn't work. This is a production server with quite a few users across many sites, so I wanted to do it as safely as possible. Is it safe to run "yum update"? It showed me 6 packages to install and 125 packages to update, including a kernel. Is that safe? I haven't touched kloxo's yum repositories. Update: I just successfully ran "yum update". Now I think I need to know how to add a new repository that has the 5.2.4 and how to update to that specific version. Any ideas?

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  • Upgrading from TFS 2010 RC to TFS 2010 RTM done

    - by Martin Hinshelwood
    Today is the big day, with the Launch of Visual Studio 2010 already done in Asia, and rolling around the world towards us, we are getting ready for the RTM (Released). We have had TFS 2010 in Production for nearly 6 months and have had only minimal problems. Update 12th April 2010  – Added Scott Hanselman’s tweet about the MSDN download release time. SSW was the first company in the world outside of Microsoft to deploy Visual Studio 2010 Team Foundation Server to production, not once, but twice. I am hoping to make it 3 in a row, but with all the hype around the new version, and with it being a production release and not just a go-live, I think there will be a lot of competition. Developers: MSDN will be updated with #vs2010 downloads and details at 10am PST *today*! @shanselman - Scott Hanselman Same as before, we need to Uninstall 2010 RC and install 2010 RTM. The installer will take care of all the complexity of actually upgrading any schema changes. If you are upgrading from TFS 2008 to TFS2010 you can follow our Rules To Better TFS 2010 Migration and read my post on our successes.   We run TFS 2010 in a Hyper-V virtual environment, so we have the advantage of running a snapshot as well as taking a DB backup. Done - Snapshot the hyper-v server Microsoft does not support taking a snapshot of a running server, for very good reason, and Brian Harry wrote a post after my last upgrade with the reason why you should never snapshot a running server. Done - Uninstall Visual Studio Team Explorer 2010 RC You will need to uninstall all of the Visual Studio 2010 RC client bits that you have on the server. Done - Uninstall TFS 2010 RC Done - Install TFS 2010 RTM Done - Configure TFS 2010 RTM Pick the Upgrade option and point it at your existing “tfs_Configuration” database to load all of the existing settings Done - Upgrade the SharePoint Extensions Upgrade Build Servers (Pending) Test the server The back out plan, and you should always have one, is to restore the snapshot. Upgrading to Team Foundation Server 2010 – Done The first thing you need to do is off the TFS server and then log into the Hyper-v server and create a snapshot. Figure: Make sure you turn the server off and delete all old snapshots before you take a new one I noticed that the snapshot that was taken before the Beta 2 to RC upgrade was still there. You should really delete old snapshots before you create a new one, but in this case the SysAdmin (who is currently tucked up in bed) asked me not to. I guess he is worried about a developer messing up his server Turn your server on and wait for it to boot in anticipation of all the nice shiny RTM’ness that is coming next. The upgrade procedure for TFS2010 is to uninstal the old version and install the new one. Figure: Remove Visual Studio 2010 Team Foundation Server RC from the system.   Figure: Most of the heavy lifting is done by the Uninstaller, but make sure you have removed any of the client bits first. Specifically Visual Studio 2010 or Team Explorer 2010.  Once the uninstall is complete, this took around 5 minutes for me, you can begin the install of the RTM. Running the 64 bit OS will allow the application to use more than 2GB RAM, which while not common may be of use in heavy load situations. Figure: It is always recommended to install the 64bit version of a server application where possible. I do not think it is likely, with SharePoint 2010 and Exchange 2010  and even Windows Server 2008 R2 being 64 bit only, I do not think there will be another release of a server app that is 32bit. You then need to choose what it is you want to install. This depends on how you are running TFS and on how many servers. In our case we run TFS and the Team Foundation Build Service (controller only) on out TFS server along with Analysis services and Reporting Services. But our SharePoint server lives elsewhere. Figure: This always confuses people, but in reality it makes sense. Don’t install what you do not need. Every extra you install has an impact of performance. If you are integrating with SharePoint you will need to run this install on every Front end server in your farm and don’t forget to upgrade your Build servers and proxy servers later. Figure: Selecting only Team Foundation Server (TFS) and Team Foundation Build Services (TFBS)   It is worth noting that if you have a lot of builds kicking off, and hence a lot of get operations against your TFS server, you can use a proxy server to cache the source control on another server in between your TFS server and your build servers. Figure: Installing Microsoft .NET Framework 4 takes the most time. Figure: Now run Windows Update, and SSW Diagnostic to make sure all your bits and bobs are up to date. Note: SSW Diagnostic will check your Power Tools, Add-on’s, Check in Policies and other bits as well. Configure Team Foundation Server 2010 – Done Now you can configure the server. If you have no key you will need to pick “Install a Trial Licence”, but it is only £500, or free with a MSDN subscription. Anyway, if you pick Trial you get 90 days to get your key. Figure: You can pick trial and add your key later using the TFS Server Admin. Here is where the real choices happen. We are doing an Upgrade from a previous version, so I will pick Upgrade the same as all you folks that are using the RC or TFS 2008. Figure: The upgrade wizard takes your existing 2010 or 2008 databases and upgraded them to the release.   Once you have entered your database server name you can click “List available databases” and it will show what it can upgrade. Figure: Select your database from the list and at this point, make sure you have a valid backup. At this point you have not made ANY changes to the databases. At this point the configuration wizard will load configuration from your existing database if you have one. If you are upgrading TFS 2008 refer to Rules To Better TFS 2010 Migration. Mostly during the wizard the default values will suffice, but depending on the configuration you want you can pick different options. Figure: Set the application tier account and Authentication method to use. We use NTLM to keep things simple as we host our TFS server externally for our remote developers.  Figure: Setting your TFS server URL’s to be the remote URL’s allows the reports to be accessed without using VPN. Very handy for those remote developers. Figure: Detected the existing Warehouse no problem. Figure: Again we love green ticks. It gives us a warm fuzzy feeling. Figure: The username for connecting to Reporting services should be a domain account (if you are on a domain that is). Figure: Setup the SharePoint integration to connect to your external SharePoint server. You can take the option to connect later.   You then need to run all of your readiness checks. These check can save your life! it will check all of the settings that you have entered as well as checking all the external services are configures and running properly. There are two reasons that TFS 2010 is so easy and painless to install where previous version were not. Microsoft changes the install to two steps, Install and configuration. The second reason is that they have pulled out all of the stops in making the install run all the checks necessary to make sure that once you start the install that it will complete. if you find any errors I recommend that you report them on http://connect.microsoft.com so everyone can benefit from your misery.   Figure: Now we have everything setup the configuration wizard can do its work.  Figure: Took a while on the “Web site” stage for some point, but zipped though after that.  Figure: last wee bit. TFS Needs to do a little tinkering with the data to complete the upgrade. Figure: All upgraded. I am not worried about the yellow triangle as SharePoint was being a little silly Exception Message: TF254021: The account name or password that you specified is not valid. (type TfsAdminException) Exception Stack Trace:    at Microsoft.TeamFoundation.Management.Controls.WizardCommon.AccountSelectionControl.TestLogon(String connectionString)    at System.ComponentModel.BackgroundWorker.WorkerThreadStart(Object argument) [Info   @16:10:16.307] Benign exception caught as part of verify: Exception Message: TF255329: The following site could not be accessed: http://projects.ssw.com.au/. The server that you specified did not return the expected response. Either you have not installed the Team Foundation Server Extensions for SharePoint Products on this server, or a firewall is blocking access to the specified site or the SharePoint Central Administration site. For more information, see the Microsoft Web site (http://go.microsoft.com/fwlink/?LinkId=161206). (type TeamFoundationServerException) Exception Stack Trace:    at Microsoft.TeamFoundation.Client.SharePoint.WssUtilities.VerifyTeamFoundationSharePointExtensions(ICredentials credentials, Uri url)    at Microsoft.TeamFoundation.Admin.VerifySharePointSitesUrl.Verify() Inner Exception Details: Exception Message: TF249064: The following Web service returned an response that is not valid: http://projects.ssw.com.au/_vti_bin/TeamFoundationIntegrationService.asmx. This Web service is used for the Team Foundation Server Extensions for SharePoint Products. Either the extensions are not installed, the request resulted in HTML being returned, or there is a problem with the URL. Verify that the following URL points to a valid SharePoint Web application and that the application is available: http://projects.ssw.com.au. If the URL is correct and the Web application is operating normally, verify that a firewall is not blocking access to the Web application. (type TeamFoundationServerInvalidResponseException) Exception Data Dictionary: ResponseStatusCode = InternalServerError I’ll look at SharePoint after, probably the SharePoint box just needs a restart or a kick If there is a problem with SharePoint it will come out in testing, But I will definatly be passing this on to Microsoft.   Upgrading the SharePoint connector to TFS 2010 You will need to upgrade the Extensions for SharePoint Products and Technologies on all of your SharePoint farm front end servers. To do this uninstall  the TFS 2010 RC from it in the same way as the server, and then install just the RTM Extensions. Figure: Only install the SharePoint Extensions on your SharePoint front end servers. TFS 2010 supports both SharePoint 2007 and SharePoint 2010.   Figure: When you configure SharePoint it uploads all of the solutions and templates. Figure: Everything is uploaded Successfully. Figure: TFS even remembered the settings from the previous installation, fantastic.   Upgrading the Team Foundation Build Servers to TFS 2010 Just like on the SharePoint servers you will need to upgrade the Build Server to the RTM. Just uninstall TFS 2010 RC and then install only the Team Foundation Build Services component. Unlike on the SharePoint server you will probably have some version of Visual Studio installed. You will need to remove this as well. (Coming Soon) Connecting Visual Studio 2010 / 2008 / 2005 and Eclipse to TFS2010 If you have developers still on Visual Studio 2005 or 2008 you will need do download the respective compatibility pack: Visual Studio Team System 2005 Service Pack 1 Forward Compatibility Update for Team Foundation Server 2010 Visual Studio Team System 2008 Service Pack 1 Forward Compatibility Update for Team Foundation Server 2010 If you are using Eclipse you can download the new Team Explorer Everywhere install for connecting to TFS. Get your developers to check that you have the latest version of your applications with SSW Diagnostic which will check for Service Packs and hot fixes to Visual Studio as well.   Technorati Tags: TFS,TFS2010,TFS 2010,Upgrade

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  • Creating Python C module from Fortran sources on Ubuntu 10.04 LTS

    - by Botondus
    In a project I work on we use a Python C module compiled from Fortran with f2py. I've had no issues building it on Windows 7 32bit (using mingw32) and on the servers it's built on 32bit Linux. But I've recently installed Ubuntu 10.04 LTS 64bit on my laptop that I use for development, and when I build it I get a lot of warnings (even though I've apparently installed all gcc/fortran libraries/compilers), but it does finish the build. However when I try to use the built module in the application, most of it seems to run well but then it crashes with an error: * glibc detected /home/botondus/Envs/gasit/bin/python: free(): invalid next size (fast): 0x0000000006a44760 ** Warnings on running *f2py -c -m module_name ./fortran/source.f90* customize UnixCCompiler customize UnixCCompiler using build_ext customize GnuFCompiler Could not locate executable g77 Found executable /usr/bin/f77 gnu: no Fortran 90 compiler found gnu: no Fortran 90 compiler found customize IntelFCompiler Could not locate executable ifort Could not locate executable ifc customize LaheyFCompiler Could not locate executable lf95 customize PGroupFCompiler Could not locate executable pgf90 Could not locate executable pgf77 customize AbsoftFCompiler Could not locate executable f90 absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found absoft: no Fortran 90 compiler found customize NAGFCompiler Found executable /usr/bin/f95 customize VastFCompiler customize GnuFCompiler gnu: no Fortran 90 compiler found gnu: no Fortran 90 compiler found customize CompaqFCompiler Could not locate executable fort customize IntelItaniumFCompiler Could not locate executable efort Could not locate executable efc customize IntelEM64TFCompiler customize Gnu95FCompiler Found executable /usr/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using build_ext I have tried building a 32bit version by installing the gfortran multilib packages and running f2py with -m32 option (but with no success): f2py -c -m module_name ./fortran/source.f90 --f77flags="-m32" --f90flags="-m32" Any suggestions on what I could try to either build 32bit version or correctly build the 64bit version? Edit: It looks like it crashes right at the end of a subroutine. The 'write' executes fine... which is strange. write(6,*)'Eh=',Eh end subroutine calcolo_involucro The full backtrace is very long and I'm not sure if it's any help, but here it is: *** glibc detected *** /home/botondus/Envs/gasit/bin/python: free(): invalid next size (fast): 0x0000000007884690 *** ======= Backtrace: ========= /lib/libc.so.6(+0x775b6)[0x7fe24f8f05b6] /lib/libc.so.6(cfree+0x73)[0x7fe24f8f6e53] /usr/local/lib/python2.6/dist-packages/numpy/core/multiarray.so(+0x4183c)[0x7fe24a18183c] /home/botondus/Envs/gasit/bin/python[0x46a50d] /usr/local/lib/python2.6/dist-packages/numpy/core/multiarray.so(+0x4fbd8)[0x7fe24a18fbd8] /usr/local/lib/python2.6/dist-packages/numpy/core/multiarray.so(+0x5aded)[0x7fe24a19aded] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x516e)[0x4a7c5e] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x5a60)[0x4a8550] /home/botondus/Envs/gasit/bin/python(PyEval_EvalCodeEx+0x911)[0x4a9671] /home/botondus/Envs/gasit/bin/python[0x537620] /home/botondus/Envs/gasit/bin/python(PyObject_Call+0x47)[0x41f0c7] /home/botondus/Envs/gasit/bin/python[0x427dff] /home/botondus/Envs/gasit/bin/python(PyObject_Call+0x47)[0x41f0c7] /home/botondus/Envs/gasit/bin/python[0x477bff] /home/botondus/Envs/gasit/bin/python[0x46f47f] /home/botondus/Envs/gasit/bin/python(PyObject_Call+0x47)[0x41f0c7] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x4888)[0x4a7378] /home/botondus/Envs/gasit/bin/python(PyEval_EvalCodeEx+0x911)[0x4a9671] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x4d19)[0x4a7809] /home/botondus/Envs/gasit/bin/python(PyEval_EvalCodeEx+0x911)[0x4a9671] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x4d19)[0x4a7809] /home/botondus/Envs/gasit/bin/python(PyEval_EvalCodeEx+0x911)[0x4a9671] /home/botondus/Envs/gasit/bin/python[0x537620] /home/botondus/Envs/gasit/bin/python(PyObject_Call+0x47)[0x41f0c7] /home/botondus/Envs/gasit/bin/python(PyEval_CallObjectWithKeywords+0x43)[0x4a1b03] /usr/local/lib/python2.6/dist-packages/numpy/core/multiarray.so(+0x2ee94)[0x7fe24a16ee94] /home/botondus/Envs/gasit/bin/python(_PyObject_Str+0x61)[0x454a81] /home/botondus/Envs/gasit/bin/python(PyObject_Str+0xa)[0x454b3a] /home/botondus/Envs/gasit/bin/python[0x461ad3] /home/botondus/Envs/gasit/bin/python[0x46f3b3] /home/botondus/Envs/gasit/bin/python(PyObject_Call+0x47)[0x41f0c7] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x4888)[0x4a7378] /home/botondus/Envs/gasit/bin/python(PyEval_EvalCodeEx+0x911)[0x4a9671] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x4d19)[0x4a7809] /home/botondus/Envs/gasit/bin/python(PyEval_EvalFrameEx+0x5a60)[0x4a8550] ======= Memory map: ======== 00400000-0061c000 r-xp 00000000 08:05 399145 /home/botondus/Envs/gasit/bin/python 0081b000-0081c000 r--p 0021b000 08:05 399145 /home/botondus/Envs/gasit/bin/python 0081c000-0087e000 rw-p 0021c000 08:05 399145 /home/botondus/Envs/gasit/bin/python 0087e000-0088d000 rw-p 00000000 00:00 0 01877000-07a83000 rw-p 00000000 00:00 0 [heap] 7fe240000000-7fe240021000 rw-p 00000000 00:00 0 7fe240021000-7fe244000000 ---p 00000000 00:00 0 7fe247631000-7fe2476b1000 r-xp 00000000 08:03 140646 /usr/lib/libfreetype.so.6.3.22 7fe2476b1000-7fe2478b1000 ---p 00080000 08:03 140646 /usr/lib/libfreetype.so.6.3.22 7fe2478b1000-7fe2478b6000 r--p 00080000 08:03 140646 /usr/lib/libfreetype.so.6.3.22 7fe2478b6000-7fe2478b7000 rw-p 00085000 08:03 140646 /usr/lib/libfreetype.so.6.3.22 7fe2478b7000-7fe2478bb000 r-xp 00000000 08:03 263882 /usr/lib/python2.6/dist-packages/PIL/_imagingft.so 7fe2478bb000-7fe247aba000 ---p 00004000 08:03 263882 /usr/lib/python2.6/dist-packages/PIL/_imagingft.so 7fe247aba000-7fe247abb000 r--p 00003000 08:03 263882 /usr/lib/python2.6/dist-packages/PIL/_imagingft.so 7fe247abb000-7fe247abc000 rw-p 00004000 08:03 263882 /usr/lib/python2.6/dist-packages/PIL/_imagingft.so 7fe247abc000-7fe247abf000 r-xp 00000000 08:03 266773 /usr/lib/python2.6/lib-dynload/_bytesio.so 7fe247abf000-7fe247cbf000 ---p 00003000 08:03 266773 /usr/lib/python2.6/lib-dynload/_bytesio.so 7fe247cbf000-7fe247cc0000 r--p 00003000 08:03 266773 /usr/lib/python2.6/lib-dynload/_bytesio.so 7fe247cc0000-7fe247cc1000 rw-p 00004000 08:03 266773 /usr/lib/python2.6/lib-dynload/_bytesio.so 7fe247cc1000-7fe247cc5000 r-xp 00000000 08:03 266786 /usr/lib/python2.6/lib-dynload/_fileio.so 7fe247cc5000-7fe247ec4000 ---p 00004000 08:03 266786 /usr/lib/python2.6/lib-dynload/_fileio.so 7fe247ec4000-7fe247ec5000 r--p 00003000 08:03 266786 /usr/lib/python2.6/lib-dynload/_fileio.so 7fe247ec5000-7fe247ec6000 rw-p 00004000 08:03 266786 /usr/lib/python2.6/lib-dynload/_fileio.so 7fe247ec6000-7fe24800c000 r-xp 00000000 08:03 141358 /usr/lib/libxml2.so.2.7.6 7fe24800c000-7fe24820b000 ---p 00146000 08:03 141358 /usr/lib/libxml2.so.2.7.6 7fe24820b000-7fe248213000 r--p 00145000 08:03 141358 /usr/lib/libxml2.so.2.7.6 7fe248213000-7fe248215000 rw-p 0014d000 08:03 141358 /usr/lib/libxml2.so.2.7.6 7fe248215000-7fe248216000 rw-p 00000000 00:00 0 7fe248216000-7fe248229000 r-xp 00000000 08:03 140632 /usr/lib/libexslt.so.0.8.15 7fe248229000-7fe248428000 ---p 00013000 08:03 140632 /usr/lib/libexslt.so.0.8.15 7fe248428000-7fe248429000 r--p 00012000 08:03 140632 /usr/lib/libexslt.so.0.8.15 7fe248429000-7fe24842a000 rw-p 00013000 08:03 140632 /usr/lib/libexslt.so.0.8.15 7fe24842a000-7fe248464000 r-xp 00000000 08:03 141360 /usr/lib/libxslt.so.1.1.26 7fe248464000-7fe248663000 ---p 0003a000 08:03 141360 /usr/lib/libxslt.so.1.1.26 7fe248663000-7fe248664000 r--p 00039000 08:03 141360 /usr/lib/libxslt.so.1.1.26 7fe248664000-7fe248665000 rw-p 0003a000 08:03 141360 /usr/lib/libxslt.so.1.1.26 7fe248665000-7fe24876e000 r-xp 00000000 08:03 534240 /usr/local/lib/python2.6/dist-packages/lxml/etree.so 7fe24876e000-7fe24896d000 ---p 00109000 08:03 534240 /usr/local/lib/python2.6/dist-packages/lxml/etree.so 7fe24896d000-7fe24896e000 r--p 00108000 08:03 534240 /usr/local/lib/python2.6/dist-packages/lxml/etree.so 7fe24896e000-7fe248999000 rw-p 00109000 08:03 534240 /usr/local/lib/python2.6/dist-packages/lxml/etree.so 7fe248999000-7fe2489a7000 rw-p 00000000 00:00 0 7fe2489a7000-7fe2489bd000 r-xp 00000000 08:03 132934 /lib/libgcc_s.so.1

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  • Groovy 1.7 changes "final"?

    - by Aaron L. Carlow
    Just started learning Groovy, got the PragProg book "Programming Groovy" and had a problem compiling one of the sample scripts: class GCar2 { final miles = 0 def getMiles() { println "getMiles called" miles } def drive(dist) { if (dist > 0) { miles += dist } } } def car = new GCar2() println "Miles: $car.miles" println 'Driving' car.drive(10) println "Miles: $car.miles" try { print 'Can I see the miles? ' car.miles = 12 } catch (groovy.lang.ReadOnlyPropertyException ex) { println ex.message GroovyCar2.groovy: 20: cannnot access final field or property outside of constructor. @ line 20, column 35. def drive(dist) { if (dist > 0) miles += dist } ^ Groovy versions prior to 1.7 do not give an error. I looked through whatever documentation I could find and did not see the issue discussed. What is going on here? Aaron

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  • Why am I not getting correct result when I calculate exponent with ^ in C++?

    - by xbonez
    I am using Bode's formuala to calculate distance of nth planet from sun dist = (4 + 3*(2^(n-2)))/10 If I calculate the distance this way, I get the right values: dist[2] = ((4 + 3*1)/10.0) ; dist[3] = ((4 + 3*2)/10.0) ; dist[4] = ((4 + 3*4)/10.0) ; But doing it this way, gives me incorrect values: vector <double> dist(5); for (unsigned int i = 2; i < 5; i++) { dist[i] = ((4 + 3*(2^(3-2)))/10.0) ; } Why so?

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  • [C++] Why am I not getting the same values?

    - by xbonez
    I am using Bode's formuala to calculate distance of nth planet from sun dist = (4 + 3*(2^(n-2)))/10 If I calculate the distance this way, I get the right values: dist[2] = ((4 + 3*1)/10.0) ; dist[3] = ((4 + 3*2)/10.0) ; dist[4] = ((4 + 3*4)/10.0) ; But doing it this way, gives me incorrect values: vector double> dist(5); for (unsigned int i = 2; i < 5; i++) { dist[i] = ((4 + 3*(2^(3-2)))/10.0) ; } ` Why so?

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  • Recent 12.04 Upgrade Makes My System and Internet Run Extremely SLOW!

    - by Sterling
    I'm running a Dell Inspiron 1564 with Windows7/Ubuntu dual booting. I haven't logged into the Ubuntu OS partition for some time until recently (trying to force myself into a Linux environment to learn) and when I did, It asked me to upgrade to 12.04 and so I did, restarted and since, everything seems to run extremely slow (startup, opening applications, running applications, switching windows, etc., etc... Another thing is that the Internet cuts out intermittently on my browser. Some pages within my Firefox tabs I can access, some I cant. Almost always while running Skype or some other Internet using application. So I know that I'm getting Internet, I can chat with friends over Skype but certain pages wont load during my Skype calls; the pages just hang upon resfreshing... I can eventually get the page to load after an indefinite amount of waiting and refreshing but this is very annoying. I am extremely new to Linux so I apologize in advance for my absolute ignorance. I am willing to post whatever information you Linux gurus have me type into the terminal in hopes that you can help me =) Thanks in advance!

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  • 7u10: JavaFX packaging tools update

    - by igor
    Last weeks were very busy here in Oracle. JavaOne 2012 is next week. Come to see us there! Meanwhile i'd like to quickly update you on recent developments in the area of packaging tools. This is an area of ongoing development for the team, and we are  continuing to refine and improve both the tools and the process. Thanks to everyone who shared experiences and suggestions with us. We are listening and fixed many of reported issues. Please keep them coming as comments on the blog or (even better) file issues directly to the JIRA. In this post i'll focus on several new packaging features added in JDK 7 update 10: Self-Contained Applications: Select Java Runtime to bundle Self-Contained Applications: Create Package without Java Runtime Self-Contained Applications: Package non-JavaFX application Option to disable proxy setup in the JavaFX launcher Ability to specify codebase for WebStart application Option to update existing jar file Self-Contained Applications: Specify application icon Self-Contained Applications: Pass parameters on the command line All these features and number of other important bug fixes are available in the developer preview builds of JDK 7 update 10 (build 8 or later). Please give them a try and share your feedback! Self-Contained Applications: Select Java Runtime to bundle Packager tools in 7u6 assume current JDK (based on java.home property) is the source for embedded runtime. This is useful simplification for many scenarios but there are cases where ability to specify what to embed explicitly is handy. For example IDE may be using fixed JDK to build the project and this is not the version you want to bundle into your application. To make it more flexible we now allow to specify location of base JDK explicitly. It is optional and if you do not specify it then current JDK will be used (i.e. this change is fully backward compatible). New 'basedir' attribute was added to <fx:platform> tag. Its value is location of JDK to be used. It is ok to point to either JRE inside the JDK or JDK top level folder. However, it must be JDK and not JRE as we need other JDK tools for proper packaging and it must be recent version of JDK that is bundled with JavaFX (i.e. Java 7 update 6 or later). Here are examples (<fx:platform> is part of <fx:deploy> task): <fx:platform basedir="${java.home}"/> <fx:platform basedir="c:\tools\jdk7"/> Hint: this feature enables you to use packaging tools from JDK 7 update 10 (and benefit from bug fixes and other features described below) to create application package with bundled FCS version of JRE 7 update 6. Self-Contained Applications: Create Package without Java Runtime This may sound a bit puzzling at first glance. Package without embedded Java Runtime is not really self-contained and obviously will not help with: Deployment on fresh systems. JRE need to be installed separately (and this step will require admin permissions). Possible compatibility issues due to updates of system runtime. However, these packages are much much smaller in size. If download size matters and you are confident that user have recommended system JRE installed then this may be good option to consider if you want to improve user experience for install and launch. Technically, this is implemented as an extension of previous feature. Pass empty string as value for 'basedir' attribute and this will be treated as request to not bundle Java runtime, e.g. <fx:platform basedir=""/> Self-Contained Applications: Package non-JavaFX application One of popular questions people ask about self-contained applications - can i package my Java application as self-contained application? Absolutely. This is true even for tools shipped with JDK 7 update 6. Simply follow steps for creating package for Swing application with integrated JavaFX content and they will work even if your application does not use JavaFX. What's wrong with it? Well, there are few caveats: bundle size is larger because JavaFX is bundled whilst it is not really needed main application jar needs to be packaged to comply to JavaFX packaging requirements(and this may be not trivial to achieve in your existing build scripts) javafx application launcher may not work well with startup logic of your application (for example launcher will initialize networking stack and this may void custom networking settings in your application code) In JDK 7 update 6 <fx:deploy> was updated to accept arbitrary executable jar as an input. Self-contained application package will be created preserving input jar as-is, i.e. no JavaFX launcher will be embedded. This does not help with first point above but resolves other two. More formally following assertions must be true for packaging to succeed: application can be launched as "java -jar YourApp.jar" from the command line  mainClass attribute of <fx:application> refers to application main class <fx:resources> lists all resources needed for the application To give you an example lets assume we need to create a bundle for application consisting of 3 jars:     dist/javamain.jar     dist/lib/somelib.jar    dist/morelibs/anotherlib.jar where javamain.jar has manifest with      Main-Class: app.Main     Class-Path: lib/somelib.jar morelibs/anotherlib.jar Here is sample ant code to package it: <target name="package-bundle"> <taskdef resource="com/sun/javafx/tools/ant/antlib.xml" uri="javafx:com.sun.javafx.tools.ant" classpath="${javafx.tools.ant.jar}"/> <fx:deploy nativeBundles="all" width="100" height="100" outdir="native-packages/" outfile="MyJavaApp"> <info title="Sample project" vendor="Me" description="Test built from Java executable jar"/> <fx:application id="myapp" version="1.0" mainClass="app.Main" name="MyJavaApp"/> <fx:resources> <fx:fileset dir="dist"> <include name="javamain.jar"/> <include name="lib/somelib.jar"/> <include name="morelibs/anotherlib.jar"/> </fx:fileset> </fx:resources> </fx:deploy> </target> Option to disable proxy setup in the JavaFX launcher Since JavaFX 2.2 (part of JDK 7u6) properly packaged JavaFX applications  have proxy settings initialized according to Java Runtime configuration settings. This is handy for most of the application accessing network with one exception. If your application explicitly sets networking properties (e.g. socksProxyHost) then they must be set before networking stack is initialized. Proxy detection will initialize networking stack and therefore your custom settings will be ignored. One way to disable proxy setup by the embedded JavaFX launcher is to pass "-Djavafx.autoproxy.disable=true" on the command line. This is good for troubleshooting (proxy detection may cause significant startup time increases if network is misconfigured) but not really user friendly. Now proxy setup will be disabled if manifest of main application jar has "JavaFX-Feature-Proxy" entry with value "None". Here is simple example of adding this entry using <fx:jar> task: <fx:jar destfile="dist/sampleapp.jar"> <fx:application refid="myapp"/> <fx:resources refid="myresources"/> <fileset dir="build/classes"/> <manifest> <attribute name="JavaFX-Feature-Proxy" value="None"/> </manifest> </fx:jar> Ability to specify codebase for WebStart application JavaFX applications do not need to specify codebase (i.e. absolute location where application code will be deployed) for most of real world deployment scenarios. This is convenient as application does not need to be modified when it is moved from development to deployment environment. However, some developers want to ensure copies of their application JNLP file will redirect to master location. This is where codebase is needed. To avoid need to edit JNLP file manually <fx:deploy> task now accepts optional codebase attribute. If attribute is not specified packager will generate same no-codebase files as before. If codebase value is explicitly specified then generated JNLP files (including JNLP content embedded into web page) will use it.  Here is an example: <fx:deploy width="600" height="400" outdir="Samples" codebase="http://localhost/codebaseTest" outfile="TestApp"> .... </fx:deploy> Option to update existing jar file JavaFX packaging procedures are optimized for new application that can use ant or command line javafxpackager utility. This may lead to some redundant steps when you add it to your existing build process. One typical situation is that you might already have a build procedure that produces executable jar file with custom manifest. To properly package it as JavaFX executable jar you would need to unpack it and then use javafxpackager or <fx:jar> to create jar again (and you need to make sure you pass all important details from your custom manifest). We added option to pass jar file as an input to javafxpackager and <fx:jar>. This simplifies integration of JavaFX packaging tools into existing build  process as postprocessing step. By the way, we are looking for ways to simplify this further. Please share your suggestions! On the technical side this works as follows. Both <fx:jar> and javafxpackager will attempt to update existing jar file if this is the only input file. Update process will add JavaFX launcher classes and update the jar manifest with JavaFX attributes. Your custom attributes will be preserved. Update could be performed in place or result may be saved to a different file. Main-Class and Class-Path elements (if present) of manifest of input jar file will be used for JavaFX application  unless they are explicitly overriden in the packaging command you use. E.g. attribute mainClass of <fx:application> (or -appclass in the javafxpackager case) overrides existing Main-Class in the jar manifest. Note that class specified in the Main-Class attribute could either extend JavaFX Application or provide static main() method. Here are examples of updating jar file using javafxpackager: Create new JavaFX executable jar as a copy of given jar file javafxpackager -createjar -srcdir dist -srcfiles fish_proto.jar -outdir dist -outfile fish.jar  Update existing jar file to be JavaFX executable jar and use test.Fish as main application class javafxpackager -createjar -srcdir dist -appclass test.Fish -srcfiles fish.jar -outdir dist -outfile fish.jar  And here is example of using <fx:jar> to create new JavaFX executable jar from the existing fish_proto.jar: <fx:jar destfile="dist/fish.jar"> <fileset dir="dist"> <include name="fish_proto.jar"/> </fileset> </fx:jar> Self-Contained Applications: Specify application icon The only way to specify application icon for self-contained application using tools in JDK 7 update 6 is to use drop-in resources. Now this bug is resolved and you can also specify icon using <fx:icon> tag. Here is an example: <fx:deploy ...> <fx:info> <fx:icon href="default.png"/> </fx:info> ... </fx:deploy> Few things to keep in mind: Only default kind of icon is applicable to self-contained applications (as of now) Icon should follow platform specific rules for sizes and image format (e.g. .ico on Windows and .icns on Mac) Self-Contained Applications: Pass parameters on the command line JavaFX applications support two types of application parameters: named and unnamed (see the API for Application.Parameters). Static named parameters can be added to the application package using <fx:param> and unnamed parameters can be added using <fx:argument>. They are applicable to all execution modes including standalone applications. It is also possible to pass parameters to a JavaFX application from a Web page that hosts it, using <fx:htmlParam>.  Prior to JavaFX 2.2, this was only supported for embedded applications. Starting from JavaFX 2.2, <fx:htmlParam> is applicable to Web Start applications also. See JavaFX deployment guide for more details on this. However, there was no way to pass dynamic parameters to the self-contained application. This has been improved and now native launchers will  delegate parameters from command line to the application code. I.e. to pass parameter to the application you simply need to run it as "myapp.exe somevalue" and then use getParameters().getUnnamed().get(0) to get "somevalue".

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