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  • Perl/SQLite - How do I select / update a row with the prepare method?

    - by somebody
    I have the following code my $db = DBI->connect( "dbi:SQLite:data.db", "", "", { RaiseError => 1, AutoCommit => 1, PrintError => 0 } ); my $row = $db->selectall_arrayref( "SELECT * FROM something WHERE name=\'$hash->{name}\'"); print Dumper $row; How do I do the same with my $sql = $db->prepare("......"); $sql->execute($hash->{name}); so that it's escaped correctly and I have the selected data in $row?

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  • How can I pass an array resulting from a Perl method by reference?

    - by arareko
    Some XML::LibXML methods return arrays instead of references to arrays. Instead of doing this: $self->process_items($xml->findnodes('items/item')); I want to do something like: $self->process_items(\$xml->findnodes('items/item')); So that in process_items() I can dereference the original array instead of creating a copy: sub process_items { my ($self, $items) = @_; foreach my $item (@$items) { # do something... } } I can always store the results of findnodes() into an array and then pass the array reference to my own method, but let's say I want to try a reduced version of my code. Is that the correct syntax for passing the method results or should I use something different? Thanks! EDIT: Now suppose I want to change process_items() to process_item() so I can do stuff on a single element of the referenced array inside a loop. Something like: $self->process_item($_) for ([ $xml->findnodes('items/item') ]); This doesn't work as process_item() is executed only once because a single value is passed to the for loop (the reference to the array from findnodes()). What's the proper way of using $_ in this case?

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  • How to optimize perl code for directory exists or not ?

    - by SCNCN2010
    sub DirectoryExists { my $param = shift; # Remove first element of the array shift @{$param}; # Loop through each directory to see if it exists foreach my $directory (@{$param}) { unless (-e $directory && -d $directory) { return 0; } } # True return 1; } is there any way to optimize this code ? is there any good way to optimize this code

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  • How can I read and parse chunks of data into a Perl hash of arrays?

    - by neversaint
    I have data that looks like this: #info #info2 1:SRX004541 Submitter: UT-MGS, UT-MGS Study: Glossina morsitans transcript sequencing project(SRP000741) Sample: Glossina morsitans(SRS002835) Instrument: Illumina Genome Analyzer Total: 1 run, 8.3M spots, 299.9M bases Run #1: SRR016086, 8330172 spots, 299886192 bases 2:SRX004540 Submitter: UT-MGS Study: Anopheles stephensi transcript sequencing project(SRP000747) Sample: Anopheles stephensi(SRS002864) Instrument: Solexa 1G Genome Analyzer Total: 1 run, 8.4M spots, 401M bases Run #1: SRR017875, 8354743 spots, 401027664 bases 3:SRX002521 Submitter: UT-MGS Study: Massive transcriptional start site mapping of human cells under hypoxic conditions.(SRP000403) Sample: Human DLD-1 tissue culture cell line(SRS001843) Instrument: Solexa 1G Genome Analyzer Total: 6 runs, 27.1M spots, 977M bases Run #1: SRR013356, 4801519 spots, 172854684 bases Run #2: SRR013357, 3603355 spots, 129720780 bases Run #3: SRR013358, 3459692 spots, 124548912 bases Run #4: SRR013360, 5219342 spots, 187896312 bases Run #5: SRR013361, 5140152 spots, 185045472 bases Run #6: SRR013370, 4916054 spots, 176977944 bases What I want to do is to create a hash of array with first line of each chunk as keys and SR## part of lines with "^Run" as its array member: $VAR = { 'SRX004541' => ['SRR016086'], # etc } But why my construct doesn't work. And it must be a better way to do it. use Data::Dumper; my %bighash; my $head = ""; my @temp = (); while ( <> ) { chomp; next if (/^\#/); if ( /^\d{1,2}:(\w+)/ ) { print "$1\n"; $head = $1; } elsif (/^Run \#\d+: (\w+),.*/){ print "\t$1\n"; push @temp, $1; } elsif (/^$/) { push @{$bighash{$head}}, [@temp]; @temp =(); } } print Dumper \%bighash ;

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  • Forcing a mixed ISO-8859-1 and UTF-8 multi-line string into UTF-8 in Perl

    - by knorv
    Consider the following problem: A multi-line string $junk contains some lines which are encoded in UTF-8 and some in ISO-8859-1. I don't know a priori which lines are in which encoding, so heuristics will be needed. I want to turn $junk into pure UTF-8 with proper re-encoding of the ISO-8859-1 lines. Also, in the event of errors in the processing I want to provide a "best effort result" rather than throwing an error. My current attempt looks like this: $junk = &force_utf8($junk); sub force_utf8 { my $input = shift; my $output = ''; foreach my $line (split(/\n/, $input)) { if (utf8::valid($line)) { utf8::decode($line); } $output .= "$line\n"; } return $output; } While this appears to work I'm certain this is not the optimal solution. How would you improve the force_utf8(...) sub?

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  • Should Perl's opendir always return . and .. first?

    - by ojblass
    opendir MYDIR, "$dir"; my @FILES = readdir MYDIR; closedir MYDIR; It appears that 99.9 % of the time the first two entries in the array are always “.” and “..”. Later logic in the script has issues if it is not true. I ran into a case where the directory entries appeared later. Is this indicative of the file system being corrupt or something else? Is there a known order to what opendir returns?

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  • Perl : How to print all cp1252 characters on by one ?

    - by Vinay
    Hi,i am not able to write a script to print all the latin -1 characters one by one.Can anybody help me in solving the problem? I am using the below code but it is not giving me expected result. foreach $char(0..255) { $hexval = sprintf("%x",$char); $charval = sprintf("%c",%hexval); print "$charval"; } output should be like :- 0065 - e 0066 - f ... ... 007F - character at the step For all the codepoints after 007F,it is not giving me expected results. Please help me out with this

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  • How can I strip invalid XML characters from strings in Perl?

    - by AndrewR
    I'm looking for what the standard, approved, and robust way of stripping invalid characters from strings before writing them to an XML file. I'm talking here about blocks of text containing backspace (^H) and formfeed characters etc. There has to be a standard library/module function for doing this but I can't find it. I'm using XML::LibXML to build a DOM tree that I then serialize to disk.

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  • Recommand a Perl module to persist a large object for re-use between runs?

    - by Alnitak
    I've got a large XML file, which takes 40+ seconds to parse with XML::Simple. I'd like to be able to cache the resulting parsed object so that on the next run I can just retrieve the parsed object and not reparse the whole file. I've looked at using Data::Dumper but the documentation is a bit lacking on how to store and retrieve its output from disk files. Other classes I've looked at (e.g. Cache::Cache) appear designed for storage of many small objects, not a single large one. Can anyone recommend a module designed for this?

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  • How can I insert a line at the beginning of a file with Perl's Tie::File?

    - by thebourneid
    I'm trying to insert/add a line 'COMMENT DUMMY' at the beginnig of a file as a first row if /PATTERN/ not found. I know how to do this with OPEN CLOSE function. Probably after reading the file it should look something like this: open F, ">", $fn or die "could not open file: $!"; ; print F "COMMENT DUMMY\n", @array; close F; But I have a need to implement this with the use of the Tie::File function and don't know how. use strict; use warnings; use Tie::File; my $fn = 'test.txt'; tie my @lines, 'Tie::File', $fn or die "could not tie file: $!"; untie @lines;

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  • What's the best practice in case something goes wrong in Perl code?

    - by Geo
    I saw code which works like this: do_something($param) || warn "something went wrong\n"; and I also saw code like this: eval { do_something_else($param); }; if($@) { warn "something went wrong\n"; } Should I use eval/die in all my subroutines? Should I write all my code based on stuff returned from subroutines? Isn't eval'ing the code ( over and over ) gonna slow me down?

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  • How can I check if a value is in a list in Perl?

    - by ablimit
    I have a file in which every line is an integer which represents an id. What I want to do is just check whether some specific ids are in this list. But the code didn't work. It never tells me it exists even if 123 is a line in that file. I don't know why? Help appreciated. open (FILE, "list.txt") or die ("unable to open !"); my @data=<FILE>; my %lookup =map {chop($_) => undef} @data; my $element= '123'; if (exists $lookup{$element}) { print "Exists"; } Thanks in advance.

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  • How can I call a Perl package I define in the same file?

    - by Robert S. Barnes
    I need to define some modules and use them all in the same file. No, I can't change the requirement. I would like to do something like the following: { package FooObj; sub new { ... } sub add_data { ... } } { package BarObj; use FooObj; sub new { ... # BarObj "has a" FooObj my $self = ( myFoo => FooObj->new() ); ... } sub some_method { ... } } my $bar = BarObj->new(); However, this results in the message: Can't locate FooObj.pm in @INC ... BEGIN failed... How do I get this to work?

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  • How can I write output to a new external file with Perl?

    - by Structure
    Maybe I am searching with the wrong keywords or this is a very basic question but I cannot find the answer to my question. I am having trouble writing the result of my whois command to a new external file. My code is below. It takes $readfilename, which is a file name which has a list of IPs, and $writefilename, which is the destination file for output. Both are user-specified. For my tests, $readfilename contains three IP addresses on three separate lines so there should be three separate whois results in the user specified output file. if ($readfilename) { open (my $inputfile, "<", $readfilename) || die "\n Cannot open the specified file. Please double check your file name and path.\n\n"; open (my $outputfile, ">", $writefilename) || die "\n Could not create write file.\n\n"; while (<$inputfile>) { my $iplookupresult = `whois $_`; print $outputfile $iplookupresult; } close $outputfile; close $inputfile; } I can execute this script and end up with a new external file, but over half of the file has binary garbage data (running on CentOS) and only one (or a portion of one) of the whois lookups is readable. I have no idea how half of my file is ending up binary... but my approach must be incorrect. Is there a better way to achieve the same result?

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  • How to perform dynamic formatting with perl during write?

    - by Bee
    I have a format which is defined like below: format STDOUT = ------------------------------------ |Field1 | Field2 | Field3 | ------------------------------------ |@<<<<<<<<<<| @<<<<<<<<<<<| @<<<<< |~~ shift(@list1),shift(@list2),shift(@list3) ------------------------------------ . write STDOUT; So the questions are as below: Is it possible to make the list of values printed dynamic? e.g. If list 1 contains 12 elements, and if $flag1 is defined, then print only elements 0..10 instead of all 12. I tried doing this by passing $flag as a parameter to the sub which generates the report. However, the last defined FORMAT seems to always take precedence and the final write when it happens, applies the last format no matter what the condition is. Is it possible to also add/hide fields using the same process. e.g. If $flag2 is defined, then add an additional field Field4 to the list?

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  • In Perl, is there a built in way to compare two arrays for equality?

    - by Bill
    I have two arrays of strings that I would like to compare for equality: my @array1 = ("part1", "part2", "part3", "part4"); my @array2 = ("part1", "PART2", "part3", "part4"); Is there a built-in way to compare arrays like there is for scalars? I tried: if (@array1 == @array2) {...} but it just evaluated each array in scalar context, and so compared the length of each array. I can roll my own function to do it, but it seems like such a low-level operation that there should be a built-in way to do it. Is there? Edit: sadly, I don't have access to 5.10+ or optional components.

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  • Perl date function/module able to understand full unabbreviated months.

    - by s2cuts
    Let's say I read in a string from somewhere that contains a date, and it's date format doesn't abbreviate the month. Is there a module that can handle reading it in, and then outputting it to whichever format I choose? I've taken a quick look through CPAN, and every date module I looked at didn't seem to accommodate an unabbreviated month. Thanks for any help EDIT: As an example, say we have a string like this; "2 February 1988". Now we want to convert it into "1988-02-02" (YYYY-MM-DD).

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  • How can I maintain a sorted hash in Perl?

    - by srk
    @aoh =( { 3 => 15, 4 => 8, 5 => 9, }, { 3 => 11, 4 => 25, 5 => 6, }, { 3 => 5, 4 => 18, 5 => 5, }, { 0 => 16, 1 => 11, 2 => 7, }, { 0 => 21, 1 => 13, 2 => 31, }, { 0 => 11, 1 => 14, 2 => 31, }, ); I want the hashes in each array index sorted in reverse order based on values.. @sorted = sort { ........... please fill this..........} @aoh; expected output @aoh =( { 4 => 8, 5 => 9, 3 => 15, }, { 5 => 6, 3 => 11, 4 => 25, }, { 5 => 5, 3 => 5, 4 => 18, }, { 2 => 7, 1 => 11, 0 => 16, }, { 1 => 13, 0 => 21, 2 => 31, }, { 0 => 11, 1 => 14, 2 => 31, }, ); Please help.. Thanks in advance.. Stating my request again: I only want the hashes in each array index to be sorted by values.. i dont want the array to be sorted..

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