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• Setting up MySQL Linux slave with a Windows master

  - by philwilks

  I'm running a MySQL 5.0 database server on Windows Server 2008. The total size of the database is about 1Gb. I make daily backups, but I'd like to step up to having a slave server for extra protection. My thinking was that I wouldn't need the expense of a Windows machine to do this, and a Linux "cloud server" from RackSpace would do the job well for quite a low cost. However I have little experience with Linux, so I have a few questions... Does this sound like a good idea? Is there anything wrong with linking Windows and Linux MySQL servers? Does Linux have the equivalent of Remote Desktop Connection? If so can I use this from a Windows machine? Would a particular Linux distro be well suited to this task? RackSpace offer ArchLinux, CentOS, Debian, Fedora and Ubuntu. My immediate thinking is to go with Ubuntu as I've heard it's more friendly for people coming from a Windows background. Any comments you have would be very appreciated! Phil

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• Can MySQL use multiple data directories on different physical storage devices

  - by sirlark

  I am running MySQL with its data dir on a 128Gb SSD. I am dealing with large datasets (~20Gb) that are loaded and processed weekly, each stored in a separate DB for the purposes of time point comparisons. Putting all the data into a single database in unfeasible because the performance on such large databases is already a problem. However, I cannot keep more than 6 datasets on the SSD at a time. Right now I am manually dumping the oldest to much larger 2Tb spinning disk every week, and dropping the database to make space for the new one. But if I need one of the 'archived' databases (a semi regular occurrence) I have to drop a current one (after dumping), reload it, do what I need to, then reverse the results. Is there a way to configure MySQL to use multiple data directories, say one on the SSD and one on the 2Tb spinning disk, and 'merge' them transparently? If I could do this, then archiving would no longer mean "moved out of the database entirely", but instead would mean "moved onto the slow physical device". The time taken to do my queries on a spinning disk would be less than that taken to completely dump, drop, load, drop, reload two entire databases, so this is a win. I thought of using something like unionfs but I can't think of a way to control which database gets stored on which physical drive, because it works by merging on a directory level (from what I understand) so I'm still stuck with using multiple directories. Any help appreciated, thanks in advance

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• Apache and MySQL not working well after extending filesystem

  - by xtrimsky

  I had 4Gb on my /var (/dev/mapper/vg00-var) filesystem, and I wanted to extend it to 160Gb. I did it following this tutorial: http://faq.1and1.com/dedicated_servers/root_server/linux_admin_help/7.html Now I have 160: Filesystem Size Used Avail Use% Mounted on /dev/md1 4.0G 424M 3.6G 11% / /dev/mapper/vg00-usr 4.3G 1.4G 3.0G 32% /usr /dev/mapper/vg00-var 198G 6.5G 192G 4% /var /dev/mapper/vg00-home 4.3G 4.4M 4.3G 1% /home none 1.1G 0 1.1G 0% /tmp Now I have a problem, in order for Apache to work, each time I reboot, I need to also reboot apache: "apachectl -k restart" which is already terrible. I think this is because /var contains the htdocs The worst part is, mysql is not starting at all. Mysql has some files also in /var What have I done wrong ?? :( Thank you EDIT: Attaching /var/log/mysqld.log: 120602 11:17:44 InnoDB: Waiting for the background threads to start 120602 11:17:45 InnoDB: 1.1.8 started; log sequence number 8354009 120602 11:17:45 [ERROR] /usr/libexec/mysqld: unknown variable 'set-variable=local-infile=0' 120602 11:17:45 [ERROR] Aborting 120602 11:17:45 InnoDB: Starting shutdown... 120602 11:17:46 InnoDB: Shutdown completed; log sequence number 8354009 120602 11:17:46 [Note] /usr/libexec/mysqld: Shutdown complete 120602 11:17:46 mysqld_safe mysqld from pid file /var/run/mysqld/mysqld.pid ended

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• Fixed ruby/mysql connection with new libmysql.dll, and broke Apache in the process

  - by jmtoporek

  Ok so bit of background - all my development has been on a local Windows 7 machine. I had Apache with PHP/MySQL running with no issues. Been using ruby (1.9.3 and latest rails release 3.2.9) with built in webrick server, but had a devil of a time connecting to mysql. Did some research, updated my libmysql.dll file in c:/ruby/bin and it worked! Very happy... except now Apache stopped working. In my attempt to resolve the issue I found an older copy of libmysql.dll, renamed the new file, copied the old file back to c:ruby/bin and apache works, ruby does not. So I can take this ass backwards approach but obviously this seems pretty stupid. I was surprised that Apache was using the dll file in ruby/bin folder. I presume this is related to path variables perhaps? I guess I was hoping someone could direct me as to how I can use one dll file for apache and another for ruby. Or if you have some other smarter approach - I've smart enough to follow directions to install apache from scratch and enable php on windows as well as ubuntu, but I'm not much of a sys admin, just a semi competent web developer.

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• Mysql server high trafic makes websites really slow or unable to load

  - by Holapress

  Lately we have been having a lot of problems with our mysql server, from websites being really slow or even unable to load them at all. The server is a dedicated server that only runs our mysql database. i have been running some test using a profiler (JetProfiler) and tool to stress test (loadUI). If I use loadUI to connect with 50 simultaneous connections to one of our websites that runs a resently big query it will already make the website be unable to load. One of the things that makes me worried is that when I look at Jetprofile it always shows a Treads_connected of 1.00 and it seems that when it hits around 2.00 that I'm unable to connect. The 3 big peaks are when I run a test with loadUI, first one was 15 simultaneous connections wich made it still able for me to load the website but just really slow, the second one was 40 simultaneous connections which already made it impossible to load and the third one was with 100 connection which also didn't make it load anymore. Another thing that worries me is that in JetProfiler it says all the queries that get used are full table scans, could this maybe be the problem? The website I run as a test runs 3 queries, one for a menu that outputs around 1000 rows, one for the adds that has around 560 rows and a big one to get posts that has around 7000 rows (see screenshot bellow) I also have monitored the cpu of the server and there seems to be no problem there, even when I make a lot of connections with loadui the cpu stays low. I can't seem to figure out what is the main cause of the websites being unable to load when there is a high amount of traffic, if anyone has other suggestions for testing or something that might cause the problem please let me know.

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• MySQL fault linked to windows shutdown failure?

  - by Roy

  As far as i understand my computer is experiencing a strange coincidence (hopefully it isn't and somebody can enlighten me). Basically i shut down my laptop (Windows 7) (at 17.20, today, to be precise) successfully (and so also did XAMPP and its included components). However upon starting my laptop up again in the last hour i noticed that the MySQL module service in my xampp control panel was not coming on (just a big red tick; incidentally everything else was working fine). Now, i had the exact same problem about two weeks ago, whereby i just reinstalled xampp and got it working again. But rather than doing this straight away i thought i would just restart my laptop first. However it won't restart (or shut down first) to be precise now. I can remember Windows wasn't shutting down properly the last time it happened (about two weeks ago). Just wondered if this coincidence pointed to any specific diagnostic as regards the problem with MYSQL? If so i would appreciate greatly any help. Otherwise sorry for wasting your time.

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• MySQL : table organisation for very large sets with high update frequency

  - by Remiz

  I'm facing a dilemma in the choice of my MySQL schema application. So before I start here is a picture extremely simplified of my database : Schema here : http://i43.tinypic.com/2wp5lxz.png In one sentence : for each customer, the application harvest text data and attached tags to each data collected. As approximation of the usage of each table, here is what I expect : customer : ~5000, shouldn't grow fast data : 5 millions per customer, could double or triple for big customers. tag : ~1000, quite fixed size data_tag : hundred of millions per customer easily. Each data can be tagged a lot. The harvesting process is permanent, that means that around every 15 minutes new data come and are tagged, that require a very constant index refreshing. A lot of my queries are a SELECT COUNT of DATA between specific DATES and tagged with a specific TAG on a specific CUSTOMER (very rarely it will involve several customers). Here is the situation, you can imagine with this kind of volume of data I'm facing a challenge in term of data organization and indexing. Again, it's a very minimalistic and simplified version of my structure. My question is, is it better: to stick with this model and to manage crazy index optimization ? (which involves potentially having billions of rows in the data_tag table) change the schema and use one data table and one data_tag table per customer ? (which involves having 5000 tables on my database) I'm running all of this on a MySQL 5.0 dedicated server (quad-core, 8Go of ram) replicated. I only use InnoDB, I also have another server that run Sphinx. So knowing all of this, I can't wait to hear your opinion about this. Thanks.

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• Migrate from MySQL to PostgreSQL on Linux (Kubuntu)

  - by Dave Jarvis

  A long time ago in a galaxy far, far away... Trying to migrate a database from MySQL to PostgreSQL. All the documentation I have read covers, in great detail, how to migrate the structure. I have found very little documentation on migrating the data. The schema has 13 tables (which have been migrated successfully) and 9 GB of data. MySQL version: 5.1.x PostgreSQL version: 8.4.x I want to use the R programming language to analyze the data using SQL select statements; PostgreSQL has PL/R, but MySQL has nothing (as far as I can tell). A New Hope Create the database location (/var has insufficient space; also dislike having the PostgreSQL version number everywhere -- upgrading would break scripts!): sudo mkdir -p /home/postgres/main sudo cp -Rp /var/lib/postgresql/8.4/main /home/postgres sudo chown -R postgres.postgres /home/postgres sudo chmod -R 700 /home/postgres sudo usermod -d /home/postgres/ postgres All good to here. Next, restart the server and configure the database using these installation instructions: sudo apt-get install postgresql pgadmin3 sudo /etc/init.d/postgresql-8.4 stop sudo vi /etc/postgresql/8.4/main/postgresql.conf Change data_directory to /home/postgres/main sudo /etc/init.d/postgresql-8.4 start sudo -u postgres psql postgres \password postgres sudo -u postgres createdb climate pgadmin3 Use pgadmin3 to configure the database and create a schema. The episode continues in a remote shell known as bash, with both databases running, and the installation of a set of tools with a rather unusual logo: SQL Fairy. perl Makefile.PL sudo make install sudo apt-get install perl-doc (strangely, it is not called perldoc) perldoc SQL::Translator::Manual Extract a PostgreSQL-friendly DDL and all the MySQL data: sqlt -f DBI --dsn dbi:mysql:climate --db-user user --db-password password -t PostgreSQL > climate-pg-ddl.sql mysqldump --skip-add-locks --complete-insert --no-create-db --no-create-info --quick --result-file="climate-my.sql" --databases climate --skip-comments -u root -p The Database Strikes Back Recreate the structure in PostgreSQL as follows: pgadmin3 (switch to it) Click the Execute arbitrary SQL queries icon Open climate-pg-ddl.sql Search for TABLE " replace with TABLE climate." (insert the schema name climate) Search for on " replace with on climate." (insert the schema name climate) Press F5 to execute This results in: Query returned successfully with no result in 122 ms. Replies of the Jedi At this point I am stumped. Where do I go from here (what are the steps) to convert climate-my.sql to climate-pg.sql so that they can be executed against PostgreSQL? How to I make sure the indexes are copied over correctly (to maintain referential integrity; I don't have constraints at the moment to ease the transition)? How do I ensure that adding new rows in PostgreSQL will start enumerating from the index of the last row inserted (and not conflict with an existing primary key from the sequence)? How do you ensure the schema name comes through when transforming the data from MySQL to PostgreSQL inserts? Resources A fair bit of information was needed to get this far: https://help.ubuntu.com/community/PostgreSQL http://articles.sitepoint.com/article/site-mysql-postgresql-1 http://wiki.postgresql.org/wiki/Converting_from_other_Databases_to_PostgreSQL#MySQL http://pgfoundry.org/frs/shownotes.php?release_id=810 http://sqlfairy.sourceforge.net/ Thank you!

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• multple inner joins 3 or more crashes mysql server 5.1.30 opensolaris

  - by user331849

  when doing simple query on 4 inner joined tables, the server crashes with the output below appearing in the the mysql .err file. eg. select * from table1 inner join table2 on table1.a = table2.a and table1.b = table2.b inner join table3 on table2.a = table3.a and table2.c = table3.c inner join table4 on table3.a = table4.a and table3.d = table4.d If i remove one of the tables it executes fine. Likewise if I remove a different table, it executes fine. Though all tables have been checked anyway, this would suggest that it is not a problem specifically with one of the tables. mysql.err trace: 100503 18:13:19 - mysqld got signal 11 ; This could be because you hit a bug. It is also possible that this binary or one of the libraries it was linked against is corrupt, improperly built, or misconfigured. This error can also be caused by malfunctioning hardware. We will try our best to scrape up some info that will hopefully help diagnose the problem, but since we have already crashed, something is definitely wrong and this may fail. key_buffer_size=1572864000 read_buffer_size=2097152 max_used_connections=11 max_threads=151 threads_connected=10 It is possible that mysqld could use up to key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 2155437 K bytes of memory Hope that's ok; if not, decrease some variables in the equation. thd: 0x72febda8 Attempting backtrace. You can use the following information to find out where mysqld died. If you see no messages after this, something went terribly wrong... stack_bottom = fe07efb0 thread_stack 0x40000 Trying to get some variables. Some pointers may be invalid and cause the dump to abort... thd-query at be1021f0 = explain select * from business inner join timetable on business.id = timetable.business_id inner join timetableentry on timetable.business_id = timetableentry.business_id and timetable.kid = timetableentry.parent inner join staff on timetable.business_id = staff.business_id and timetable.staf f_person = staff.kid where business.id = '3050bb04fda41df64a9c1c149150026c' thd-thread_id=9 thd-killed=NOT_KILLED The manual page at http://dev.mysql.com/doc/mysql/en/crashing.html contains information that should help you find out what is causing the crash. 100503 18:13:19 mysqld_safe mysqld restarted 100503 18:13:20 InnoDB: Failed to set DIRECTIO_ON on file ./ibdata1: OPEN: Inap propriate ioctl for device, continuing anyway 100503 18:13:20 InnoDB: Failed to set DIRECTIO_ON on file ./ibdata1: OPEN: Inap propriate ioctl for device, continuing anyway InnoDB: The log sequence number in ibdata files does not match InnoDB: the log sequence number in the ib_logfiles! 100503 18:13:20 InnoDB: Database was not shut down normally! InnoDB: Starting crash recovery. InnoDB: Reading tablespace information from the .ibd files... InnoDB: Restoring possible half-written data pages from the doublewrite InnoDB: buffer... InnoDB: Last MySQL binlog file position 0 2731, file name ./mysql-bin.000093 100503 18:13:20 InnoDB: Started; log sequence number 0 2650338426 100503 18:13:20 [Note] Recovering after a crash using mysql-bin 100503 18:13:20 [Note] Starting crash recovery... 100503 18:13:20 [Note] Crash recovery finished. This on opensolaris SunOS 5.11 snv_111b i86pc i386 i86pc Mysql 5.1.30 Here is a snippet from the my.cnf file: key_buffer = 1500M max_allowed_packet = 1M thread_stack = 256K thread_cache_size = 8 sort_buffer_size = 2M read_buffer_size = 2M read_rnd_buffer_size = 8M table_cache = 512 tmp_table_size = 400M max_heap_table_size = 64M query_cache_limit = 20M query_cache_size = 200M Is this a bug or a configuration issue?

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• Having a problem inserting into database

  - by neo skosana

  I have a stored procedure: CREATE PROCEDURE busi_reg(IN instruc VARCHAR(10), IN tble VARCHAR(20), IN busName VARCHAR(50), IN busCateg VARCHAR(100), IN busType VARCHAR(50), IN phne VARCHAR(20), IN addrs VARCHAR(200), IN cty VARCHAR(50), IN prvnce VARCHAR(50), IN pstCde VARCHAR(10), IN nm VARCHAR(20), IN surname VARCHAR(20), IN eml VARCHAR(50), IN pswd VARCHAR(20), IN srce VARCHAR(50), IN refr VARCHAR(50), IN sess VARCHAR(50)) BEGIN INSERT INTO b_register SET business_name = busName, business_category = busCateg, business_type = busType, phone = phne, address = addrs, city = cty, province = prvnce, postal_code = pstCde, firstname = nm, lastname = surname, email = eml, password = pswd, source = srce, ref_no = refr; END; This is my php script: $busName = $_POST['bus_name']; $busCateg = $_POST['bus_cat']; $busType = $_POST['bus_type']; $phne = $_POST['phone']; $addrs = $_POST['address']; $cty = $_POST['city']; $prvnce = $_POST['province']; $pstCde = $_POST['postCode']; $nm = $_POST['name']; $surname = $_POST['lname']; $eml = $_POST['email']; $srce = $_POST['source']; $ref = $_POST['ref_no']; $result2 = $db->query("CALL busi_reg('$instruc', '$tble', '$busName', '$busCateg', '$busType', '$phne', '$addrs', '$cty', '$prvnce', '$pstCde', '$nm', '$surname', '$eml', '$pswd', '$srce', '$refr', '')"); if($result) { echo "Data has been saved"; } else { printf("Error: %s\n",$db->error); } Now the error that I get: Commands out of sync; you can't run this command now

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• PetaPoco with stored procedures

  - by Jalpesh P. Vadgama

  In previous post I have written that How we can use PetaPoco with the asp.net MVC. One of my dear friend Kirti asked me that How we can use it with Stored procedure. So decided to write a small post for that. So let’s first create a simple stored procedure for customer table which I have used in my previous post. I have written  simple code a single query that will return customers. Following is a code for that. CREATE PROCEDURE mysp_GetCustomers AS SELECT * FROM [dbo].Customer Now our stored procedure is ready so I just need to change my CustomDB file from the my previous post example like following. using System.Collections.Generic; namespace CodeSimplified.Models { public class CustomerDB { public IEnumerable<Customer> GetCustomers() { var databaseContext = new PetaPoco.Database("MyConnectionString"); return databaseContext.Query<Customer>("exec mysp_GetCustomers"); } } } That's It. Now It's time to run this in browser and Here is the output In future post I will explain How we can use PetaPoco with parameterised stored procedure. Hope you liked it.. Stay tuned for more.. Happy programming.

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• MySQL vs. SQL Server Go daddy, What is the difference bewteen hosted DB and App_Data Db.

  - by Nate Gates

  I'm using Goddady for site hosting, and I'm currently using MySQL, because there are less limits on size,etc. My question is what is the difference between using a hosted Godaddy Db such as MySQL vs. creating a SQL Serverdatabase in the the App_Data folder? My guess is security? Would it be a bad idea to use a SQL ServerDB thats located in the App_Data folder? Additional Well I am able to create a .mdf (SQL Server DB file) in the App_Data folder, but I'm really unsure if should use that or not, If I did use it it would simplify using some of the Microsoft tools. Like I said my guess is that it would be less secure, but I don't really know. I know I have a 10gb, file system limit, so I'm assuming my db would have to share that space.

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• MySQL vs. SQL Server Go daddy, What is the difference bewteen hosted DB and App_Data Db

  - by Nate Gates

  I'm using Goddady for site hosting, and I'm currently using MySQL, because there are less limits on size,etc. My question is what is the difference between using a hosted Godaddy Db such as MySQL vs. creating a SQL Serverdatabase in the the App_Data folder? My guess is security? Would it be a bad idea to use a SQL ServerDB thats located in the App_Data folder? Additional Well I am able to create a .mdf (SQL Server DB file) in the App_Data folder, but I'm really unsure if should use that or not, If I did use it it would simplify using some of the Microsoft tools. Like I said my guess is that it would be less secure, but I don't really know. I know I have a 10gb, file system limit, so I'm assuming my db would have to share that space.

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• How would I get work as a PHP, MySQL Developer?

  - by Matthew

  I've been working with PHP and MySQL to create various projects that I've been interested in, I can design the user interface, and the back end programming. I've created simple social networking sites, book marking sites, and project management software. So what steps would I take to get a job? Is there a market for PHP, MySQL web developers? Is it possible to take instructions and work from home for someone? How would I accept payment? Should I start a company? or work for someone? I am currently based in South Africa, many of the companies are lacking the innovation that I'm seeking for in a company.

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• Is "PHP and MySQL Web Development, 4th ed." an outdated book to learn from?

  - by ForeverLearnNeverMaster

  I want to get into web stuff, and thought of going with PHP+MySQL. I have experience in C#, C++, desktop graphics, but no web stuff besides HTML, CSS which I started learning 2 months ago. On SO PHP-book question, the highest rated book is "PHP Objects, Patterns and Practice". However, I'm not sure if it's a book to start PHP with... or is it? Most of the books mentioned in that SO question seem to be for those who already know PHP. I considered "PHP & MySQL Web Development, 4th Ed.", but someone mentioned that "it uses the mysql_* functions which are almost deprecated." Help?

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• Attending MySQL Connect? Your Opinion Matters.

  - by Monica Kumar

  Take the MySQL Connect 2012 Survey Thanks to everyone who is at the first ever MySQL Connect Conference in San Francisco this weekend! Don't forget to take your Conference and Session Surveys. Your opinions help shape next year's conference. Take a survey for each of the sessions you attend and be entered into a drawing for one prize for $200 American Express Gift Certificate. Fill in the daily conference survey and be entered into a drawing for one prize for a $500 American Express Gift Card Surveys are located here. Make your opinion count! Take the survey now. Congratulations to Robin Schumacher from DataStax as he is the winner of the Saturday survey!

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• MySQL vs. SQL Server GoDaddy, What is the difference between hosted DB and App_Data Db

  - by Nate Gates

  I'm using GoDdady for site hosting, and I'm currently using MySQL, because there are less limits on size,etc. My question is what is the difference between using a hosted GoDaddy Db such as MySQL vs. creating a SQL Server database in the the App_Data folder? My guess is security? Would it be a bad idea to use a SQL ServerDB that's located in the App_Data folder? Additional Well I am able to create a .mdf (SQL Server DB file) in the App_Data folder, but I'm really unsure if should use that or not, If I did use it it would simplify using some of the Microsoft tools. Like I said my guess is that it would be less secure, but I don't really know. I know I have a 10gb, file system limit, so I'm assuming my db would have to share that space.

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• Apache 2.4 PHP 5.4 MySQL enabled but not found? [migrated]

  - by jurchiks

  Just tried setting up the latest Apache (2.4.1 x86 VC10 from apachelounge) and PHP (5.4 VC9 TS X86, with the php5apache2_4.dll) on my PC and ran into this weird problem; in my php.ini I have enabled all of the following: extension=php_mysql.dll extension=php_mysqli.dll extension=php_pdo_mysql.dll but when I try to print the available PDO's using this: print_r(PDO::getAvailableDrivers()); It gives me an empty array. PhpMyAdmin and MantisBT also refuse to work, saying that the mysql extension is missing. phpinfo() gives this: PDO PDO support enabled PDO drivers no value and when searching for mysql, only the mysqlnd section pops up... The DLLs are there in the D:/php/ext folder and no errors pop up when starting up Apache, as well as no errors in the Windows Event Log, and PHP itself has no error log anyway. What could possibly be the problem with this? Before this I had Apache 2.2.22 from apachelounge and PHP 5.3.9 and I had no problems. Now nothing works...

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• Are there any conceptual drawbacks to building a web app with C++ and MySQL?

  - by jnthnclrk

  I've inherited a pretty interesting project where there is a good opportunity to take an existing piece of software and turn it into a SaaS web app. As the project is inherited, the code base/ framework is already defined as C++ and MySQL. The app itself is compiled and run as an EXE on Windows Server. The UI is web based and the app works as a kind of server. From what I do know of modern web apps, this is perhaps an unusual choice. These days, most people seem to opt for a PHP framework or Ruby on Rails. Certainly that is the impression I get from reading blogs on the subject. So, I'm very interested to know if a C++ EXE backed by MySQL is a solid foundation for a web app, or whether we should be looking to build in another way?

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• Is backing up a MySQL database in GIT a good idea?

  - by wobbily_col

  I am trying to improve the backup situation for my application. I have a Django application and MySQL database. I read an article suggesting backing up the database in Git. On the one hand I like it, as it will keep a copy of the data and the code in synch. But GIT is a designed for code, not for data. As such it will be doing a lot of extra work diffing the mysql dump every commit, which is not really necessary. If I compress the file before storing it, will git diff the files? (The dump file is currently 100MB uncompressed, 5.7Mb when bzipped). Edit: the code and database schema definitions are already in GIT, it is really the data I am concerned about backing up now.

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• MySQL tables corrupted and need to be repaired,how to fix them and how to prevent this [on hold]

  - by Hbirjand

  We have developed a software that uses,MySQL database,and after some month of usage,some of the database tables had been corrupted and need to be repaired,what is the cause of this corruption? How can we fix them? How can we prevent the database tables from corruption. Because of the corruption,we are not able to create a backup using Navicat,and we can not generate a dump too. Is that possible to fix this tables using MySQL engine,and some of this corruption is about empty fields in database tables.

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• Tomcat 7 taking ages to start up after upgrade

  - by Lawrence

  I recently updated my server installation from Tomcat 6 to Tomcat 7, in order to take advantage of better connection pooling. My project uses Hibernate, for object persistance, a Mysql 5.5.20 database, and memcached for caching. When I was using Tomcat 6, Tomcat would start in about 8 seconds. After moving to Tomcat 7, it now takes between 75 - 80 seconds to start (this is on a Macbook pro 15", core i7 2Ghz, 8Gb of RAM). The only thing that has really changed between during the move from Tomcat 6 to 7 has been my context.xml file, which controls the connection pooling information: <Context antiJARLocking="true" reloadable="true" path=""> <Resource name="jdbc/test-db" auth="Container" type="javax.sql.DataSource" factory="org.apache.tomcat.jdbc.pool.DataSourceFactory" testOnBorrow="true" testOnReturn="false" testWhileIdle="true" validationQuery="SELECT 1" validationQueryTimeout="20000" validationInterval="30000" timeBetweenEvictionRunsMillis="60000" logValidationErrors="true" autoReconnect="true" username="webuser" password="xxxxxxx" driverClassName="com.mysql.jdbc.Driver" url="jdbc:mysql://databasename.us-east-1.rds.amazonaws.com:3306/test-db" maxActive="15" minIdle="2" maxIdle="10" maxWait="10000" maxAge="7200000"/> </Context> Now, as you can see, the database is running on Amazon RDS (where our live servers are), and thus is about 200ms round trip time away from my machine. I have already checked that I have security permissions to that database from my machine, (and anyway, it connects after 75 secs, so it cant be that). My initial thought was that Tomcat 7 and hibernate are doing something weird (like pre-instantiating a bunch of connections or something), and the latency to the database is amplifying the effects. While trying to diagnose the problem, I used jstack to get a stack trace of the Tomcat 7 server while its doing its startup thing. Here is the stack trace... Full thread dump Java HotSpot(TM) 64-Bit Server VM (20.12-b01-434 mixed mode): "Attach Listener" daemon prio=9 tid=7fa4c0038800 nid=0x10c39a000 waiting on condition [00000000] java.lang.Thread.State: RUNNABLE "Abandoned connection cleanup thread" daemon prio=5 tid=7fa4bb810000 nid=0x10f3ba000 in Object.wait() [10f3b9000] java.lang.Thread.State: WAITING (on object monitor) at java.lang.Object.wait(Native Method) - waiting on <7f40a0070> (a java.lang.ref.ReferenceQueue$Lock) at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118) - locked <7f40a0070> (a java.lang.ref.ReferenceQueue$Lock) at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134) at com.mysql.jdbc.NonRegisteringDriver$1.run(NonRegisteringDriver.java:93) "PoolCleaner[545768040:1352724902327]" daemon prio=5 tid=7fa4be852800 nid=0x10e772000 in Object.wait() [10e771000] java.lang.Thread.State: TIMED_WAITING (on object monitor) at java.lang.Object.wait(Native Method) - waiting on <7f40c7c90> (a java.util.TaskQueue) at java.util.TimerThread.mainLoop(Timer.java:509) - locked <7f40c7c90> (a java.util.TaskQueue) at java.util.TimerThread.run(Timer.java:462) "localhost-startStop-1" daemon prio=5 tid=7fa4bd034800 nid=0x10d66b000 runnable [10d668000] java.lang.Thread.State: RUNNABLE at java.net.SocketInputStream.socketRead0(Native Method) at java.net.SocketInputStream.read(SocketInputStream.java:129) at com.mysql.jdbc.util.ReadAheadInputStream.fill(ReadAheadInputStream.java:114) at com.mysql.jdbc.util.ReadAheadInputStream.readFromUnderlyingStreamIfNecessary(ReadAheadInputStream.java:161) at com.mysql.jdbc.util.ReadAheadInputStream.read(ReadAheadInputStream.java:189) - locked <7f3673be0> (a com.mysql.jdbc.util.ReadAheadInputStream) at com.mysql.jdbc.MysqlIO.readFully(MysqlIO.java:3014) at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3467) at com.mysql.jdbc.MysqlIO.reuseAndReadPacket(MysqlIO.java:3456) at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3997) at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:2468) at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2629) at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2713) - locked <7f366a1c0> (a com.mysql.jdbc.JDBC4Connection) at com.mysql.jdbc.ConnectionImpl.configureClientCharacterSet(ConnectionImpl.java:1930) at com.mysql.jdbc.ConnectionImpl.initializePropsFromServer(ConnectionImpl.java:3571) at com.mysql.jdbc.ConnectionImpl.connectOneTryOnly(ConnectionImpl.java:2445) at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2215) - locked <7f366a1c0> (a com.mysql.jdbc.JDBC4Connection) at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:813) at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:47) at sun.reflect.GeneratedConstructorAccessor10.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at com.mysql.jdbc.Util.handleNewInstance(Util.java:411) at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:399) at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:334) at org.apache.tomcat.jdbc.pool.PooledConnection.connectUsingDriver(PooledConnection.java:278) at org.apache.tomcat.jdbc.pool.PooledConnection.connect(PooledConnection.java:182) at org.apache.tomcat.jdbc.pool.ConnectionPool.createConnection(ConnectionPool.java:699) at org.apache.tomcat.jdbc.pool.ConnectionPool.borrowConnection(ConnectionPool.java:631) at org.apache.tomcat.jdbc.pool.ConnectionPool.init(ConnectionPool.java:485) at org.apache.tomcat.jdbc.pool.ConnectionPool.<init>(ConnectionPool.java:143) at org.apache.tomcat.jdbc.pool.DataSourceProxy.pCreatePool(DataSourceProxy.java:116) - locked <7f34f0dc8> (a org.apache.tomcat.jdbc.pool.DataSource) at org.apache.tomcat.jdbc.pool.DataSourceProxy.createPool(DataSourceProxy.java:103) at org.apache.tomcat.jdbc.pool.DataSourceFactory.createDataSource(DataSourceFactory.java:539) at org.apache.tomcat.jdbc.pool.DataSourceFactory.getObjectInstance(DataSourceFactory.java:237) at org.apache.naming.factory.ResourceFactory.getObjectInstance(ResourceFactory.java:143) at javax.naming.spi.NamingManager.getObjectInstance(NamingManager.java:304) at org.apache.naming.NamingContext.lookup(NamingContext.java:843) at org.apache.naming.NamingContext.lookup(NamingContext.java:154) at org.apache.naming.NamingContext.lookup(NamingContext.java:831) at org.apache.naming.NamingContext.lookup(NamingContext.java:168) at org.apache.catalina.core.NamingContextListener.addResource(NamingContextListener.java:1061) at org.apache.catalina.core.NamingContextListener.createNamingContext(NamingContextListener.java:671) at org.apache.catalina.core.NamingContextListener.lifecycleEvent(NamingContextListener.java:270) at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:90) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:5173) - locked <7f46b07f0> (a org.apache.catalina.core.StandardContext) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) - locked <7f46b07f0> (a org.apache.catalina.core.StandardContext) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:680) "Catalina-startStop-1" daemon prio=5 tid=7fa4b7a5e800 nid=0x10d568000 waiting on condition [10d567000] java.lang.Thread.State: WAITING (parking) at sun.misc.Unsafe.park(Native Method) - parking to wait for <7f480e970> (a java.util.concurrent.FutureTask$Sync) at java.util.concurrent.locks.LockSupport.park(LockSupport.java:156) at java.util.concurrent.locks.AbstractQueuedSynchronizer.parkAndCheckInterrupt(AbstractQueuedSynchronizer.java:811) at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedInterruptibly(AbstractQueuedSynchronizer.java:969) at java.util.concurrent.locks.AbstractQueuedSynchronizer.acquireSharedInterruptibly(AbstractQueuedSynchronizer.java:1281) at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:218) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:1123) - locked <7f453c630> (a org.apache.catalina.core.StandardHost) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:800) - locked <7f453c630> (a org.apache.catalina.core.StandardHost) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) - locked <7f453c630> (a org.apache.catalina.core.StandardHost) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1559) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1549) at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) at java.util.concurrent.FutureTask.run(FutureTask.java:138) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) at java.lang.Thread.run(Thread.java:680) "GC Daemon" daemon prio=2 tid=7fa4b9912800 nid=0x10d465000 in Object.wait() [10d464000] java.lang.Thread.State: TIMED_WAITING (on object monitor) at java.lang.Object.wait(Native Method) - waiting on <7f4506d28> (a sun.misc.GC$LatencyLock) at sun.misc.GC$Daemon.run(GC.java:100) - locked <7f4506d28> (a sun.misc.GC$LatencyLock) "Low Memory Detector" daemon prio=5 tid=7fa4b480b800 nid=0x10c8ae000 runnable [00000000] java.lang.Thread.State: RUNNABLE "C2 CompilerThread1" daemon prio=9 tid=7fa4b480b000 nid=0x10c7ab000 waiting on condition [00000000] java.lang.Thread.State: RUNNABLE "C2 CompilerThread0" daemon prio=9 tid=7fa4b480a000 nid=0x10c6a8000 waiting on condition [00000000] java.lang.Thread.State: RUNNABLE "Signal Dispatcher" daemon prio=9 tid=7fa4b4809800 nid=0x10c5a5000 runnable [00000000] java.lang.Thread.State: RUNNABLE "Surrogate Locker Thread (Concurrent GC)" daemon prio=5 tid=7fa4b4808800 nid=0x10c4a2000 waiting on condition [00000000] java.lang.Thread.State: RUNNABLE "Finalizer" daemon prio=8 tid=7fa4b793f000 nid=0x10c297000 in Object.wait() [10c296000] java.lang.Thread.State: WAITING (on object monitor) at java.lang.Object.wait(Native Method) - waiting on <7f451c8f0> (a java.lang.ref.ReferenceQueue$Lock) at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:118) - locked <7f451c8f0> (a java.lang.ref.ReferenceQueue$Lock) at java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:134) at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:159) "Reference Handler" daemon prio=10 tid=7fa4b793e000 nid=0x10c194000 in Object.wait() [10c193000] java.lang.Thread.State: WAITING (on object monitor) at java.lang.Object.wait(Native Method) - waiting on <7f452e168> (a java.lang.ref.Reference$Lock) at java.lang.Object.wait(Object.java:485) at java.lang.ref.Reference$ReferenceHandler.run(Reference.java:116) - locked <7f452e168> (a java.lang.ref.Reference$Lock) "main" prio=5 tid=7fa4b7800800 nid=0x104329000 waiting on condition [104327000] java.lang.Thread.State: WAITING (parking) at sun.misc.Unsafe.park(Native Method) - parking to wait for <7f480e9a0> (a java.util.concurrent.FutureTask$Sync) at java.util.concurrent.locks.LockSupport.park(LockSupport.java:156) at java.util.concurrent.locks.AbstractQueuedSynchronizer.parkAndCheckInterrupt(AbstractQueuedSynchronizer.java:811) at java.util.concurrent.locks.AbstractQueuedSynchronizer.doAcquireSharedInterruptibly(AbstractQueuedSynchronizer.java:969) at java.util.concurrent.locks.AbstractQueuedSynchronizer.acquireSharedInterruptibly(AbstractQueuedSynchronizer.java:1281) at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:218) at java.util.concurrent.FutureTask.get(FutureTask.java:83) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:1123) - locked <7f451fd90> (a org.apache.catalina.core.StandardEngine) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:302) - locked <7f451fd90> (a org.apache.catalina.core.StandardEngine) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) - locked <7f451fd90> (a org.apache.catalina.core.StandardEngine) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:443) - locked <7f451fd90> (a org.apache.catalina.core.StandardEngine) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) - locked <7f453e810> (a org.apache.catalina.core.StandardService) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:732) - locked <7f4506d58> (a [Lorg.apache.catalina.Service;) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:150) - locked <7f44f7ba0> (a org.apache.catalina.core.StandardServer) at org.apache.catalina.startup.Catalina.start(Catalina.java:684) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:322) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:451) "VM Thread" prio=9 tid=7fa4b7939800 nid=0x10c091000 runnable "Gang worker#0 (Parallel GC Threads)" prio=9 tid=7fa4b7802000 nid=0x10772b000 runnable "Gang worker#1 (Parallel GC Threads)" prio=9 tid=7fa4b7802800 nid=0x10782e000 runnable "Gang worker#2 (Parallel GC Threads)" prio=9 tid=7fa4b7803000 nid=0x107931000 runnable "Gang worker#3 (Parallel GC Threads)" prio=9 tid=7fa4b7804000 nid=0x107a34000 runnable "Gang worker#4 (Parallel GC Threads)" prio=9 tid=7fa4b7804800 nid=0x107b37000 runnable "Gang worker#5 (Parallel GC Threads)" prio=9 tid=7fa4b7805000 nid=0x107c3a000 runnable "Gang worker#6 (Parallel GC Threads)" prio=9 tid=7fa4b7805800 nid=0x107d3d000 runnable "Gang worker#7 (Parallel GC Threads)" prio=9 tid=7fa4b7806800 nid=0x107e40000 runnable "Concurrent Mark-Sweep GC Thread" prio=9 tid=7fa4b78e3800 nid=0x10bd0b000 runnable "Gang worker#0 (Parallel CMS Threads)" prio=9 tid=7fa4b78e2800 nid=0x10b305000 runnable "Gang worker#1 (Parallel CMS Threads)" prio=9 tid=7fa4b78e3000 nid=0x10b408000 runnable "VM Periodic Task Thread" prio=10 tid=7fa4b4815800 nid=0x10c9b1000 waiting on condition "Exception Catcher Thread" prio=10 tid=7fa4b7801800 nid=0x104554000 runnable JNI global references: 919 The only thing I can figure out from this is that it looks like the mysql jdbc drivers might have something to do with the long start up (the various stack traces I took during the start up process all pretty much look the same as this). Could anyone shed some light on what might be causing this? Have I done something dense in my context.xml? Is hibernate perhaps to blame?

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• Question About mk-table-checksum Results

  - by stevenmusumeche

  Hello, I have 1 master and 2 slaves. I am using MySQL 5.1.42 on all servers. I am attempting to use mk-table-checksum to verify that their data is in sync, but I am getting unexpected results on one of the slaves. First, I generate the checksums on the master like this: mk-table-checksum h=localhost --databases MYDB --tables {$table_list} --replicate=MYDB.mk_checksum --chunk-size=10M My understanding is that this runs the checksum queries on the master which then propagate via normal replication to the slaves. So, no locking is needed because the slaves will be at the same logical point in time when they run the checksum queries on themselves. Is this correct? Next, to verify that the checksums match, I run this on the master: mk-table-checksum --databases MYDB --replicate=IRC.mk_checksum --replicate-check 1 h=localhost,u=maatkit,p=xxxx If there are any differences, I repair the slaves like this: mk-table-sync --execute --verbose --replicate IRC.mk_checksum h=localhost,u=maatkit,p=xxxx After doing all of this, I repaired both slaves with mk-table-sync. However, everytime I run this sequence (after everything has already been repaired), one slave is perfectly in sync but one slave always has a few tables out of sync. I am 99.999% sure that the data on the slaves matches, since I repaired everything and the tables were not even updated on the master between runs of the checksum script. What would cause a few tables to always show out of sync on only one of the slaves? I am stuck. Here is the output: Differences on h=x.x.x.x,p=...,u=maatkit DB TBL CHUNK CNT_DIFF CRC_DIFF BOUNDARIES IRC product 10 0 1 product_id = 147377 AND product_id < 162085 IRC post_order_survey 0 0 1 1=1 IRC mk_heartbeat 0 0 1 1=1 IRC mailing_list 0 0 1 1=1 IRC honey_pot_log 0 0 1 1=1 IRC product 12 0 1 product_id = 176793 AND product_id < 191501 IRC product 18 0 1 product_id = 265041 IRC orders 26 0 1 order_id = 694472 IRC orders_product 6 0 1 op_id = 935375

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• What is the best time to set the IP address for a server headed to a server colocation facility?

  - by jim_m_somewhere

  What is the best time to set the IP address for a server? I have a server that I am going to install the OS on and then I am going to send it to a server colocation facility. The server is going to have Internet facing services (www, email, etc.) I can set up a "fake" IP address during install (by fake I mean private as in RFC 1918) and change the "fake" IPs to the real IPs once I set up the colocation service. The other option is to set up the colocation service...wait for them to give me the "real" IPs and use them during the OS install. The ramification are that...if I use "fake" IPs during install...I will have to wait before I set up things like SSL certs. If I wait for IPs from the colocation provider...then I can set up SSL certs that use the "correct" (as in "real") IP addresses...no changes to the certs until they expire. Do the "gotchas" of changing an IP address on a server outweigh the benefits of a quick install? The other danger with using "fake" IPs is that I could make a mistake when I go through the various files to change the IP address to the "live" IP address. Server OS: CentOS 6.2 or CentOS 6.3, 64 bit. Apps: Apache 2.4.X httpd, MySQL 5.X (will eventually use replication)

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• Can a sub-procedure procedure lock and modify the same rows FOR UPDATE that its calling procedure al

  - by RenderIn

  Will the following code lead to a deadlock or should it work without any problem? I've got something similar and it's working but I didn't think it would. I thought the parent procedure's lock would have resulted in a deadlock for the child procedure but it doesn't seem to be. If it works, why? My guess is that the nested FOR UPDATE is not running into a deadlock because it's smart enough to realize that it is being called by the same procedure that has the current lock. Would this be a deadlock if FOO_PROC was not a nested procedure? DECLARE FOO_PROC(c_someName VARCHAR2) as cursor c1 is select * from awesome_people where person_name = c_someName FOR UPDATE; BEGIN open c1; update awesome_people set person_name = UPPER(person_name); close c1; END FOO_PROC; cursor my_cur is select * from awesome_people where person_name = 'John Doe' FOR UPDATE; BEGIN for onerow in c1 loop FOO_PROC(onerow.person_name); end loop; END;

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