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• Comparison of the multiprocessing module and pyro?

  - by fivebells

  I use pyro for basic management of parallel jobs on a compute cluster. I just moved to a cluster where I will be responsible for using all the cores on each compute node. (On previous clusters, each core has been a separate node.) The python multiprocessing module seems like a good fit for this. I notice it can also be used for remote-process communication. If anyone has used both frameworks for remote-process communication, I'd be grateful to hear how they stack up against each other. The obvious benefit of the multiprocessing module is that it's built-in from 2.6. Apart from that, it's hard for me to tell which is better.

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• RequestDispatcher forward between Tomcat instances

  - by MontyBongo

  I have a scenario where I have single entry point Servlet and further Servlets that requests are forwarded to that undertake heavy processing. I am looking at options to distribute this load and I would like to know if it is possible using Tomcat or another platform to forward requests between Servlets sitting on different servers using a cluster type configuration or similar. I have found some documentation on clustering Servlets and Tomcat but none indicate if Servlet request forwarding is possible from what I can see. http://java.sun.com/blueprints/guidelines/designing_enterprise_applications_2e/web-tier/web-tier5.html http://tomcat.apache.org/tomcat-5.5-doc/cluster-howto.html

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• Python k-means algorithm

  - by Eeyore

  I am looking for Python implementation of k-means algorithm with examples to cluster and cache my database of coordinates.

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• OpenCV's cvKMeans2 - chosing clusters

  - by Goffrey

  Hi, I'm using cvKMeans2 for clustering, but I'm not sure, how it works in general - the part of choosing clusters. I thought that it set the first positions of clusters from given samples. So it means that in the end of clustering process would every cluster has at least one sample - in the output array of cluster labels will be full range of numbers (for 100 clusters - numbers 0 to 99). But as I checked output labels, I realised that some labels weren't used at all and only some were used. So, does anyone know, how it works? Or how should I use the parameters of cvKMeans2 to do what I want (cause I'm not sure if I use them right)? I'm using cvKMeans2 function also with optional parameters: cvKMeans2(descriptorMat, N_CLUSTERS, clusterLabels, cvTermCriteria( CV_TERMCRIT_EPS+CV_TERMCRIT_ITER, 10, 1.0), 1, 0, 0, clusterCenters, 0) Thanks for any advices!

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• ASP.NET MVC Validation of ViewState MAC failed

  - by Kevin Pang

  After publishing a new build of my ASP.NET MVC web application, I often see this exception thrown when browsing to the site: System.Web.Mvc.HttpAntiForgeryException: A required anti-forgery token was not supplied or was invalid. --- System.Web.HttpException: Validation of viewstate MAC failed. If this application is hosted by a Web Farm or cluster, ensure that configuration specifies the same validationKey and validation algorithm. AutoGenerate cannot be used in a cluster. --- System.Web.UI.ViewStateException: Invalid viewstate. This exception will continue to occur on each page I visit in my web application until I close out of Firefox. After reopening Firefox, the site works perfectly. Any idea what's going on? Additional notes: I am not using any ASP.NET web controls (there are no instances of runat="server" in my application) If I take out the <%= Html.AntiForgeryToken % from my pages, this problem seems to go away

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• geographical deployment Vs geo load balancing SharePoint 2010

  - by vrajaraman

  we have a company wide SharePoint portals planned for few thousand users. since the users are distributed among different countries and their applications (hosted in sharepoint) We would like to consider geo deployment Vs geo load balancing. Please share your inputs. We are aware of this, Geo SharePoint Cluster facilitates - Farms at Central and other sites , db into regional. 2 db cluster - syncing using logshipping or SAN sync or SQL 2008 features like database mirroing Vs Loading balancing using URL and some 3rd party. all farm,sites,db centralised. benefits expecting. 1 High availability. 2.diaster recovering management. 3.maintenance hope i miss some of the points to be covered

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• Clustering [assessment] algorithm with distance matrix as an input

  - by Max

  Can anyone suggest some clustering algorithm which can work with distance matrix as an input? Or the algorithm which can assess the "goodness" of the clustering also based on the distance matrix? At this moment I'm using a modification of Kruskal's algorithm (http://en.wikipedia.org/wiki/Kruskal%27s_algorithm) to split data into two clusters. It has a problem though. When the data has no distinct clusters the algorithm will still create two clusters with one cluster containing one element and the other containing all the rest. In this case I would rather have one cluster containing all the elements and another one which is empty. Are there any algorithms which are capable of doing this type of clustering? Are there any algorithms which can estimate how well the clustering was done or even better how many clusters are there in the data? The algorithms should work only with distance(similarity) matrices as an input.

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• C# - Data Clustering approach

  - by Brett

  Hi all, I am writing a program in C# in which I have a set of 200 points displayed on an image. However, the points tend to cluster in various regions, and I am looking to find a way to "cluster." In other words, maybe draw a circle/ellipse around the clustered points. Has anyone seen any way to do this? I have heard about K-means clustering, but I am not sure how to implement it in C#. Any favorite implementations out there? Cheers, Brett

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• Tips on deploying Ror

  - by notnoop

  How can I go about deploying a Rails app on a cluster of Amazon EC2 servers? Any recommended guides? I maintain a RoR app (currently hosted on Heroku) that uses a DB and DelayedJobs). The app has a large footprint, and needs to be distributed on a cluster most likely. Any tips would be appreciated. Are there Amazon AMIs that replicate some of Heroku's features (especially DJ)? P.S. I'm quite a Ruby newbie.

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• AJAX with Web services and ASP.NET SessionState

  - by needhelp1

  We have an application which uses ScriptManager to generate a client-side proxy which makes AJAX calls to web services. The web services being invoked live in a separate appDomain(separate cluster altogether). The problem is that our application uses a State server for storing session. I want the web services to be able to access session also. First off, does anyone see anything wrong with the client making web service calls to a separate cluster(we're hoping this would be a better approach for scalability)? I was thinking that possibly anytime there is an update to the session dictionary in one appDomain, automatically update the session in the other appDomain also(referring to the web service appDomain, don't know how to do this, only theoretical). What do others think? Thanks!

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• complex mysql query problem

  - by Scarface

  Hey guys I have a query that selects data and organizes but not in the correct order. What I want to do is select all the comments for a user in that week and sort it by each topic, then sort the cluster by the latest timestamp of each comment in their respective cluster. My current query selects the right data, but in seemingly random order. Does anyone have any ideas? select * from ( SELECT topic.topic_title, topic.topic_id FROM comments JOIN topic ON topic.topic_id=comments.topic_id WHERE comments.user='$user' AND comments.timestamp>$week order by comments.timestamp desc) derived_table group by topic_id

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• Segmenting a double array of labels

  - by Ami

  The Problem: I have a large double array populated with various labels. Each element (cell) in the double array contains a set of labels and some elements in the double array may be empty. I need an algorithm to cluster elements in the double array into discrete segments. A segment is defined as a set of pixels that are adjacent within the double array and one label that all those pixels in the segment have in common. (Diagonal adjacency doesn't count and I'm not clustering empty cells). |-------|-------|------| | Jane | Joe | | | Jack | Jane | | |-------|-------|------| | Jane | Jane | | | | Joe | | |-------|-------|------| | | Jack | Jane | | | Joe | | |-------|-------|------| In the above arrangement of labels distributed over nine elements, the largest cluster is the “Jane” cluster occupying the four upper left cells. What I've Considered: I've considered iterating through every label of every cell in the double array and testing to see if the cell-label combination under inspection can be associated with a preexisting segment. If the element under inspection cannot be associated with a preexisting segment it becomes the first member of a new segment. If the label/cell combination can be associated with a preexisting segment it associates. Of course, to make this method reasonable I'd have to implement an elaborate hashing system. I'd have to keep track of all the cell-label combinations that stand adjacent to preexisting segments and are in the path of the incrementing indices that are iterating through the double array. This hash method would avoid having to iterate through every pixel in every preexisting segment to find an adjacency. Why I Don't Like it: As is, the above algorithm doesn't take into consideration the case where an element in the double array can be associated with two unique segments, one in the horizontal direction and one in the vertical direction. To handle these cases properly, I would need to implement a test for this specific case and then implement a method that will both associate the element under inspection with a segment and then concatenate the two adjacent identical segments. On the whole, this method and the intricate hashing system that it would require feels very inelegant. Additionally, I really only care about finding the large segments in the double array and I'm much more concerned with the speed of this algorithm than with the accuracy of the segmentation, so I'm looking for a better way. I assume there is some stochastic method for doing this that I haven't thought of. Any suggestions?

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• Why do mainframe greybeards refer to DB2/zOS as "he"? [closed]

  - by Alex Nauda

  If you ask a DB2/zOS engine DBA a question about DB2's behavior, the DBA will refer to the DB2 engine as "he" much the way a sailor uses "she" to refer to his ship. For example: "Once you fill the freespace, DB2 still wants to keep those rows in cluster order in the tablespace. That's why he'll split that page in half, and you end up with lots of half-empty pages. That is, unless the cluster key of the row you've just inserted is the highest in the table, in which case he makes a new empty page, and he puts just your new row into that page. So I wouldn't have to do this REORG if you would just sort your input like I suggested." Does anyone know where this tradition comes from?

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• Clustering SQL Server

  - by user265536

  Can we combine multiple installations of Microsoft SQL Server 2005 or 2008 to act as a single database cluster?

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• Distributed, persistent cache using EHCache

  - by Richard

  I currently have a distributed cache using EHCache via RMI that works just fine. I was wondering if you can include persistence with the caches to create a distributed, persistent cache. Alongside this, if the cache was persistent, would it load from the file store, then bootstrap from the cache cluster? Basically, what I want is: Cache starts Cache loads persistent objects from the file store Cache joins the distruted cluster and bootstraps as normal The usecase behind this is having 2 identical components running on independent machines, distributing the cache to avoid losing data in the event that one of the components fails. The persistence would guard against losing all data on the rare occasion that both components fail. Would moving to another distribution method (such as Terracotta) support this?

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• Emacs/xterm color annoyance on Linux

  - by tgamblin

  I'm using emacs in a console window both on my local Linux box and on the login node of a remote cluster. I use emacs regularly, and I've got the foreground color set to white in my .emacs file like so: (set-foreground-color "white") (set-background-color "black") However, when I run emacs, the foreground isn't white; it's grey and very hard to read. On my Mac, emacs in a console window with the same settings shows up as proper white. But on both linux boxes, in konsole and xterm, it's grey. In case it matters, I've got TERM set to xterm-color, the desktop is running RHEL 5, and the cluster node is running RHEL 4 (CentOS). Is this some default with how Linux sets up terminal colors? How do I get white to be white? Note: this is with console emacs, not emacs under X. That's emacs -nw if you have DISPLAY set.

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• Optimal Sharing of heavy computation job using Snow and/or multicore

  - by James

  Hi, I have the following problem. First my environment, I have two 24-CPU servers to work with and one big job (resampling a large dataset) to share among them. I've setup multicore and (a socket) Snow cluster on each. As a high-level interface I'm using foreach. What is the optimal sharing of the job? Should I setup a Snow cluster using CPUs from both machines and split the job that way (i.e. use doSNOW for the foreach loop). Or should I use the two servers separately and use multicore on each server (i.e. split the job in two chunks, run them on each server and then stich it back together). Basically what is an easy way to: 1. Keep communication between servers down (since this is probably the slowest bit). 2. Ensure that the random numbers generated in the servers are not highly correlated.

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• Weblogic Apache plugin and session stickiness

  - by h4tech

  If two webserver are configured in between a load balancer and weblogic cluster, will the two Apache server maintain session stickiness.?? Say for e.g. the load balancer forwards the first request to the 1st apache and inturn 1st apache forwards to 1st WL managed instance.Even if the second req from the same user is forwarded by the load balancer to the second apache, will the sec apache be able to forward it to the 1st WLManaged instance which served the first request rather than the sec WLManaged instance which is not aware of the session information at all.What should ideally be the behaviour of weblogic apache plugin??.Catch is i dont want ot enable the session replication @ the wl server cluster..Pls help.

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• Avoid the use of loops (for) with R

  - by albergali

  Hi, I'm working with R and I have a code like this: i<-1 j<-1 for (i in 1:10) for (j in 1:100) if (data[i] == paths[j,1]) cluster[i,4] <- paths[j,2] where : data is a vector with 100 rows and 1 column paths is a matrix with 100 rows and 5 columns cluster is a matrix with 100 rows and 5 columns My question is: how could I avoid the use of "for" loops to iterate through the matrix? I don't know whether apply functions (lapply, tapply...) are useful in this case. This is a problem when j=10000 for example, because execution time is very long. Thank you

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• Embarrassingly parallel workflow creates too many output files

  - by Hooked

  On a Linux cluster I run many (N > 10^6) independent computations. Each computation takes only a few minutes and the output is a handful of lines. When N was small I was able to store each result in a separate file to be parsed later. With large N however, I find that I am wasting storage space (for the file creation) and simple commands like ls require extra care due to internal limits of bash: -bash: /bin/ls: Argument list too long. Each computation is required to run through a qsub scheduling algorithm so I am unable to create a master program which simply aggregates the output data to a single file. The simple solution of appending to a single fails when two programs finish at the same time and interleave their output. I have no admin access to the cluster, so installing a system-wide database is not an option. How can I collate the output data from embarrassingly parallel computation before it gets unmanageable?

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• R: How to get a stack trace from the snow package

  - by Keith

  How can I get a stack trace back from a snow node after an error occurs? I am using the snow package (version 0.3-3) on R 2.10.1 and I'm getting errors when I use parSapply that do not occur when I use sapply. Snow is nice enough to give me the error message but it would be much more useful for me to have the kind of stack trace you can get from traceback(). So far I have tried: options(showWarnCalls = T, showErrorCalls = T) setDefaultClusterOptions(outfile = "/dev/tty") and options(error=traceback) setDefaultClusterOptions(outfile = "/dev/tty") without luck. I'm currently just testing with a local cluster ie: makeSOCKcluster(c("localhost","localhost")) but I will eventually be using an MPI cluster. Thanks.

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• Python - from file to data structure?

  - by Seafoid

  Hi, I have large file comprising ~100,000 lines. Each line corresponds to a cluster and each entry within each line is a reference i.d. for another file (protein structure in this case), e.g. 1hgn 1dju 3nmj 8kfn 9opu 7gfb 4bui I need to read in the file as a list of lists where each line is a sublist, thus preserving the integrity of the cluster, e.g. nested_list = [['1hgn', '1dju', '3nmj', '8kfn'], ['9opu', '7gfb'], ['4bui']] My current code creates a nested list but the entries within each list are a single string and not comma separated. Therefore, I cannot splice the list with indices so easily. Any help greatly appreciated. Thanks, S :-)

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• Ordering by multiple columns in mysql with subquery

  - by Scarface

  Hey guys I have a query that selects data and organizes but not in the correct order. What I want to do is select all the comments for a user in that week and sort it by each topic, then sort the cluster by the latest timestamp of each comment in their respective cluster. My current query selects the right data, but in seemingly random order. Does anyone have any ideas? select * from ( SELECT topic.topic_title, topic.topic_id FROM comments JOIN topic ON topic.topic_id=comments.topic_id WHERE comments.user='$user' AND comments.timestamp>$week order by comments.timestamp desc) derived_table group by topic_id

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• Enumerating combinations in a distributed manner

  - by Reyzooti

  I have a problem where I must analyse 500C5 combinations (255244687600) of something. Distributing it over a 10 node cluster where each cluster processes roughly 10^6 combinations per second means the job will be complete in about 7hours. The problem I have is distributing the 255244687600 combinations over the 10 nodes. I'd like to present each node with 25524468760, however the algorithms I'm using can only produce the combinations sequentially, I'd like to be able to pass the set of elements and a range of combination indicies eg: [0-10^7) or [10^7,2.0 10^7) etc and have the nodes themselves figure out the combinations. The algorithms I'm using at the moment are from the following: http://home.roadrunner.com/~hinnant/combinations.html A logical question I've considered using a master node, that enumerates each of the combinations and sends work to each of the nodes, however the overhead incurred in iterating the combinations from a single node and communicating back and forth work is enormous, and will subsequently lead to the master node becoming the bottleneck. Are there any good combination iterating algorithms geared up for efficient/optimal distributed enumeration?

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• aspx page gives viewstate error

  - by Priya10

  Hi, I have a simple aspx page with one grid view. When deployed on server, and accessed through that machine, it works fine. However, when connected through load balancer, we get this error ( when click on any button). The page however refreshes when pressed F5. Validation of viewstate MAC failed. If this application is hosted by a Web Farm or cluster, ensure that <machineKey> configuration specifies the same validationKey and validation algorithm. AutoGenerate cannot be used in a cluster. Any idea what is happening here???

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