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  • Convert Chunk of Data into Tabular Format Using Perl

    - by neversaint
    I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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  • Sencha Touch Nestedlist JSON format Example

    - by Ankit Shah
    Hello Friends, I'm new to sencha. Using Sencha touch. I would like to make nested listing like first of list comes, when click on one of the link it goes to another listing, when click on second list's any link it opens image like that. http://dev.sencha.com/deploy/touch/examples/nestedlist/ Above example is perfectly suitable for this one more than that below application. http://touchstyle.mobi/app/ When i'm doing any modification in http://dev.sencha.com/deploy/touch/examples/nestedlist/ it gives no error or warning i'm using Fedora 11 linux Google Chrome. Can anybody tell me what is the JSON perfect format for this nested listing. I will do it for dynamic. So if anyone help to get static nested list it would be better.

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  • Occasional Date or timezone discrepancy in hudson or maven with jodatime

    - by TheStijn
    hi, I hope following explanation will make sense because it's a weird problem we're facing and hard to describe. We have a maven project which gets build in hudson and that contains some unit tests where dates are used and asserted. The hudson server runs on solaris. Now, occasionally (like 30% of the times) the unit tests using dates fail because 3,5 hours are deducted from the specified time in the unit test and hence asserts start failing. The other 70% everything works fine although nothing at all changed in the code and we run the hudson job several times an hour. I add following code to a unittest to check the time: @Test public void testDate() { System.out.println("new DateMidnight(2011, 1, 5).toDate();"); System.out.println(new DateMidnight(2011, 1, 5).toDate()); System.out.println(new DateMidnight(2011, 1, 5).toDate().getTime()); Calendar cal = Calendar.getInstance(); cal.set(Calendar.YEAR, 2011); cal.set(Calendar.MONTH, 0); cal.set(Calendar.DAY_OF_MONTH, 5); cal.set(Calendar.HOUR, 0); cal.set(Calendar.MINUTE, 0); cal.set(Calendar.SECOND, 0); cal.set(Calendar.MILLISECOND, 0); System.out.println("cal.getTime();"); System.out.println(cal.getTime()); System.out.println(cal.getTime().getTime()); } So basically it should print the same thing when using jodatime or plain old Calendar. This is the case in 70% of the runs; for the other 30% I get following printouts: Running TestSuite new DateMidnight(2011, 1, 5).toDate(); Tue Jan 04 21:30:00 MET 2011 1294173000000 cal.getTime(); Wed Jan 05 12:00:00 MET 2011 1294225200000 Local maven tests never appear the pose this problem and we can't figure out what could be the cause of it. Especially, we can't think of a single reason why the tests sometimes pass and sometimes fail without changing any code nor hudson or server setting. Also, we run the maven install with cobertura which means that the unit tests are run twice. It happens also that they pass the first time and fail the second time or the other way around or that they fail both times. Thanks for any help, Stijn

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  • What image format is fastest for BlackBerry?

    - by Ed Marty
    I'm trying to load some images using Bitmap.getBitmapResource(), but it takes about 2 or 3 seconds per image to load. I'm testing on the Storm, specifically. The odd thing is, when I install OS 5.0, the loading goes in a snap, no delay at all. Should I be looking at the format used? Or where the files are stored? I've tried both 24- and 8-bit PNGs, with transparency. The files are stored in a subdirectory in the COD, so getBitmapResource is passed a path, like "images/img1.png" instead of just "img1.png". Is any of this making things slower?

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  • Reliable strtotime() result for different languages

    - by Maksee
    There was always a strange bug in Joomla when adding new article with back-end displayed with a language other than English (for me it's Russian). The field "Finish Publishing" started to be current date instead of "Never" equivalent in Russian. For a site in php4 finally found that strtotime function returns different results for arbitrary words. For "Never" it always -1 and joomla relies on this result in the JDate implementation. But in other case it sometimes returns a valid date. For russian translation of Never (???????) it is the case, but also for single "N" it is the case, so if one decided to change the string to some other he or she would face the same issue. So the code below <?php echo "Res:".strtotime("N")."<br>"; echo "Res:".strtotime("Nev")."<br>"; echo "Res:".strtotime("Neve")."<br>"; echo "Res:".strtotime("Never")."<br>"; ?> Outputs: Res:1271120400 Res:-1 Res:-1 Res:-1 So what are the solutions would be in this case? I would like not to write language-specific date.php handler, but to modify date method of JDate class, but what are language-neutral changes would be in order to detect invalid string. Thank you

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  • Managing Lotus Notes Mail Format using C#

    - by Pari
    Hi, I am accessing mail body and fetching it in another mail. But i am not getting original format of previous mail in new mail. Problem i am facing in this situation are: Not getting images in destination mail. Font is also varying. I am accessing mail body as follows: NotesRichTextItem rtItem = (NotesRichTextItem)docInbox.GetFirstItem("Body"); String Body = rtItem.GetFormattedText(false , 0); String bodyFormat = rtItem.type.ToString(); also tried this code: NotesItem itemBody = docInbox.GetFirstItem("Body"); String bodyFormat = itemBody.type.ToString(); String Body = itemBody.Text; But not getting solution in both case.

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  • Get Time in London

    - by fahdshariff
    How can I get the current local wall clock time (in number of millis since 1 Jan 1970) in London? Since my application can run on a server in any location, I think I need to use a TimeZone of "Europe/London". I also need to take Daylight Savings into account i.e. the application should add an hour during the "summer". I would prefer to use the standard java.util libraries. Is this correct? TimeZone tz = TimeZone.getTimeZone("Europe/London") ; Calendar cal = Calendar.getInstance(tz); return cal.getTime().getTime() + tz.getDSTSavings(); Thanks

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  • Is there a standard site structure format?

    - by artlung
    Is there a standard site structure format? The use of this would be for export and import into a CMS or framework to define the urls, content, metadata for a website. Something tool agnostic would be the goal. JSON, YAML, XML, whatever. Maybe something like: { 'baseurl': 'http://example.com', 'site': [ {'slug': '/', 'title': 'ExampleCo. Inc.'}, {'slug': '/about', 'title': 'About Our Company'}, {'slug': '/services', 'title': 'Our Services'}, {'slug': '/products', 'title': 'Products'}, {'slug': '/products/purchase', 'title': 'Purchase Products Now'}, {'slug': '/products/downloads', 'title': 'Downloads'}, {'slug': '/contact', 'title': 'Contact Us'} ] } My thinking is that it would allow you to quickly populate a content management system or framework with a generic site navigational structure. Does something like this exist?

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  • Cannot format first column in WxPython's ListCtrl

    - by Matt Clarke
    If I set the format of the first column in a ListCtrl to align centre (or align right) nothing happens. It works for the other columns. This only happens on Windows - I have tested it on Linux and it works fine. Does anyone know if there is a work-round or other solution? Here is an example based on code found at http://zetcode.com/wxpython/ import wx import sys packages = [('jessica alba', 'pomona', '1981'), ('sigourney weaver', 'new york', '1949'), ('angelina jolie', 'los angeles', '1975'), ('natalie portman', 'jerusalem', '1981'), ('rachel weiss', 'london', '1971'), ('scarlett johansson', 'new york', '1984' )] class Actresses(wx.Frame): def __init__(self, parent, id, title): wx.Frame.__init__(self, parent, id, title, size=(380, 230)) hbox = wx.BoxSizer(wx.HORIZONTAL) panel = wx.Panel(self, -1) self.list = wx.ListCtrl(panel, -1, style=wx.LC_REPORT) self.list.InsertColumn(0, 'name', wx.LIST_FORMAT_CENTRE,width=140) self.list.InsertColumn(1, 'place', wx.LIST_FORMAT_CENTRE,width=130) self.list.InsertColumn(2, 'year', wx.LIST_FORMAT_CENTRE, 90) for i in packages: index = self.list.InsertStringItem(sys.maxint, i[0]) self.list.SetStringItem(index, 1, i[1]) self.list.SetStringItem(index, 2, i[2]) hbox.Add(self.list, 1, wx.EXPAND) panel.SetSizer(hbox) self.Centre() self.Show(True) app = wx.App() Actresses(None, -1, 'actresses') app.MainLoop()

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  • Which of these is pythonic? and Pythonic vs. Speed

    - by Kashyap Nadig
    Hi! I'm new to python and just wrote this module level function: def _interval(patt): """ Converts a string pattern of the form '1y 42d 14h56m' to a timedelta object. y - years (365 days), M - months (30 days), w - weeks, d - days, h - hours, m - minutes, s - seconds""" m = _re.findall(r'([+-]?\d*(?:\.\d+)?)([yMwdhms])', patt) args = {'weeks': 0.0, 'days': 0.0, 'hours': 0.0, 'minutes': 0.0, 'seconds': 0.0} for (n,q) in m: if q=='y': args['days'] += float(n)*365 elif q=='M': args['days'] += float(n)*30 elif q=='w': args['weeks'] += float(n) elif q=='d': args['days'] += float(n) elif q=='h': args['hours'] += float(n) elif q=='m': args['minutes'] += float(n) elif q=='s': args['seconds'] += float(n) return _dt.timedelta(**args) My issue is with the for loop here i.e the long if elif block, and was wondering if there is a more pythonic way of doing it. So I re-wrote the function as: def _interval2(patt): m = _re.findall(r'([+-]?\d*(?:\.\d+)?)([yMwdhms])', patt) args = {'weeks': 0.0, 'days': 0.0, 'hours': 0.0, 'minutes': 0.0, 'seconds': 0.0} argsmap = {'y': ('days', lambda x: float(x)*365), 'M': ('days', lambda x: float(x)*30), 'w': ('weeks', lambda x: float(x)), 'd': ('days', lambda x: float(x)), 'h': ('hours', lambda x: float(x)), 'm': ('minutes', lambda x: float(x)), 's': ('seconds', lambda x: float(x))} for (n,q) in m: args[argsmap[q][0]] += argsmap[q][1](n) return _dt.timedelta(**args) I tested the execution times of both the codes using timeit module and found that the second one took about 5-6 seconds longer (for the default number of repeats). So my question is: 1. Which code is considered more pythonic? 2. Is there still a more pythonic was of writing this function? 3. What about the trade-offs between pythonicity and other aspects (like speed in this case) of programming? p.s. I kinda have an OCD for elegant code. EDITED _interval2 after seeing this answer: argsmap = {'y': ('days', 365), 'M': ('days', 30), 'w': ('weeks', 1), 'd': ('days', 1), 'h': ('hours', 1), 'm': ('minutes', 1), 's': ('seconds', 1)} for (n,q) in m: args[argsmap[q][0]] += float(n)*argsmap[q][1]

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  • Double Timezone offset

    - by gAMBOOKa
    I have a timezone name and I want the name of the timezone double its offset. For instance, Asia/Dubai is +4, I want to double that to +8... and have it resolved to Asia/HonkKong Language: PHP Here's a sample of what it would look like: $timezone = "Asia/Dubai" $offset = $timezone->getOffset(); $offset *= 2; $timezone = $offset->getTimeZone(); Output: Asia/HonkKong

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  • Time zone for Force.com API fiscal date literals?

    - by Nick
    I have a question about fiscal date literals in the Force.com API (http://www.salesforce.com/us/developer/docs/api/Content/sforce_api_calls_soql_select_dateformats.htm): For which time zone are date ranges calculated? For example, suppose we execute the query: SELECT Id FROM Opportunity WHERE CloseDate = THIS_FISCAL_QUARTER where, according to our company's fiscal settings, THIS_FISCAL_QUARTER runs from Jan 1 to Mar 31. Does the range for THIS_FISCAL_QUARTER use... the user's time zone? For example, if the user's time zone is GMT-8, THIS_FISCAL_QUARTER = Jan 1 00:00 GMT-8 to Mar 31 23:59 GMT-8 (or Jan 1 08:00 UTC to Mar 31 07:59 UTC) the company's default time zone (according to the company profile)? For example, if the company's default time zone is GMT-8, THIS_FISCAL_QUARTER = Jan 1 00:00 GMT-8 to Mar 31 23:59 GMT-8 (or Jan 1 08:00 UTC to Mar 31 07:59 UTC) UTC? THIS_FISCAL_QUARTER = Jan 1 00:00 UTC to Mar 31 23:59 UTC something else?

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  • Masked Edit Extender Format Issue

    - by Kumar
    I am using an ASP.NET AJAX Masked Edit Extender to format phone numbers <asp:TextBox ID="tbPhoneNumber" runat="server" /> <ajaxToolkit:MaskedEditExtender TargetControlID="tbPhoneNumber" Mask="(999)999-9999" MaskType="Number" InputDirection="LeftToRight" ClearMaskOnLostFocus="false" ClearTextOnInvalid="false" runat="server" AutoComplete="false" /> On the page load event I am trying to populate the phone textbox as follows: protected void Page_Load(object sender, EventArgs e) { tbPhoneNumber.Text = "(394)456-310"; } So there is one number which is missing at the end to make it a valid phone number. When the page loads I expected the value in the textbox to be (394)456-310_ But it displays (_39)445-6310 Why is this happening?

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  • Rows in their own columns depending on their date and simbolized by 'x'

    - by Chandradyani
    Dear All, please help me since I'm newbie in SQL Server. I have a select query that currently produces the following results: DoctorName Team Visit date dr. As A 5 dr. Sc A 4 dr. Gh B 6 dr. Nd C 31 dr As A 7 Using the following query: SELECT d.DoctorName, t.TeamName, ca.VisitDate FROM cActivity AS ca INNER JOIN doctor AS d ON ca.DoctorId = d.Id INNER JOIN team AS t ON ca.TeamId = t.Id WHERE ca.VisitDate BETWEEN '1/1/2010' AND '1/31/2010' I want to produce the following: DoctorName Team 1 2 3 4 5 6 7 ... 31 Visited dr. As A x x ... 2 times dr. Sc A x ... 1 times dr. Gh B x ... 1 times dr. Nd C ... X 1 times

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  • How do you convert date taken from a bash script to milliseconds in a Java program?

    - by Matt Pascoe
    I am writing a piece of code in Java that needs to take a time sent from a bash script and parse the time to milliseconds. When I check the millisecond conversion on the date everything is correct except for the month I have sent which is January instead of March. Here is the variable I create in the bash script, which later in the script I pass to the Java program: TIME=`date +%m%d%Y_%H:%M:%S` Here is the Java code which parses the time to milliseconds: String dt = "${scriptstart}"; java.text.SimpleDateFormat scriptStart = new java.text.SimpleDateFormat("MMDDyyyy_HH:mm:ss"); long start = scriptStart.parse(dt).getTime(); The goal of this statement is to find the elapsed time between the start of the script and the current system time. To troubleshoot this I printed out the two: System Time = 1269898069496 (converted = Mon Mar 29 2010 16:27:49 GMT-0500 (Central Daylight Time)) Script Start = 03292010_16:27:45 Script Start in Milli = 1264804065000 (Converted = Fri Jan 29 2010 16:27:45 GMT-0600 (Central Standard Time))

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  • simpledateformat parsing date with 'Z' literal

    - by DanInDC
    I am trying to parse a date that looks like this: 2010-04-05T17:16:00Z This is a valid date per http://www.ietf.org/rfc/rfc3339.txt. The 'Z' literal "imply that UTC is the preferred reference point for the specified time." If I try to parse it using SimpleDateFormat and this pattern: yyyy-MM-dd'T'HH:mm:ss It will be parsed as a Mon Apr 05 17:16:00 EDT 2010 SimpleDateFormat is unable to parse the string with these patterns: yyyy-MM-dd'T'HH:mm:ssz yyyy-MM-dd'T'HH:mm:ssZ I can explicitly set the TimeZone to use on the SimpleDateFormat to get the expected output, but I don't think that should be necessary. Is there something I am missing? Is there an alternative date parser?

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  • Next month, same day in PHP

    - by Guillermo
    I got a last time (and urgent) requeriment of an "event" that needs to be scheduled the same day of every month. Say of you set the start date on the 1st May you should get the next events on the 1st of Jun, 1 Jul etc. The problem comes with a start date on the 31st (the next ones could be 30 or 28 depending on the month) Considering that there are months with different numbers of days (28,30,31) depending on the month itself and the year... what would ba an easy way to setup this? Consider the following (and flawed) nextmonth function: $events = array() function nextmonth($date) { return $date+(60*60*24*30); } $curr = $start; while($curr < $end) { $events[ = $curr; $curr = nextmonth($curr); } Edited to add: The problem for me is, simply enought, is to solve what the number of days of any given month is and thus get the next corresponding date..

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  • RegEx for a date format

    - by Ivan
    Say I have a string like this: 07-MAY-07 Hello World 07-MAY-07 Hello Again So the pattern is, DD-MMM-YY, where MMM is the three letter format for a month. What Regular Expression will break up this string into: 07-MAY-07 Hello World 07-MAY-07 Hello Again Using Jason's code below modified for C#, string input = @"07-MAY-07 Hello World 07-MAY-07 Hello Again"; string pattern = @"(\d{2}-[A-Z]{3}-\d{2}\s)(\D*|\s)"; string[] results = Regex.Split(input, pattern); results.Dump(); Console.WriteLine("Length = {0}", results.Count()); foreach (string split in results) { Console.WriteLine("'{0}'", split); Console.WriteLine(); } I get embedded blank lines? Length = 7 '' '07-MAY-07 ' 'Hello World ' '' '07-MAY-07 ' 'Hello Again' '' I don't even understand why I am getting the blank lines...?

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  • how to convert byte array to key format??

    - by sebby_zml
    hi everyone, i would like to know how to convert byte array into key. i am doing an AES encryption/decryption. instead of generating a key, i would like to use my generated byte array. byte[] clientCK = Milenage.f3(sharedSecret16, RANDbytes, opc); let say i have a byte array called clientCK, stated above. i want to use it in AES encryption as shown below. Cipher c = Cipher.getInstance("AES"); c.init(Cipher.ENCRYPT_MODE, key); byte[] encValue = c.doFinal(valueToEnc.getBytes()); String encryptedValue = new BASE64Encoder().encode(encValue); therefore, i need to convert that byte array clientCK into key format. please help.

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  • Howto specify format of Restlet-response in browser?

    - by martin
    Hello everybody, i've started to introduce myself into REST. I use as REST-framework Restlet. I have defined a resource with methods for the GET with several response formats like @Get("xml") @Get("json") I now want to test my defined response-formats with my browser, but I don't know which parameter I have to specify in my URL to get the format. Something like: http://localhost:8182/members?type=xml I've tried some param-names, but I couldn't find the right param-name. I know that there must be such a parameter, because I've seen it already in an URL, but i forgot the name and couldn't find it in the net. How is the name of this parameter when using restlet? I would be pleased, if somebody can help me, thanks, Martin

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