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  • T-SQL Tuesday - IO capacity planning

    - by Michael Zilberstein
    This post is my contribution to Adam Machanic's T-SQL Tuesday #004 , hosted this time by Mike Walsh . Being applicative DBA, I usually don't take part in discussions which storage to buy or how to configure it. My interaction with IO is usually via PerfMon. When somebody calls me asking why everything is suddenly so slow on database server, "disk queue length" or "average seconds per transfer" counters provide an overwhelming answer in 60-70% of such cases. Sometimes it can be...(read more)

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  • io Exception error in wordcount example

    - by Anitha
    I have installed Hadoop 1.0.3 in Ubuntu 12.04 version (64bit) based on michael-noll.com/tutorials/running-hadoop-on-ubuntu-linux-single-node-cluster/ . I am trying to run a mapreduce job using the wordcount example. Running the command hduser@ubuntu: $/usr/local/hadoop/bin/hadoop jar hadoop-examples-1.0.3.jar wordcount /user/hduser/gutenberg /user/hduser/gutenberg-output gives the following error: Warning: $HADOOP_HOME is deprecated. Exception in thread "main" java.io.IOException: Error opening job jar: hadoop-examples-1.0.3.jar at org.apache.hadoop.util.RunJar.main(RunJar.java:90) Caused by: java.util.zip.ZipException: error in opening zip file at java.util.zip.ZipFile.open(Native Method) at java.util.zip.ZipFile.<init>(ZipFile.java:131) at java.util.jar.JarFile.<init>(JarFile.java:150) at java.util.jar.JarFile.<init>(JarFile.java:87) at org.apache.hadoop.util.RunJar.main(RunJar.java:88) Thanks in advance.

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  • Python to MATLAB: exporting list of strings using scipy.io

    - by user292461
    I am trying to export a list of text strings from Python to MATLAB using scipy.io. I would like to use scipy.io because my desired .mat file should include both numerical matrices (which I learned to do here) and text cell arrays. I tried: import scipy.io my_list = ['abc', 'def', 'ghi'] scipy.io.savemat('test.mat', mdict={'my_list': my_list) In MATLAB, I load test.mat and get a character array: my_list = adg beh cfi How do I make scipy.io export a list into a MATLAB cell array?

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  • How to diagnose Ubuntu CPU spikes / IO wait?

    - by Jeff Welling
    I'm using Ubuntu and every couple minutes it goes unresponsive for a half second to a full second, which isn't normally a problem but makes trying to code extremely frustrating when your trying to hit backspace or navigate the code and nothing is happening. The problem is, the freezes are so brief that top doesn't have time to show me what is spiking the CPU (assuming something is, but I don't know what else could cause this). Does anyone know how to troubleshoot this performance issue? Edit: I've tried login in with Gnome Classic (No Effects) instead of Unity but it still freezes up every once in awhile. Edit: The CPU graph doesn't seem to be showing any actual spikes so it seems you were right and my original diagnosis of CPU spikes being the problem was incorrect, I now suspect IO wait. I don't recall this happening for the brief few weeks I had Windows 7 Starter running on it though, which leads me to believe it isn't (just?) the hardware.. is there anything I can tweak to improve this? I'm using an Acer Aspire One D257, with Ubuntu 11.10. Edit: Output of dmesg is at http://paste.ubuntu.com/1060054/ and kern.log is at http://paste.ubuntu.com/1060055/

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  • Importing a txt file

    - by Tinkerbell
    How do I get this code to work? When I run the whole program I think it just exits because it never returns true. EDIT So, after moving the file and adding the printStacktrace(), I'm not getting any errors, although my program still won't run. So, I get these errors, what do they mean? java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) java.io.FileNotFoundException: BoggleWords.txt (The system cannot find the file specified) at java.io.FileInputStream.open(Native Method) at java.io.FileInputStream.(Unknown Source) at Boggle.isExceptedWord(Boggle.java:62) at Boggle.wordsThatCount(Boggle.java:49) at Boggle.getWordsFound(Boggle.java:40) at Boggle.getScore(Boggle.java:131) at DiceTrayTest.testGetWordsFoundAfterPrepareResultsCalledWithSetDiceTray(DiceTrayTest.java:101) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) at java.lang.reflect.Method.invoke(Unknown Source) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) at org.junit.runners.BlockJUnit4ClassRunner.runNotIgnored(BlockJUnit4ClassRunner.java:79) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:71) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:49) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:193) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:52) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:191) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:42) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:184) at org.junit.runners.ParentRunner.run(ParentRunner.java:236) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197)

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  • Linux buffer cache effect on IO writes?

    - by Patrick LeBoutillier
    I'm copying large files (3 x 30G) between 2 filesystems on a Linux server (kernel 2.6.37, 16 cores, 32G RAM) and I'm getting poor performance. I suspect that the usage of the buffer cache is killing the I/O performance. To try and narrow down the problem I used fio directly on the SAS disk to monitor the performance. Here is the output of 2 fio runs (the first with direct=1, the second one direct=0): Config: [test] rw=write blocksize=32k size=20G filename=/dev/sda # direct=1 Run 1: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/205M /s] [0/6K iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4667 write: io=20,480MB, bw=199MB/s, iops=6,381, runt=102698msec clat (usec): min=104, max=13,388, avg=152.06, stdev=72.43 bw (KB/s) : min=192448, max=213824, per=100.01%, avg=204232.82, stdev=4084.67 cpu : usr=3.37%, sys=16.55%, ctx=655410, majf=0, minf=29 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 250=99.50%, 500=0.45%, 750=0.01%, 1000=0.01% lat (msec): 2=0.01%, 4=0.02%, 10=0.01%, 20=0.01% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=199MB/s, minb=204MB/s, maxb=204MB/s, mint=102698msec, maxt=102698msec Disk stats (read/write): sda: ios=0/655238, merge=0/0, ticks=0/79552, in_queue=78640, util=76.55% Run 2: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/0K /s] [0/0 iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4733 write: io=20,480MB, bw=91,265KB/s, iops=2,852, runt=229786msec clat (usec): min=16, max=127K, avg=349.53, stdev=4694.98 bw (KB/s) : min=56013, max=1390016, per=101.47%, avg=92607.31, stdev=167453.17 cpu : usr=0.41%, sys=6.93%, ctx=21128, majf=0, minf=33 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 20=5.53%, 50=93.89%, 100=0.02%, 250=0.01%, 500=0.01% lat (msec): 2=0.01%, 4=0.01%, 10=0.01%, 20=0.01%, 50=0.12% lat (msec): 100=0.38%, 250=0.04% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=91,265KB/s, minb=93,455KB/s, maxb=93,455KB/s, mint=229786msec, maxt=229786msec Disk stats (read/write): sda: ios=8/79811, merge=7/7721388, ticks=9/32418456, in_queue=32471983, util=98.98% I'm not knowledgeable enough with fio to interpret the results, but I don't expect the overall performance using the buffer cache to be 50% less than with O_DIRECT. Can someone help me interpret the fio output? Are there any kernel tunings that could fix/minimize the problem? Thanks a lot,

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  • Linux buffer cache effect on IO writes?

    - by Patrick LeBoutillier
    Hi, I'm copying large files (3 x 30G) between 2 filesystems on a Linux server (kernel 2.6.37, 16 cores, 32G RAM) and I'm getting poor performance. I suspect that the usage of the buffer cache is killing the I/O performance. To try and narrow down the problem I used fio directly on the SAS disk to monitor the performance. Here is the output of 2 fio runs (the first with direct=1, the second one direct=0): Config: [test] rw=write blocksize=32k size=20G filename=/dev/sda # direct=1 Run 1: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/205M /s] [0/6K iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4667 write: io=20,480MB, bw=199MB/s, iops=6,381, runt=102698msec clat (usec): min=104, max=13,388, avg=152.06, stdev=72.43 bw (KB/s) : min=192448, max=213824, per=100.01%, avg=204232.82, stdev=4084.67 cpu : usr=3.37%, sys=16.55%, ctx=655410, majf=0, minf=29 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 250=99.50%, 500=0.45%, 750=0.01%, 1000=0.01% lat (msec): 2=0.01%, 4=0.02%, 10=0.01%, 20=0.01% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=199MB/s, minb=204MB/s, maxb=204MB/s, mint=102698msec, maxt=102698msec Disk stats (read/write): sda: ios=0/655238, merge=0/0, ticks=0/79552, in_queue=78640, util=76.55% Run 2: test: (g=0): rw=write, bs=32K-32K/32K-32K, ioengine=sync, iodepth=1 Starting 1 process Jobs: 1 (f=1): [W] [100.0% done] [0K/0K /s] [0/0 iops] [eta 00m:00s] test: (groupid=0, jobs=1): err= 0: pid=4733 write: io=20,480MB, bw=91,265KB/s, iops=2,852, runt=229786msec clat (usec): min=16, max=127K, avg=349.53, stdev=4694.98 bw (KB/s) : min=56013, max=1390016, per=101.47%, avg=92607.31, stdev=167453.17 cpu : usr=0.41%, sys=6.93%, ctx=21128, majf=0, minf=33 IO depths : 1=100.0%, 2=0.0%, 4=0.0%, 8=0.0%, 16=0.0%, 32=0.0%, >=64=0.0% submit : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% complete : 0=0.0%, 4=100.0%, 8=0.0%, 16=0.0%, 32=0.0%, 64=0.0%, >=64=0.0% issued r/w: total=0/655360, short=0/0 lat (usec): 20=5.53%, 50=93.89%, 100=0.02%, 250=0.01%, 500=0.01% lat (msec): 2=0.01%, 4=0.01%, 10=0.01%, 20=0.01%, 50=0.12% lat (msec): 100=0.38%, 250=0.04% Run status group 0 (all jobs): WRITE: io=20,480MB, aggrb=91,265KB/s, minb=93,455KB/s, maxb=93,455KB/s, mint=229786msec, maxt=229786msec Disk stats (read/write): sda: ios=8/79811, merge=7/7721388, ticks=9/32418456, in_queue=32471983, util=98.98% I'm not knowledgeable enough with fio to interpret the results, but I don't expect the overall performance using the buffer cache to be 50% less than with O_DIRECT. Can someone help me interpret the fio output? Are there any kernel tunings that could fix/minimize the problem? Thanks a lot,

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  • MAMP Pro .xip.io, fixing urls with htaccess

    - by user3540018
    I've got all my websites set up with MAMP Pro. For instance, I got it set up, so when I go to example.com, the browser displays the website that's set up on my iMac. Now, I wanna get MAMP Pro to work so I can view my website on my other computers/devices (which are all hooked up on the same network.) So far all I had to do is check the checkbox "via Xip.io (LAN only)", and now I can view my website on my other computers/devices within my LAN by simply going to example.com.10.0.1.13.xip.io. Problem is, whenever I'm on this other computer/device, when I click on the links, I get 404 error. ie. whenever I go to example.com/news, I get the 404. But when I go to example.com.10.0.1.13.xip.io/news, THEN I get the right page. So in order to solve my problem I need to rewrite the urls. So whenever someone clicks on a link ie. goes straight to example.com/news, he'll go to example.com.10.0.1.13.xip.io/news. I don't want to change all the links in my MySQL file, but I believe I can do it simply with the htaccess file. I've opened the htaccess file and added the last two lines, but it just doesn't work. <IfModule mod_rewrite.c> RewriteEngine On # Send would-be 404 requests to Craft RewriteCond %{REQUEST_FILENAME} !-f RewriteCond %{REQUEST_FILENAME} !-d RewriteCond %{REQUEST_URI} !^/(favicon\.ico|apple-touch-icon.*\.png)$ [NC] RewriteRule (.+) index.php?p=$1 [QSA,L] RewriteCond %{HTTP_HOST} ^example\.com RewriteRule ^(.*)$ http://www.example.com.10.0.1.13.xip.io/$1 [R=permanent,L] </IfModule> Or perhaps I don't need to change the htaccess file, is there something that I could be missing in the MAMP Pro settings, or perhaps a MAMP extension that I need?

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  • Determining which database instance makes biggest IO

    - by user2008937
    Assuming that I have a dedicated server on which I am running multiple instances of mysql and postresql servers. How without iotop determine which instance in particular time (proc/pid/io shows data collected in some peroid of time) makes the biggest IO (so it increases IOWAIT)? When lots of ppl do something on DB then I clearly see which instance is making the load because of high cpu usage, but I had a situation when the cpu usage was just normal, but very high iowait made a huge load on server and i had problem finding process that was making some outstanding IO

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  • Creating a Serializable mock with Mockito error

    - by KwintenP
    I'm trying to create a mock object with Mockito that can be serialized. The object is an interface implementation. When this method is called, I receive an object that I want to pass to another object, hence using the doAnswer(...)-method. This is my code. InterfaceClass obj = mock(InterfaceClass.class, withSettings().serializable()); doAnswer(new Answer<Object>() { public Object answer(InvocationOnMock invocation) throws Throwable { Object[] args = invocation.getArguments(); //Here I do something with the arguments } }).when(obj).someMethod( any(someObject.class)); ByteArrayOutputStream bos = new ByteArrayOutputStream(); ObjectOutput out = null; try { out = new ObjectOutputStream(bos); out.writeObject(obj); byte[] yourBytes = bos.toByteArray(); } finally { out.close(); bos.close(); } As far as I can tell this should be correct (I'm fairly new to Mockito). But when Serializing my object I get this error: java.io.NotSerializableException: com.trust1t.ocs.signcore.test.InvalidInputTestCase$1 at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1165) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at java.util.concurrent.ConcurrentLinkedQueue.writeObject(ConcurrentLinkedQueue.java:644) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:950) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1482) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at java.util.LinkedList.writeObject(LinkedList.java:943) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at java.io.ObjectStreamClass.invokeWriteObject(ObjectStreamClass.java:950) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1482) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java:1535) at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java:1496) at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java:1413) at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java:1159) at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java:329) at com.trust1t.ocs.signcore.test.InvalidInputTestCase.certificateValidationTest(InvalidInputTestCase.java:117) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:47) at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) at org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:44) at org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:17) at org.junit.runners.ParentRunner.runLeaf(ParentRunner.java:271) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:70) at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:50) at org.junit.runners.ParentRunner$3.run(ParentRunner.java:238) at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:63) at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:236) at org.junit.runners.ParentRunner.access$000(ParentRunner.java:53) at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:229) at org.junit.runners.ParentRunner.run(ParentRunner.java:309) at org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:50) at org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) at org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:197) The invalidInputTestCase class is the class containing the test where I'm using this code. It looks as if the mock object references this TestCase somewhere (can't find it though). Am I not correctly implementing this or better ideas to mock?

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  • C# Deleting Locked Files & Folders

    - by orangecl4now
    Hello I am writing an application that updates some drivers. However the drivers are "in use" and can't be deleted unless I restart my computer. So how can I write an application to delete these locked drivers without restarting the PC. IF Restarting MUST occur then how can I relaunch my application automatically when the computer restarts and delete those files?

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  • How to remove duplicate line in a file

    - by Abs
    Hi I'm using the below method to write to a file from the Jtextarea and I call this method every 30 second within a Timer but instead to add only new line in file it rewrite the entire lines contained in Jtextarea so then I have duplicate lines. I want to avoid this and update the file just with new lines. Could you help me please. public void loger() { FileWriter writer = null; try { writer = new FileWriter("MBM_Log_"+date()+".txt" , true); textArea.write(writer); } catch (IOException exception) { System.err.println("log error"); exception.printStackTrace(); } finally { if (writer != null) { try { writer.close(); } catch (IOException exception) { System.err.println("Error closing writer"); exception.printStackTrace(); } } } }

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  • Java reading files......

    - by user69514
    Ok this is a homework questions, but I cannot find the answer anywhere, not even in the book. Path to Files If the user wants to specify a path for a file, the typical forward slash is replaced by ________. can you help?

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  • How to do proper Unicode and ANSI output redirection on cmd.exe?

    - by Sorin Sbarnea
    If you are doing automation on windows and you are redirecting the output of different commands (internal cmd.exe or external, you'll discover that your log files contains combined Unicode and ANSI output (meaning that they are invalid and will not load well in viewers/editors). Is it is possible to make cmd.exe work with UTF-8? This question is not about display, s about stdin/stdout/stderr redirection and Unicode. I am looking for a solution that would allow you to: redirect the output of the internal commands to a file using UTF-8 redirect output of external commands supporting Unicode to the files but encoded as UTF-8. If it is impossible to obtain this kind of consistence using batch files, is there another way of solving this problem, like using python scripting for this? In this case, I would like to know if it is possible to do the Unicode detection alone (user using the scripting should not remember if the called tools will output Unicode or not, it will just expect to convert the output to UTF-8. For simplicity we'll assume that if the tool output is not-Unicode it will be considered as UTF-8 (no codepage conversion).

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  • Lucene Error While Reading binary block : java.io.EOFException

    - by tushar Khairnar
    Hi, I am getting java.io.EOFException while reading a binary block from lucene index. I am storing java object as byte-array in lucene index field and reading it when hit occurs. Here is stack trace : Caused by: java.io.EOFException at java.io.ObjectInputStream$PeekInputStream.readFully(ObjectInputStream.java:2281) at java.io.ObjectInputStream$BlockDataInputStream.readShort(ObjectInputStream.java:2750) at java.io.ObjectInputStream.readStreamHeader(ObjectInputStream.java:780) at java.io.ObjectInputStream.(ObjectInputStream.java:280) at org.terracotta.modules.searchable.util.SerializationUtil$OIS.(SerializationUtil.java:20) I have some background threads which write into index. But i buffer them and then write them at once like 1000. Occasionally I also issue optimize() on index. When I write, I am re-opening IndexReader. Does this is happening because of IndexReader re-opening call? Thanks. Regards Tushar

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  • When does ref($variable) return 'IO'?

    - by Zaid
    Here's the relevant excerpt from the documentation of the ref function: The value returned depends on the type of thing the reference is a reference to. Builtin types include: SCALAR ARRAY HASH CODE REF GLOB LVALUE FORMAT IO VSTRING Regexp Based on this, I imagined that calling ref on a filehandle would return 'IO'. Surprisingly, it doesn't: use strict; use warnings; open my $fileHandle, '<', 'aValidFile'; close $fileHandle; print ref $fileHandle; # prints 'GLOB', not 'IO' perlref tries to explain why: It isn't possible to create a true reference to an IO handle (filehandle or dirhandle) using the backslash operator. The most you can get is a reference to a typeglob, which is actually a complete symbol table entry [...] However, you can still use type globs and globrefs as though they were IO handles. In what circumstances would ref return 'IO' then?

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  • How to change I/O priority of a process or thread in Win7?

    - by romkyns
    Process Explorer is able to show the effective IO priority of a given thread, but not change it. Seeing as IO priority support is a comparatively new feature, most programs don't set their own IO priorities. It appears that by default the IO priority is derived from the thread priority (rather than process priority), which Process Explorer can't modify either. Are there any other tools out there that can help me change the IO priority of a given thread / all threads of a given process?

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  • Forcing file redirection on x64 for a 32-bit application

    - by Paul Alexander
    The silent redirection of 64-bit system files to their 32-bit equivalents can be turned off and reverted with Wow64DisableWow64FsRedirection and Wow64RevertWow64FsRedirection. We use this for certain file identity checks in our application. The problem is that in performing some of theses tasks, we might call a framework or Windows API in a DLL that has not yet been loaded. If redirection is enabled at that time, the wrong version of the dll may be loaded resulting in a XXX is not a valid Win32 application error. I've identified the few API calls in question and what I'd like to do force the redirection on for the duration of that call then revert it back - just the opposite of the provided Win32 APIs. Unfortunately these calls do not provide any sort of WOW64 compatibility flag like some of the registry methods do. The obvious alternative is to use Wow64EnableWow64FsRedirection, pass TRUE for Wow64FsEanbledRedirection. However there are a variety of warnings about the use of this method and a note that it is not compatible with Disable/Revert combo methods that have replaced it. Is there a safe way to force redirection on for a give Win32 call? The docs state the redirection is thread specific so I've considered spinning up a new thread for the specific call with appropriate locks and waits, but I was hoping for a simpler solution.

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  • Perl IO modules possibly causing issues in Net::DNS module

    - by Rich
    Hi! I’m porting some software that I wrote for a White Russian OpenWRT system to a new Kamikaze 8.09.1 OpenWRT system but I am having some serious issues that I’m hoping you can help me with. Old system Linux kernel 2.4.34 MIPSEL arch Perl 5.8.7 Net::DNS 0.48 IO 1.21 IO::Socket 1.28 IO::Socket::INET 1.28 New system Linux kernel 2.6.26.8 MIPS arch Perl 5.10.0 Net::DNS 0.66 IO 1.23_01 IO::Socket 1.30_01 IO::Socket::INET 1.31 First, let me provide some background information… I am trying to resolve my server (clearprobe.winbeam.com) from within my Perl program and see the following if I enable debugging in Net::DNS: resolve: Server 'clearprobe-ddns.winbeam.com' ;; query(clearprobe-ddns.winbeam.com) ;; setting up an AF_INET() family type UDP socket ;; send_udp(192.168.88.1:53) ;; send_udp(4.2.2.2:53) ;; send_udp(192.168.88.1:53) ;; send_udp(4.2.2.2:53) resolve: res->errorstring: query timed out Both of these servers resolve clearprobe.winbeam.com fine from the command line: root@cwb-2-11:~# echo “nameserver 192.168.88.1” > /etc/resolv.conf root@cwb-2-11:~# nslookup clearprobe-ddns.winbeam.com Server: 192.168.88.1 Address 1: 192.168.88.1 router Name: clearprobe-ddns.winbeam.com Address 1: 64.13.48.40 64-13-48-40.war.clearwire-dns.net root@cwb-2-11:~# echo “nameserver 4.2.2.2” > /etc/resolv.conf root@cwb-2-11:~# nslookup clearprobe-ddns.winbeam.com Server: 4.2.2.2 Address 1: 4.2.2.2 vnsc-bak.sys.gtei.net Name: clearprobe-ddns.winbeam.com Address 1: 64.13.48.40 64-13-48-40.war.clearwire-dns.net Using Perl’s call to the C gethostbyaddr() function works fine, but I need to do another lookup later in the software which requires that I specify the nameserver (clearprobe-ddns.winbeam.com is the authority for my internal DNS zone), hence my Net::DNS requirement. Now, here is the IO module-specific information: What I am seeing is that the reply is coming back from the nameserver (confirmed via tcpdump – I can send the captures if you’d like), but the UDP packets are sitting in the process’s UDP receive queue pending reception by Net::DNS (the approx 1752 bytes per response stay queued waiting for $sel-can_read()): root@cwb-2-11:~# netstat -una Active Internet connections (servers and established) Proto Recv-Q Send-Q Local Address Foreign Address State udp 1752 0 0.0.0.0:52680 0.0.0.0:* root@cwb-2-11:~# netstat -una Active Internet connections (servers and established) Proto Recv-Q Send-Q Local Address Foreign Address State udp 5256 0 0.0.0.0:52680 0.0.0.0:* If I force $sock[AF_INET]-recv($buf, $self-_packetsz) around line 803 of /usr/lib/perl5/5.10/Net/DNS/Resolver/Base.pm, instead of waiting for IO::Select’s can_read() function ( @ready = $sel-can_read($timeout)) to populate @ready, the response is received and processed. Any idea what could be causing this issue? In a possibly related matter, I noticed in another script that the following code fails in the same manner (network responses stay in the process’s TCP receive queue) with the new system: $sock = new IO::Socket::INET( PeerAddr => "$server", PeerPort => 37, Proto => 'tcp', Timeout => 5 ); Whereas the following code works: $sock = new IO::Socket::INET( PeerAddr => "$server", PeerPort => 37, Proto => 'tcp' ); I have looked through the NET::DNS code and don’t see a timeout passed for the UDP sockets, so I am not sure if that this is related or not. Please let me know if I can provide you with any further information in order to help diagnose this issue. Thanks! -Rich

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  • java.util.ConcurrentModificationException when serializing non thread-safe maps

    - by [email protected]
    We have got some questions related to exceptions thrown during a map serialization like the following one (in this example, for a LRUMap): java.util.ConcurrentModificationExceptionat org.apache.commons.collections.SequencedHashMap$OrderedIterator.next(Unknown Source)at org.apache.commons.collections.LRUMap.writeExternal(Unknown Source)at java.io.ObjectOutputStream.writeExternalData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.defaultWriteFields(ObjectOutputStream.java(Inlined CompiledCode))at java.io.ObjectOutputStream.writeSerialData(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeOrdinaryObject(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject0(ObjectOutputStream.java(Compiled Code))at java.io.ObjectOutputStream.writeObject(ObjectOutputStream.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.writeSerializable(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.util.ExternalizableHelper.writeObjectInternal(ExternalizableHelper.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.serializeInternal(ExternalizableHelper.java(Compiled Code))at com.tangosol.util.ExternalizableHelper.toBinary(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.util.ExternalizableHelper.toBinary(ExternalizableHelper.java(InlinedCompiled Code))at com.tangosol.coherence.servlet.TraditionalHttpSessionModel$OptimizedHolder.serializeValue(TraditionalHttpSessionModel.java(Inlined Compiled Code))at com.tangosol.coherence.servlet.TraditionalHttpSessionModel$OptimizedHolder.getBinary(TraditionalHttpSessionModel.java(Compiled Code)) This is caused because LRUMap is not thread safe, so if another thread is modifying the content of that same map while serialization is in progress, then the ConcurrentModificationException will be thrown. Also, the map must be synchronized. Other structures like java.util.HashMap are not thread safe too. To avoid this kind of problems, it is recommended to use a thread-safe and synchronized map such as java.util.Map, java.util.Hashtable or com.tangosol.util.SafeHashMap. You may also need to use the synchronizedMap(Map) method from Class java.util.Collections.  

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  • High data on recv-q buffer and thread lock on java.io.BufferedInputStream in linux

    - by Sagar Patel
    We have a java application running on linux (ubuntu server). We have been facing high recv-q problem since quite some time. Application gets hang and does not read data from socket every few hours. In thread dump, we have found below stack trace. "Receiver-146" daemon prio=10 tid=0x00007fb3fc010000 nid=0x7642 runnable [0x00007fb5906c5000] java.lang.Thread.State: RUNNABLE at java.net.SocketInputStream. socketRead0(Native Method) at java.net.SocketInputStream.read(SocketInputStream.java:150) at java.net.SocketInputStream.read(SocketInputStream.java:121) at java.io.BufferedInputStream.fill(BufferedInputStream.java:235) at java.io.BufferedInputStream.read1(BufferedInputStream.java:275) at java.io.BufferedInputStream.read(BufferedInputStream.java:334) - locked <0x00000007688f1ff0> (a java.io.BufferedInputStream) at org.smpp.TCPIPConnection.receive(TCPIPConnection.java:413) at org.smpp.ReceiverBase.receivePDUFromConnection(ReceiverBase.java:197) at org.smpp.Receiver.receiveAsync(Receiver.java:351) at org.smpp.ReceiverBase.process(ReceiverBase.java:96) at org.smpp.util.ProcessingThread.run(ProcessingThread.java:199) at java.lang.Thread.run(Thread.java:722) We are not able to trace the exact reason behind this? Kindly help. We are using 16 core machine and load on the system is around 30-40 at the time of issue. We use command ss dst <ip> to find out recv-q. Recently we have been facing issues with recv-q size getting hung, were in receive buffer gets stuck at some point of time. But recvQ size is not decreasing and as a result we are losing a lot of hits from the other side, our application is not accepting any data.

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