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  • What is your favorite NumPy feature?

    - by Gökhan Sever
    Share your favourite NumPy features / tips & tricks. Please try to limit one feature per line. The question is posted in parallel at ask.scipy.org We welcome you to join the conversation there -with the main idea of collecting the Scientific Python related questions under one roof. Feel free to dual-post or post at your favourite site...

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  • P=NP?-Problem: What are the most promising methods?

    - by phimuemue
    Hello everybody, I know that P=NP has not been solved up to now, but can anybody tell me something about the following: What are currently the most promising mathematical / computer scientific methods that could be helpful to tackle this problem? Or are there even none such methods known to be potentially helpful up to now? Is there any (free) compendium on this topic where I can find all / most of the research done in this area?

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  • How much one can trust the information published in the wikipedia? [closed]

    - by AKN
    Wikipedia has answers for many question almost in all categories. Let it be Technical Sports Personalities Important events (this day, that day) Scientific terms etc... I know the source of contents are from volunteers (Please correct me if I'm wrong here). But what measures they have to ensure that contents are properly written. Even if they have admin/moderator and all that, they may not be experts in all areas. So how do they validate the appropriateness of the content?

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  • Contour graphs in JS or PHP ?

    - by vince83000
    Hi everybody, For a web application, I have to make a scientific graph. You can see an example here : http://www.ego-network.org/monitoring/plot_deployment.php?glider=eudoxus&deployment=Cascade&posti=4&postj=scaptemperature_lastweek&pposti=4&ppostj=scaoxygen_lastweek&hchk=&defsct=default_scatter I have 2 coordinates, time and depth, and I want the temperature to be represent by a color, exactly like the example. Someone know how to make this king of graph ? Thanks !

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  • C#: Perform Operations on GPU, not CPU (Calculate Pi)

    - by Alex
    Hello, I've recently read a lot about software (mostly scientific/math and encryption related) that moves part of their calculation onto the GPU which causes a 100-1000 (!) fold increase in speed for supported operations. Is there a library, API or other way to run something on the GPU via C#? I'm thinking of simple Pi calculation. I have a GeForce 8800 GTX if that's relevant at all (would prefer card independent solution though). Any hints are appreciated!

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  • take performance as the only criterion for a smal site, which framework should I choose on a shared

    - by john
    Dear friends, I'm trying to set up a small full functional website for a small community on a shared hosting. Scientific computing is quite heavy. Scalability is not important. The only criterion is performance. Which framework would you suggest among the following:(or more) from your list) 1)Ruby on Rails 2) Grails 3) asp.net 4) zend I'm really new to this area, only starting reading some books and googling different blogs...so your expertise is really appreciated! thanks!

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  • C++ Expression Templates

    - by yCalleecharan
    Hi, I currently use C for numerical computations. I've heard that using C++ Expression Templates is better for scientific computing. What are C++ Expression Templates in simple terms? Are there books around that discuss numerical methods/computations using C++ Expression Templates? In what way, C++ Expression Templates are better than using pure C? Thanks a lot

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  • Which computing publisher has the best refereed research resources for the working programmer?

    - by Stephen
    When I have a problem I often search the computing literature. Some of the resources[*] I use are: The professional associations? ACM Digital Library IEEE Xplore The scientific publishers? Lecture Notes in Computer Science HCI Bibliography What do you use? What is the best resource source (if there is one) for the working programmer? [*] after stackoverflow and google of course :) PS what tags should I use for this question?

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  • A Plot Graph .NET WindowsForm Component Free

    - by user255946
    Hello All, I'm searching for a plot .NET component to plot a 2D line chart, given an array of data. It will be used with WindowsForm (C#) and It will be very helpful if it could be freeware. It is for a scientific application. This is my first asked question in stackoverflow, and excuse me for my terrible English written.

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  • Red Gate Coder interviews: Alex Davies

    - by Michael Williamson
    Alex Davies has been a software engineer at Red Gate since graduating from university, and is currently busy working on .NET Demon. We talked about tackling parallel programming with his actors framework, a scientific approach to debugging, and how JavaScript is going to affect the programming languages we use in years to come. So, if we start at the start, how did you get started in programming? When I was seven or eight, I was given a BBC Micro for Christmas. I had asked for a Game Boy, but my dad thought it would be better to give me a proper computer. For a year or so, I only played games on it, but then I found the user guide for writing programs in it. I gradually started doing more stuff on it and found it fun. I liked creating. As I went into senior school I continued to write stuff on there, trying to write games that weren’t very good. I got a real computer when I was fourteen and found ways to write BASIC on it. Visual Basic to start with, and then something more interesting than that. How did you learn to program? Was there someone helping you out? Absolutely not! I learnt out of a book, or by experimenting. I remember the first time I found a loop, I was like “Oh my God! I don’t have to write out the same line over and over and over again any more. It’s amazing!” When did you think this might be something that you actually wanted to do as a career? For a long time, I thought it wasn’t something that you would do as a career, because it was too much fun to be a career. I thought I’d do chemistry at university and some kind of career based on chemical engineering. And then I went to a careers fair at school when I was seventeen or eighteen, and it just didn’t interest me whatsoever. I thought “I could be a programmer, and there’s loads of money there, and I’m good at it, and it’s fun”, but also that I shouldn’t spoil my hobby. Now I don’t really program in my spare time any more, which is a bit of a shame, but I program all the rest of the time, so I can live with it. Do you think you learnt much about programming at university? Yes, definitely! I went into university knowing how to make computers do anything I wanted them to do. However, I didn’t have the language to talk about algorithms, so the algorithms course in my first year was massively important. Learning other language paradigms like functional programming was really good for breadth of understanding. Functional programming influences normal programming through design rather than actually using it all the time. I draw inspiration from it to write imperative programs which I think is actually becoming really fashionable now, but I’ve been doing it for ages. I did it first! There were also some courses on really odd programming languages, a bit of Prolog, a little bit of C. Having a little bit of each of those is something that I would have never done on my own, so it was important. And then there are knowledge-based courses which are about not programming itself but things that have been programmed like TCP. Those are really important for examples for how to approach things. Did you do any internships while you were at university? Yeah, I spent both of my summers at the same company. I thought I could code well before I went there. Looking back at the crap that I produced, it was only surpassed in its crappiness by all of the other code already in that company. I’m so much better at writing nice code now than I used to be back then. Was there just not a culture of looking after your code? There was, they just didn’t hire people for their abilities in that area. They hired people for raw IQ. The first indicator of it going wrong was that they didn’t have any computer scientists, which is a bit odd in a programming company. But even beyond that they didn’t have people who learnt architecture from anyone else. Most of them had started straight out of university, so never really had experience or mentors to learn from. There wasn’t the experience to draw from to teach each other. In the second half of my second internship, I was being given tasks like looking at new technologies and teaching people stuff. Interns shouldn’t be teaching people how to do their jobs! All interns are going to have little nuggets of things that you don’t know about, but they shouldn’t consistently be the ones who know the most. It’s not a good environment to learn. I was going to ask how you found working with people who were more experienced than you… When I reached Red Gate, I found some people who were more experienced programmers than me, and that was difficult. I’ve been coding since I was tiny. At university there were people who were cleverer than me, but there weren’t very many who were more experienced programmers than me. During my internship, I didn’t find anyone who I classed as being a noticeably more experienced programmer than me. So, it was a shock to the system to have valid criticisms rather than just formatting criticisms. However, Red Gate’s not so big on the actual code review, at least it wasn’t when I started. We did an entire product release and then somebody looked over all of the UI of that product which I’d written and say what they didn’t like. By that point, it was way too late and I’d disagree with them. Do you think the lack of code reviews was a bad thing? I think if there’s going to be any oversight of new people, then it should be continuous rather than chunky. For me I don’t mind too much, I could go out and get oversight if I wanted it, and in those situations I felt comfortable without it. If I was managing the new person, then maybe I’d be keener on oversight and then the right way to do it is continuously and in very, very small chunks. Have you had any significant projects you’ve worked on outside of a job? When I was a teenager I wrote all sorts of stuff. I used to write games, I derived how to do isomorphic projections myself once. I didn’t know what the word was so I couldn’t Google for it, so I worked it out myself. It was horrifically complicated. But it sort of tailed off when I started at university, and is now basically zero. If I do side-projects now, they tend to be work-related side projects like my actors framework, NAct, which I started in a down tools week. Could you explain a little more about NAct? It is a little C# framework for writing parallel code more easily. Parallel programming is difficult when you need to write to shared data. Sometimes parallel programming is easy because you don’t need to write to shared data. When you do need to access shared data, you could just have your threads pile in and do their work, but then you would screw up the data because the threads would trample on each other’s toes. You could lock, but locks are really dangerous if you’re using more than one of them. You get interactions like deadlocks, and that’s just nasty. Actors instead allows you to say this piece of data belongs to this thread of execution, and nobody else can read it. If you want to read it, then ask that thread of execution for a piece of it by sending a message, and it will send the data back by a message. And that avoids deadlocks as long as you follow some obvious rules about not making your actors sit around waiting for other actors to do something. There are lots of ways to write actors, NAct allows you to do it as if it was method calls on other objects, which means you get all the strong type-safety that C# programmers like. Do you think that this is suitable for the majority of parallel programming, or do you think it’s only suitable for specific cases? It’s suitable for most difficult parallel programming. If you’ve just got a hundred web requests which are all independent of each other, then I wouldn’t bother because it’s easier to just spin them up in separate threads and they can proceed independently of each other. But where you’ve got difficult parallel programming, where you’ve got multiple threads accessing multiple bits of data in multiple ways at different times, then actors is at least as good as all other ways, and is, I reckon, easier to think about. When you’re using actors, you presumably still have to write your code in a different way from you would otherwise using single-threaded code. You can’t use actors with any methods that have return types, because you’re not allowed to call into another actor and wait for it. If you want to get a piece of data out of another actor, then you’ve got to use tasks so that you can use “async” and “await” to await asynchronously for it. But other than that, you can still stick things in classes so it’s not too different really. Rather than having thousands of objects with mutable state, you can use component-orientated design, where there are only a few mutable classes which each have a small number of instances. Then there can be thousands of immutable objects. If you tend to do that anyway, then actors isn’t much of a jump. If I’ve already built my system without any parallelism, how hard is it to add actors to exploit all eight cores on my desktop? Usually pretty easy. If you can identify even one boundary where things look like messages and you have components where some objects live on one side and these other objects live on the other side, then you can have a granddaddy object on one side be an actor and it will parallelise as it goes across that boundary. Not too difficult. If we do get 1000-core desktop PCs, do you think actors will scale up? It’s hard. There are always in the order of twenty to fifty actors in my whole program because I tend to write each component as actors, and I tend to have one instance of each component. So this won’t scale to a thousand cores. What you can do is write data structures out of actors. I use dictionaries all over the place, and if you need a dictionary that is going to be accessed concurrently, then you could build one of those out of actors in no time. You can use queuing to marshal requests between different slices of the dictionary which are living on different threads. So it’s like a distributed hash table but all of the chunks of it are on the same machine. That means that each of these thousand processors has cached one small piece of the dictionary. I reckon it wouldn’t be too big a leap to start doing proper parallelism. Do you think it helps if actors get baked into the language, similarly to Erlang? Erlang is excellent in that it has thread-local garbage collection. C# doesn’t, so there’s a limit to how well C# actors can possibly scale because there’s a single garbage collected heap shared between all of them. When you do a global garbage collection, you’ve got to stop all of the actors, which is seriously expensive, whereas in Erlang garbage collections happen per-actor, so they’re insanely cheap. However, Erlang deviated from all the sensible language design that people have used recently and has just come up with crazy stuff. You can definitely retrofit thread-local garbage collection to .NET, and then it’s quite well-suited to support actors, even if it’s not baked into the language. Speaking of language design, do you have a favourite programming language? I’ll choose a language which I’ve never written before. I like the idea of Scala. It sounds like C#, only with some of the niggles gone. I enjoy writing static types. It means you don’t have to writing tests so much. When you say it doesn’t have some of the niggles? C# doesn’t allow the use of a property as a method group. It doesn’t have Scala case classes, or sum types, where you can do a switch statement and the compiler checks that you’ve checked all the cases, which is really useful in functional-style programming. Pattern-matching, in other words. That’s actually the major niggle. C# is pretty good, and I’m quite happy with C#. And what about going even further with the type system to remove the need for tests to something like Haskell? Or is that a step too far? I’m quite a pragmatist, I don’t think I could deal with trying to write big systems in languages with too few other users, especially when learning how to structure things. I just don’t know anyone who can teach me, and the Internet won’t teach me. That’s the main reason I wouldn’t use it. If I turned up at a company that writes big systems in Haskell, I would have no objection to that, but I wouldn’t instigate it. What about things in C#? For instance, there’s contracts in C#, so you can try to statically verify a bit more about your code. Do you think that’s useful, or just not worthwhile? I’ve not really tried it. My hunch is that it needs to be built into the language and be quite mathematical for it to work in real life, and that doesn’t seem to have ended up true for C# contracts. I don’t think anyone who’s tried them thinks they’re any good. I might be wrong. On a slightly different note, how do you like to debug code? I think I’m quite an odd debugger. I use guesswork extremely rarely, especially if something seems quite difficult to debug. I’ve been bitten spending hours and hours on guesswork and not being scientific about debugging in the past, so now I’m scientific to a fault. What I want is to see the bug happening in the debugger, to step through the bug happening. To watch the program going from a valid state to an invalid state. When there’s a bug and I can’t work out why it’s happening, I try to find some piece of evidence which places the bug in one section of the code. From that experiment, I binary chop on the possible causes of the bug. I suppose that means binary chopping on places in the code, or binary chopping on a stage through a processing cycle. Basically, I’m very stupid about how I debug. I won’t make any guesses, I won’t use any intuition, I will only identify the experiment that’s going to binary chop most effectively and repeat rather than trying to guess anything. I suppose it’s quite top-down. Is most of the time then spent in the debugger? Absolutely, if at all possible I will never debug using print statements or logs. I don’t really hold much stock in outputting logs. If there’s any bug which can be reproduced locally, I’d rather do it in the debugger than outputting logs. And with SmartAssembly error reporting, there’s not a lot that can’t be either observed in an error report and just fixed, or reproduced locally. And in those other situations, maybe I’ll use logs. But I hate using logs. You stare at the log, trying to guess what’s going on, and that’s exactly what I don’t like doing. You have to just look at it and see does this look right or wrong. We’ve covered how you get to grip with bugs. How do you get to grips with an entire codebase? I watch it in the debugger. I find little bugs and then try to fix them, and mostly do it by watching them in the debugger and gradually getting an understanding of how the code works using my process of binary chopping. I have to do a lot of reading and watching code to choose where my slicing-in-half experiment is going to be. The last time I did it was SmartAssembly. The old code was a complete mess, but at least it did things top to bottom. There wasn’t too much of some of the big abstractions where flow of control goes all over the place, into a base class and back again. Code’s really hard to understand when that happens. So I like to choose a little bug and try to fix it, and choose a bigger bug and try to fix it. Definitely learn by doing. I want to always have an aim so that I get a little achievement after every few hours of debugging. Once I’ve learnt the codebase I might be able to fix all the bugs in an hour, but I’d rather be using them as an aim while I’m learning the codebase. If I was a maintainer of a codebase, what should I do to make it as easy as possible for you to understand? Keep distinct concepts in different places. And name your stuff so that it’s obvious which concepts live there. You shouldn’t have some variable that gets set miles up the top of somewhere, and then is read miles down to choose some later behaviour. I’m talking from a very much SmartAssembly point of view because the old SmartAssembly codebase had tons and tons of these things, where it would read some property of the code and then deal with it later. Just thousands of variables in scope. Loads of things to think about. If you can keep concepts separate, then it aids me in my process of fixing bugs one at a time, because each bug is going to more or less be understandable in the one place where it is. And what about tests? Do you think they help at all? I’ve never had the opportunity to learn a codebase which has had tests, I don’t know what it’s like! What about when you’re actually developing? How useful do you find tests in finding bugs or regressions? Finding regressions, absolutely. Running bits of code that would be quite hard to run otherwise, definitely. It doesn’t happen very often that a test finds a bug in the first place. I don’t really buy nebulous promises like tests being a good way to think about the spec of the code. My thinking goes something like “This code works at the moment, great, ship it! Ah, there’s a way that this code doesn’t work. Okay, write a test, demonstrate that it doesn’t work, fix it, use the test to demonstrate that it’s now fixed, and keep the test for future regressions.” The most valuable tests are for bugs that have actually happened at some point, because bugs that have actually happened at some point, despite the fact that you think you’ve fixed them, are way more likely to appear again than new bugs are. Does that mean that when you write your code the first time, there are no tests? Often. The chance of there being a bug in a new feature is relatively unaffected by whether I’ve written a test for that new feature because I’m not good enough at writing tests to think of bugs that I would have written into the code. So not writing regression tests for all of your code hasn’t affected you too badly? There are different kinds of features. Some of them just always work, and are just not flaky, they just continue working whatever you throw at them. Maybe because the type-checker is particularly effective around them. Writing tests for those features which just tend to always work is a waste of time. And because it’s a waste of time I’ll tend to wait until a feature has demonstrated its flakiness by having bugs in it before I start trying to test it. You can get a feel for whether it’s going to be flaky code as you’re writing it. I try to write it to make it not flaky, but there are some things that are just inherently flaky. And very occasionally, I’ll think “this is going to be flaky” as I’m writing, and then maybe do a test, but not most of the time. How do you think your programming style has changed over time? I’ve got clearer about what the right way of doing things is. I used to flip-flop a lot between different ideas. Five years ago I came up with some really good ideas and some really terrible ideas. All of them seemed great when I thought of them, but they were quite diverse ideas, whereas now I have a smaller set of reliable ideas that are actually good for structuring code. So my code is probably more similar to itself than it used to be back in the day, when I was trying stuff out. I’ve got more disciplined about encapsulation, I think. There are operational things like I use actors more now than I used to, and that forces me to use immutability more than I used to. The first code that I wrote in Red Gate was the memory profiler UI, and that was an actor, I just didn’t know the name of it at the time. I don’t really use object-orientation. By object-orientation, I mean having n objects of the same type which are mutable. I want a constant number of objects that are mutable, and they should be different types. I stick stuff in dictionaries and then have one thing that owns the dictionary and puts stuff in and out of it. That’s definitely a pattern that I’ve seen recently. I think maybe I’m doing functional programming. Possibly. It’s plausible. If you had to summarise the essence of programming in a pithy sentence, how would you do it? Programming is the form of art that, without losing any of the beauty of architecture or fine art, allows you to produce things that people love and you make money from. So you think it’s an art rather than a science? It’s a little bit of engineering, a smidgeon of maths, but it’s not science. Like architecture, programming is on that boundary between art and engineering. If you want to do it really nicely, it’s mostly art. You can get away with doing architecture and programming entirely by having a good engineering mind, but you’re not going to produce anything nice. You’re not going to have joy doing it if you’re an engineering mind. Architects who are just engineering minds are not going to enjoy their job. I suppose engineering is the foundation on which you build the art. Exactly. How do you think programming is going to change over the next ten years? There will be an unfortunate shift towards dynamically-typed languages, because of JavaScript. JavaScript has an unfair advantage. JavaScript’s unfair advantage will cause more people to be exposed to dynamically-typed languages, which means other dynamically-typed languages crop up and the best features go into dynamically-typed languages. Then people conflate the good features with the fact that it’s dynamically-typed, and more investment goes into dynamically-typed languages. They end up better, so people use them. What about the idea of compiling other languages, possibly statically-typed, to JavaScript? It’s a reasonable idea. I would like to do it, but I don’t think enough people in the world are going to do it to make it pick up. The hordes of beginners are the lifeblood of a language community. They are what makes there be good tools and what makes there be vibrant community websites. And any particular thing which is the same as JavaScript only with extra stuff added to it, although it might be technically great, is not going to have the hordes of beginners. JavaScript is always to be quickest and easiest way for a beginner to start programming in the browser. And dynamically-typed languages are great for beginners. Compilers are pretty scary and beginners don’t write big code. And having your errors come up in the same place, whether they’re statically checkable errors or not, is quite nice for a beginner. If someone asked me to teach them some programming, I’d teach them JavaScript. If dynamically-typed languages are great for beginners, when do you think the benefits of static typing start to kick in? The value of having a statically typed program is in the tools that rely on the static types to produce a smooth IDE experience rather than actually telling me my compile errors. And only once you’re experienced enough a programmer that having a really smooth IDE experience makes a blind bit of difference, does static typing make a blind bit of difference. So it’s not really about size of codebase. If I go and write up a tiny program, I’m still going to get value out of writing it in C# using ReSharper because I’m experienced with C# and ReSharper enough to be able to write code five times faster if I have that help. Any other visions of the future? Nobody’s going to use actors. Because everyone’s going to be running on single-core VMs connected over network-ready protocols like JSON over HTTP. So, parallelism within one operating system is going to die. But until then, you should use actors. More Red Gater Coder interviews

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  • Unlocking Productivity

    - by Michael Snow
    Unlocking Productivity in Life Sciences with Consolidated Content Management by Joe Golemba, Vice President, Product Management, Oracle WebCenter As life sciences organizations look to become more operationally efficient, the ability to effectively leverage information is a competitive advantage. Whether data mining at the drug discovery phase or prepping the sales team before a product launch, content management can play a key role in developing, organizing, and disseminating vital information. The goal of content management is relatively straightforward: put the information that people need where they can find it. A number of issues can complicate this; information sits in many different systems, each of those systems has its own security, and the information in those systems exists in many different formats. Identifying and extracting pertinent information from mountains of farflung data is no simple job, but the alternative—wasted effort or even regulatory compliance issues—is worse. An integrated information architecture can enable health sciences organizations to make better decisions, accelerate clinical operations, and be more competitive. Unstructured data matters Often when we think of drug development data, we think of structured data that fits neatly into one or more research databases. But structured data is often directly supported by unstructured data such as experimental protocols, reaction conditions, lot numbers, run times, analyses, and research notes. As life sciences companies seek integrated views of data, they are typically finding diverse islands of data that seemingly have no relationship to other data in the organization. Information like sales reports or call center reports can be locked into siloed systems, and unavailable to the discovery process. Additionally, in the increasingly networked clinical environment, Web pages, instant messages, videos, scientific imaging, sales and marketing data, collaborative workspaces, and predictive modeling data are likely to be present within an organization, and each source potentially possesses information that can help to better inform specific efforts. Historically, content management solutions that had 21CFR Part 11 capabilities—electronic records and signatures—were focused mainly on content-enabling manufacturing-related processes. Today, life sciences companies have many standalone repositories, requiring different skills, service level agreements, and vendor support costs to manage them. With the amount of content doubling every three to six months, companies have recognized the need to manage unstructured content from the beginning, in order to increase employee productivity and operational efficiency. Using scalable and secure enterprise content management (ECM) solutions, organizations can better manage their unstructured content. These solutions can also be integrated with enterprise resource planning (ERP) systems or research systems, making content available immediately, in the context of the application and within the flow of the employee’s typical business activity. Administrative safeguards—such as content de-duplication—can also be applied within ECM systems, so documents are never recreated, eliminating redundant efforts, ensuring one source of truth, and maintaining content standards in the organization. Putting it in context Consolidating structured and unstructured information in a single system can greatly simplify access to relevant information when it is needed through contextual search. Using contextual filters, results can include therapeutic area, position in the value chain, semantic commonalities, technology-specific factors, specific researchers involved, or potential business impact. The use of taxonomies is essential to organizing information and enabling contextual searches. Taxonomy solutions are composed of a hierarchical tree that defines the relationship between different life science terms. When overlaid with additional indexing related to research and/or business processes, it becomes possible to effectively narrow down the amount of data that is returned during searches, as well as prioritize results based on specific criteria and/or prior search history. Thus, search results are more accurate and relevant to an employee’s day-to-day work. For example, a search for the word "tissue" by a lab researcher would return significantly different results than a search for the same word performed by someone in procurement. Of course, diverse data repositories, combined with the immense amounts of data present in an organization, necessitate that the data elements be regularly indexed and cached beforehand to enable reasonable search response times. In its simplest form, indexing of a single, consolidated data warehouse can be expected to be a relatively straightforward effort. However, organizations require the ability to index multiple data repositories, enabling a single search to reference multiple data sources and provide an integrated results listing. Security and compliance Beyond yielding efficiencies and supporting new insight, an enterprise search environment can support important security considerations as well as compliance initiatives. For example, the systems enable organizations to retain the relevance and the security of the indexed systems, so users can only see the results to which they are granted access. This is especially important as life sciences companies are working in an increasingly networked environment and need to provide secure, role-based access to information across multiple partners. Although not officially required by the 21 CFR Part 11 regulation, the U.S. Food and Drug Administraiton has begun to extend the type of content considered when performing relevant audits and discoveries. Having an ECM infrastructure that provides centralized management of all content enterprise-wide—with the ability to consistently apply records and retention policies along with the appropriate controls, validations, audit trails, and electronic signatures—is becoming increasingly critical for life sciences companies. Making the move Creating an enterprise-wide ECM environment requires moving large amounts of content into a single enterprise repository, a daunting and risk-laden initiative. The first key is to focus on data taxonomy, allowing content to be mapped across systems. The second is to take advantage new tools which can dramatically speed and reduce the cost of the data migration process through automation. Additional content need not be frozen while it is migrated, enabling productivity throughout the process. The ability to effectively leverage information into success has been gaining importance in the life sciences industry for years. The rapid adoption of enterprise content management, both in operational processes as well as in scientific management, are clear indicators that the companies are looking to use all available data to be better informed, improve decision making, minimize risk, and increase time to market, to maintain profitability and be more competitive. As more and more varieties and sources of information are brought under the strategic management umbrella, the ability to divine knowledge from the vast pool of information is increasingly difficult. Simple search engines and basic content management are increasingly unable to effectively extract the right information from the mountains of data available. By bringing these tools into context and integrating them with business processes and applications, we can effectively focus on the right decisions that make our organizations more profitable. More Information Oracle will be exhibiting at DIA 2012 in Philadelphia on June 25-27. Stop by our booth Normal 0 false false false EN-US X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin:0in; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} (#2825) to learn more about the advantages of a centralized ECM strategy and see the Oracle WebCenter Content solution, our 21 CFR Part 11 compliant content management platform.

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  • How to disable SSLCompression on Apache httpd 2.2.15?

    - by Stefan Lasiewski
    I read about the CRIME attack against TLS Compression (CRIME is a successor to the BEAST attack against ssl & tls), and I want to protect my webservers against this attack by disabling SSL Compression, which was added to Apache 2.2.22 (See Bug 53219). I am running Scientific Linux 6.1, which ships with httpd-2.2.15. Security fixes for upstream versions of httpd 2.2 should be backported to this version. # rpm -q httpd httpd-2.2.15-15.sl6.1.x86_64 # httpd -V Server version: Apache/2.2.15 (Unix) Server built: Feb 14 2012 09:47:14 Server's Module Magic Number: 20051115:24 Server loaded: APR 1.3.9, APR-Util 1.3.9 Compiled using: APR 1.3.9, APR-Util 1.3.9 I tried SSLCompression off in my configuration, but that results in the following error message: # /etc/init.d/httpd restart Stopping httpd: [ OK ] Starting httpd: Syntax error on line 147 of /etc/httpd/httpd.conf: Invalid command 'SSLCompression', perhaps misspelled or defined by a module not included in the server configuration [FAILED] Is it possible to disable SSLCompression with this version of Apache Webserver?

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  • Gnu/Linux package manager, multiple versions, no root privilege

    - by user744629
    I'm looking for a Gnu/Linux package manager, that can help to package, distribute, install sofware (actually scientific libraries), like this: do not required root privilege, for example, install in $HOME/opt or $HOME/local manage muliple version of a library, for example, with this directories organisation: $HOME/opt/somelib/4.2.1/lib/ $HOME/opt/somelib/4.2.1/include/ $HOME/opt/somelib/4.2.1/bin/ $HOME/opt/somelib/4.2.2/lib/ $HOME/opt/somelib/4.2.2/include/ $HOME/opt/somelib/4.2.2/bin/ $HOME/opt/anotherlib/1.0.0/lib/ $HOME/opt/anotherlib/1.0.0/include/ $HOME/opt/anotherlib/1.0.0/bin/ package contains source files, not binaries, build is performed during install. support for Mac OS X too would be good. Then it's up to the user to manage it's LD_LIBRARY_PATH, or compile with -L/good/path etc. Does it exists?

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  • Why does cd print when run in command substitution?

    - by reasgt
    If I use the 'cd' BASH built-in in a command substitution, it prints extra stuff to stdout, but only when piped to, eg., less. $ echo `cd .` # The output is a single newline, appended by echo. $ echo `cd .` | less # less displays: ESC]2;my.hostname.com - tmp/testenv^G (END) What's going on there? This behavior isn't documented in the bash man page for cd. Obviously, running just 'cd' in a command substitution is silly, but something like NEWDIR=`cd mypath; pwd` could be useful. I solved this by instead using NEWVAR=`cd mypath > /dev/null 2>&1; pwd` but I still want to know what's going on. Bash Version: GNU bash, version 3.2.25(1)-release (x86_64-redhat-linux-gnu) Copyright (C) 2005 Free Software Foundation, Inc. Distro: Scientific Linux SL release 5.5 (Boron)

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  • Missing eth0 configuration file

    - by Godric Seer
    I have two servers both running Scientific Linux 6 on the same network. Since I want SSH access to both of them, I want to give them both static IPs so I can setup port forwarding and not worry how my router assigns local IPs. I found that I need to edit the configuration file /etc/network-scripts/ifcng-eth0, however that file does not exist. The network card works fine, and I am able to ssh as long as I access the router and find the local ip. Can I simply make my own configuration file, or did I miss some step in configuring the system that I need to complete?

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  • which NoSQL for billions of records [closed]

    - by airtruk
    There are plenty of discussions around NoSQL databases around and a lot of them are about data logging in the social media section. The problem I'm trying to solve falls more into the scientific computing section, where I have several 1000s of billions of pieces of information that I want to query with different a different criteria for each query. All data is at least a 4 dimensional space, which means I have a 3D location (x,y,z) and a time component - plus the value and unit. Say temperature at xyz and 10min in degree Celcius. A typical query result may contain several million results ... I have read about pretty much all NoSQL solutions being exceptionally fast for inserting records, but when it comes to querying them it's a different story. I'm leaning towards MongoDB for the implementation and platform for developing the necessary code since it is more closely related to the current solution using MySQL. Happy to be proven wrong though when it comes to the choice of the NoSQL solution.

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  • wireless network with cable modem and access point

    - by hayri
    I have a Scientific Atlanta EPC2203 cable modem and a TP-Link TL-WA500G access point. When I connect my computer directly to modem with a CAT5e cable I have internet connection on my laptop (when i type ipconfig i see my external ip there, provided by isp). So I decided to have wireless network in the flat, allowing other devices to connect as well. I bought this wireless ap (TL-WA500G) configured Wireless security stuff, and connected it to my modem. With that configuration (by default AP has static ip of 192.168.1.254) only my computer can connect to internet over wifi, but not any other device. When I set the IP of AP to Dynamic IP (DHCP) it is the same. How should I change my configuration to enable all wifi devices to connect to internet?

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  • Silent and scripted install of CPAN and Perl modules?

    - by Mikael Grönfelt
    I need to install CPAN and some Perl modules automatically in a Scientific Linux (RHEL) installation script. Unfortunately the specific modules I want (at least one of them) cannot be found as RPM:s as far as I've seen. So I need to install CPAN, configure it automatically (or with a config file) and then install the wanted modules (including dependencies) automatically as well. This doesn't seem like a very unusual requirement, but I haven't seen any really good documentation on this. The problem is that whenever CPAN is launched for the first time an interactive configuration runs. Can this be skipped somehow? And how do I launch module installations directly from the command line?

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  • Keyboard layout for mathematical/Greek symbols

    - by David
    I've been wondering about this for a long time but never thought to ask: I do a lot of scientific work so there are many times it would be really handy to be able to type mathematical symbols or Greek letters which, for the most part, aren't part of the ASCII character set. Like "8 µ ? s t ? ? … v ? = = ±" and so on. Is there a keyboard layout (for Linux) that maps simple key combinations to these kinds of characters? (Assuming all the encoding and font issues are worked out properly) I know I could create one myself but it'd be a lot easier if someone's already done the work, or at least if there's a partial solution I could modify.

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  • What does the arxiv.org anti-bot "search and destroy" actually do?

    - by Brian Campbell
    The lanl.arxiv.org math and scientific preprint service (formerly known as xxx.lanl.gov) has a strict policy against bots that ignore its robots.txt, Robots Beware. On that page, the have a link labelled with "Click here to initiate automated 'seek-and-destroy' against your site", which is forbidden by their robots.txt but presumably badly behaved robots will follow it, and reap the consequences. The question, what are the actual consequences? I have never had the guts to actually click on that link to see what it does. What can they be doing that is both effective and legal?

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  • Encoding video stream for playback on a vanilla Windows XP with mencoder

    - by Tamás
    I have a bunch of PNG files, generated from a script. They represent consecutive frames of a video sequence and I'd like to encode them into a single AVI file (or some other video format) using mencoder. What parameters should I use to ensure that the video can be viewed on a vanilla Windows XP using Windows Media Player with no extra codecs installed apart from the default ones? So far I've tried -ovc lavc -lavcopts vcodec=wmv2 and -ovc lavc -lavcopts vcodec=msmpeg4 with no success. (Background story: some of the people I'm collaborating with on a scientific project cannot install any codecs on their university computers without the help of the local sysadmins, who are of course not very willing to install anything. I'd like to ensure that they can also view the video files I am creating).

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  • HPC Cluster planning workflow?

    - by Veronica
    After three days of intensive Google searching, I have not found any high-level workflow of how to build a low profile - cheap - computing cluster (we are not interested in HA yet). This is just a front-end plus a node for now. We want to start small with rockscluster, provide a web-based server for offering services, and then add nodes as our budget increases. We're small company, so we haven't enough human resources to implement it smoothly. Here are some facts about our environment: Our hardware is not constant (we will add nodes). Our workload will vary (in the order from 200Mb - 1Tb) Our software will change (scientific applications for data mining) Do you know any visual workflow, worksheet, chart, describing the general necessary steps to begin our cluster planning?

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  • Weather Logging Software on Windows Home Server

    - by Cruiser
    I'm looking for some weather logging software that I can run as a Windows Home Server add-in, or as a service on my Home Server, so I don't need to log into my Home Server to log weather data. I have an Oregon Scientific WMR918 weather station, and an HP MediaSmart EX485 Windows Home Server. The two are currently connected through a serial bluetooth adapter, but that shouldn't matter as the computer sees it basically as a serial device. I'm currently using Cumulus to log data and upload to Weather Underground, but it is a regular windows application, so I need to remain logged into my Home Server by RDP in order to run the software (I disconnect, but don't log off so the session remains open). Ideally I would like something to run as a service or WHS add-in, so that it runs all the time without logging in, can log data from my WMR918, and can upload to Weather Underground. Thanks!

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  • How to set Firefox to be "silent"? [closed]

    - by LanceBaynes
    Possible Duplicate: Turn off Mozilla Firefox warning that there are new Firefox add-ons Firefox sometimes pops-up stating that there are updates for it, or an Add-on has been updated, etc. How can make Firefox silent, so that it will only update itself/add-ons in the background, and doesn't pops-up with a message??*1 in the "about:config" app.update.silent;false setting this to true? what does it do? *1 = because non-IT people will use PCs, and they don't know what to do, when a message pops up.. p.s.: Firefox 3.6/Scientific Linux

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  • My computer gets hosted when using 3G

    - by WeaklyTyped
    I recently activated 3G(UMTS) connection on my cellular network. I use Nokia S60 phone as a modem while connecting from Scientific Linux 6. While I am able to access net pretty well, the problem is my computer gets hosted. By using ip-address in a web-browser, anyone can access my localhost (running apache), this never happens with my wireline (ADSL) connection. Furthermore, even the Shell prompt changes from: [mach2@localhost ~]$ to [[email protected] ~]$ where XX.XX.XX.XX is the IP of the 3G connection. The very thought of putting my machine 'in the wild' is disconcerting. How can I rectify the situation without disabling services like apache, sshd and others?

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