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  • Can anyone tell me why these lines are not working?

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO_init_.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • unix shell, redirect output but keep on stdin

    - by Mike
    I'd like to have a shell script redirect stdout of a child process in the following manner Redirect stdout to a file Display the output of the process in real time I know I could do something like #!/bin/sh ./child > file cat file But that would not display stdout in real time. For instance, if the child was #!/bin/sh echo 1 sleep 1 echo 2 The user would see "1" and "2" printed at the same time

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  • How to integrate an open source C program instead of calling its executable through a system call?

    - by ihamer
    I have an executable (fossil scm) that is being invoked by my program externally through ::CreateProcess windows call. The stdout and stderr are then captured. Since the source code for fossil is available, I would prefer to create a static library out of it and issue calls directly. Currently, communication to fossil is done through the command line parameters, and the communication back is through the process return code, stdout and stderr. Fossil writes to stdout/err through printf and fprintf calls. What is the best way to solve this with minimum alteration of fossil source? Is there a reliable and cross-platform way to intercept stdout/err and send it into a memory buffer?

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  • How do I redirect standard output to a file in Perl? [closed]

    - by rockyurock
    I want to send standard output to the file "my_output.txt" but failed. Here's the output: inside value loop ------------------------------------------------------------ Server listening on UDP port 5001 Receiving 1470 byte datagrams UDP buffer size: 108 KByte (default) ------------------------------------------------------------ [ 3] local 192.168.16.2 port 5001 connected with 192.168.16.1 port 3189 [ ID] Interval Transfer Bandwidth Jitter Lost/Total Datagrams [ 3] 0.0- 5.0 sec 2.14 MBytes 3.61 Mbits/sec 0.369 ms 0/ 1528 (0%) inside value loop3 clue1 clue2 inside value loop4 one iperf completed *************************************** When I enable the local *STDOUT; in below code then I could see the above output on command prompt display (ofcourse server is sending some data): my $file = 'my_output.txt'; use Win32::Process; print"inside value loop\n"; # redirect stdout to a file #local *STDOUT; open STDOUT, '>', $file or die "can't redirect STDOUT to <$file> $!"; Win32::Process::Create(my $ProcessObj, "D:\\IOT_AUTOMATION_UTILITY\\_SATURDAY_09-04-10\\adb_cmd.bat", "adb shell /data/app/iperf -u -s -p 5001", 0, NORMAL_PRIORITY_CLASS, ".") || die ErrorReport(); #$alarm_time = $IPERF_RUN_TIME+10; #20sec #$ProcessObj->Wait(40); #print"inside value loop2\n"; #sleep $alarm_time; sleep 40; $ProcessObj->Kill(0); sub ErrorReport{ print Win32::FormatMessage( Win32::GetLastError() ); }

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  • convert Ruby to C languge

    - by alaamh
    I have seen this sample written in Ruby code, how i can simulate it in C language? Open3.popen3(command) do |stdin, stdout, stderr| @stop_stdin = stdin while !stdout.eof do output = stdout.read(1024 * 100) list_pipes.each do |out| out.print output end end end

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  • Interface Builder error: IBXMLDecoder: The value for key is too large to fit into a 32 bit integer

    - by stdout
    I'm working with Robert Payne's fork of PSMTabBarControl that works with IB 3.2 (thanks BTW Robert!): http://codaset.com/robertjpayne/psmtabbarcontrol/. The demo application works fine on 64-bit systems, but when I try to open the XIB file in Interface Builder on a 32-bit system I get: IBXMLDecoder: The value (4654500848) for key (myTrackingRectTag) is too large to fit into a 32 bit integer Building the app as 32 bit works, but then running it gives: PSMTabBarControlDemo[9073:80f] * -[NSKeyedUnarchiver decodeInt32ForKey:]: value (4654500848) for key (myTrackingRectTag) too large to fit in 32-bit integer Not sure if this is a generic IB issue that can occur when moving between 64 and 32 bit systems, or if this is a more specific issue with this code. Has anyone else run into this?

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  • Error when reloading supervisord: unix:///tmp/supervisor.sock no such file

    - by Yarin
    I'm running supervisord on my CentOS 6 box like so, /usr/bin/supervisord -c /etc/supervisord.conf and when I launch supervisorctl all process status are fine, but if I try to reload using supervisorctl I get unix:///tmp/supervisor.sock no such file I'm using the same config file I've used successfully on other boxes, and im running everything as root. I can't undesrtand what the problem is... Config file: ; Sample supervisor config file. [unix_http_server] file=/tmp/supervisor.sock ; (the path to the socket file) ;chmod=0700 ; socket file mode (default 0700) ;chown=nobody:nogroup ; socket file uid:gid owner ;username=user ; (default is no username (open server)) ;password=123 ; (default is no password (open server)) ;[inet_http_server] ; inet (TCP) server disabled by default ;port=127.0.0.1:9001 ; (ip_address:port specifier, *:port for all iface) ;username=user ; (default is no username (open server)) ;password=123 ; (default is no password (open server)) [supervisord] logfile=/tmp/supervisord.log ; (main log file;default $CWD/supervisord.log) logfile_maxbytes=50MB ; (max main logfile bytes b4 rotation;default 50MB) logfile_backups=10 ; (num of main logfile rotation backups;default 10) loglevel=info ; (log level;default info; others: debug,warn,trace) pidfile=/tmp/supervisord.pid ; (supervisord pidfile;default supervisord.pid) nodaemon=false ; (start in foreground if true;default false) minfds=1024 ; (min. avail startup file descriptors;default 1024) minprocs=200 ; (min. avail process descriptors;default 200) ;umask=022 ; (process file creation umask;default 022) ;user=chrism ; (default is current user, required if root) ;identifier=supervisor ; (supervisord identifier, default is 'supervisor') ;directory=/tmp ; (default is not to cd during start) ;nocleanup=true ; (don't clean up tempfiles at start;default false) ;childlogdir=/tmp ; ('AUTO' child log dir, default $TEMP) ;environment=KEY=value ; (key value pairs to add to environment) ;strip_ansi=false ; (strip ansi escape codes in logs; def. false) ; the below section must remain in the config file for RPC ; (supervisorctl/web interface) to work, additional interfaces may be ; added by defining them in separate rpcinterface: sections [rpcinterface:supervisor] supervisor.rpcinterface_factory = supervisor.rpcinterface:make_main_rpcinterface [supervisorctl] serverurl=unix:///tmp/supervisor.sock ; use a unix:// URL for a unix socket ;serverurl=http://127.0.0.1:9001 ; use an http:// url to specify an inet socket ;username=chris ; should be same as http_username if set ;password=123 ; should be same as http_password if set ;prompt=mysupervisor ; cmd line prompt (default "supervisor") ;history_file=~/.sc_history ; use readline history if available ; The below sample program section shows all possible program subsection values, ; create one or more 'real' program: sections to be able to control them under ; supervisor. ;[program:foo] ;command=/bin/cat [program:embed_scheduler] command=/opt/web-apps/mywebsite/custom_process.py process_name=%(program_name)s_%(process_num)d numprocs=3 ;[program:theprogramname] ;command=/bin/cat ; the program (relative uses PATH, can take args) ;process_name=%(program_name)s ; process_name expr (default %(program_name)s) ;numprocs=1 ; number of processes copies to start (def 1) ;directory=/tmp ; directory to cwd to before exec (def no cwd) ;umask=022 ; umask for process (default None) ;priority=999 ; the relative start priority (default 999) ;autostart=true ; start at supervisord start (default: true) ;autorestart=unexpected ; whether/when to restart (default: unexpected) ;startsecs=1 ; number of secs prog must stay running (def. 1) ;startretries=3 ; max # of serial start failures (default 3) ;exitcodes=0,2 ; 'expected' exit codes for process (default 0,2) ;stopsignal=QUIT ; signal used to kill process (default TERM) ;stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) ;killasgroup=false ; SIGKILL the UNIX process group (def false) ;user=chrism ; setuid to this UNIX account to run the program ;redirect_stderr=true ; redirect proc stderr to stdout (default false) ;stdout_logfile=/a/path ; stdout log path, NONE for none; default AUTO ;stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) ;stdout_logfile_backups=10 ; # of stdout logfile backups (default 10) ;stdout_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) ;stdout_events_enabled=false ; emit events on stdout writes (default false) ;stderr_logfile=/a/path ; stderr log path, NONE for none; default AUTO ;stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) ;stderr_logfile_backups=10 ; # of stderr logfile backups (default 10) ;stderr_capture_maxbytes=1MB ; number of bytes in 'capturemode' (default 0) ;stderr_events_enabled=false ; emit events on stderr writes (default false) ;environment=A=1,B=2 ; process environment additions (def no adds) ;serverurl=AUTO ; override serverurl computation (childutils) ; The below sample eventlistener section shows all possible ; eventlistener subsection values, create one or more 'real' ; eventlistener: sections to be able to handle event notifications ; sent by supervisor. ;[eventlistener:theeventlistenername] ;command=/bin/eventlistener ; the program (relative uses PATH, can take args) ;process_name=%(program_name)s ; process_name expr (default %(program_name)s) ;numprocs=1 ; number of processes copies to start (def 1) ;events=EVENT ; event notif. types to subscribe to (req'd) ;buffer_size=10 ; event buffer queue size (default 10) ;directory=/tmp ; directory to cwd to before exec (def no cwd) ;umask=022 ; umask for process (default None) ;priority=-1 ; the relative start priority (default -1) ;autostart=true ; start at supervisord start (default: true) ;autorestart=unexpected ; whether/when to restart (default: unexpected) ;startsecs=1 ; number of secs prog must stay running (def. 1) ;startretries=3 ; max # of serial start failures (default 3) ;exitcodes=0,2 ; 'expected' exit codes for process (default 0,2) ;stopsignal=QUIT ; signal used to kill process (default TERM) ;stopwaitsecs=10 ; max num secs to wait b4 SIGKILL (default 10) ;killasgroup=false ; SIGKILL the UNIX process group (def false) ;user=chrism ; setuid to this UNIX account to run the program ;redirect_stderr=true ; redirect proc stderr to stdout (default false) ;stdout_logfile=/a/path ; stdout log path, NONE for none; default AUTO ;stdout_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) ;stdout_logfile_backups=10 ; # of stdout logfile backups (default 10) ;stdout_events_enabled=false ; emit events on stdout writes (default false) ;stderr_logfile=/a/path ; stderr log path, NONE for none; default AUTO ;stderr_logfile_maxbytes=1MB ; max # logfile bytes b4 rotation (default 50MB) ;stderr_logfile_backups ; # of stderr logfile backups (default 10) ;stderr_events_enabled=false ; emit events on stderr writes (default false) ;environment=A=1,B=2 ; process environment additions ;serverurl=AUTO ; override serverurl computation (childutils) ; The below sample group section shows all possible group values, ; create one or more 'real' group: sections to create "heterogeneous" ; process groups. ;[group:thegroupname] ;programs=progname1,progname2 ; each refers to 'x' in [program:x] definitions ;priority=999 ; the relative start priority (default 999) ; The [include] section can just contain the "files" setting. This ; setting can list multiple files (separated by whitespace or ; newlines). It can also contain wildcards. The filenames are ; interpreted as relative to this file. Included files *cannot* ; include files themselves. ;[include] ;files = relative/directory/*.ini

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  • Is this right in the use case of exec method of child_process? is there away to cody the envirorment along with the require module too?

    - by L2L2L
    I'm learning node. I am using child_process to move data to another script to be executed. But it seem that it does not copy the hold environment or I could be doing something wrong. To copy the hold environment --require modules too-- or is this when I use spawn, I'm not so clear or understanding spawn exec and execfile --although execfile is like what I'm doing at the bottom, but with exec... right?-- And I would just love to have some clarity on this matter. Please anyone? Thank you. parent.js - "use strict"; var fs, path, _err; fs = require("fs"), path = require("path"), _err = require("./err.js"); var url; url= process.argv[1]; var dirname, locate_r; dirname = path.dirname(url); locate_r = dirname + "/" + "test.json";//path.join(dirname,"/", "test.json"); var flag, str; flag = "r", str = ""; fs.open(locate_r, flag, function opd(error, fd){ if (error){_err(error, function(){ fs.close(fd,function(){ process.stderr.write("\n" + "In Finally Block: File Closed!" + "\n");});})} var readBuff, buffOffset, buffLength, filePos; readBuff = new Buffer(15), buffOffset = 0, buffLength = readBuff.length, filePos = 0; fs.read(fd, readBuff, buffOffset, buffLength, filePos, function rd(error, readBytes){ error&&_err(error, fd); str = readBuff.toString("utf8"); process.env.str = str; process.stdout.write("str: "+ str + "\n" + "readBuff: " + readBuff + "\n"); fs.close(fd, function(){process.stdout.write( "Read and Closed File." + "\n" )}); //write(str); //run test for process.exec** var env, varName, envCopy, exec; env = process.env, varName, envCopy = {}, exec = require("child_process").exec; for(varName in env){ envCopy[varName] = env[varName]; } process.env.fs = fs, process.env.path = path, process.env.dirname = dirname, process.env.flag = flag, process.env.str = str, process.env._err = _err; process.env.fd = fd; exec("node child.js", env, function(error, stdout, stderr){ if(error){throw (new Error(error));} }); }); }); child.js - "use strict"; var fs, path, _err; fs = require("fs"), path = require("path"), _err = require("./err.js"); var fd, fs, flag, path, dirname, str, _err; fd = process.env.fd, //fs = process.env.fs, //path = process.env.path, dirname = process.env.dirname, flag = process.env.flag, str = process.env.str, _err = process.env._err; var url; url= process.argv[1]; var locate_r; dirname = path.dirname(url); locate_r = dirname + "/" + "test.json";//path.join(dirname,"/", "test.json"); //function write(str){ var locate_a; locate_a = dirname + "/" + "test.json"; //path.join(dirname,"/", "test.json"); flag = "a"; fs.open(locate_a, flag, function opd(error, fd){ error&&_err(error, fs, fd); var writeBuff, buffPos, buffLgh, filePs; writeBuff = new Buffer(str), process.stdout.write( "writeBuff: " + writeBuff + "\n" + "str: " + str + "\n"), buffPos = 0, buffLgh = writeBuff.length, filePs = buffLgh;//null; fs.write(fd, writeBuff, buffPos, buffLgh, filePs-3, function(error, written){ error&&_err(error, function(){ fs.close(fd,function(){ process.stderr.write("\n" + "In Finally Block: File Closed!" + "\n"); }); }); fs.close(fd, function(){process.stdout.write( "Written and Closed File." + "\n");}); }); }); //} err.js - "use strict"; var fs; fs = require("fs"); module.exports = function _err(err, scp, cd){ try{ throw (new Error(err)); }catch(e){ process.stderr.write(e + "\n"); }finally{ cd; } }

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  • Using local repository with vmbuilder and https

    - by Onitlikesonic
    I seem to be having problems using vmbuilder with a local https mirror "--mirror=https:///archive.ubuntu.com/ubuntu/" as shown below: Process (['/usr/sbin/debootstrap', '--arch=amd64', 'precise', '/tmp/tmpYc0cOktmpfs', '<my_internal_server>/ubuntu/']) returned 1. stdout: I: Retrieving Release E: Failed getting release file <my_internal_server>/ubuntu/dists/precise/Release , stderr: 2012-10-18 10:36:36,429 INFO : Unmounting tmpfs from /tmp/tmpYc0cOktmpfs Traceback (most recent call last): File "/usr/bin/vmbuilder", line 24, in <module> cli.main() File "/usr/lib/python2.7/dist-packages/VMBuilder/contrib/cli.py", line 216, in main distro.build_chroot() File "/usr/lib/python2.7/dist-packages/VMBuilder/distro.py", line 83, in build_chroot self.call_hooks('bootstrap') File "/usr/lib/python2.7/dist-packages/VMBuilder/distro.py", line 67, in call_hooks call_hooks(self, *args, **kwargs) File "/usr/lib/python2.7/dist-packages/VMBuilder/util.py", line 165, in call_hooks getattr(context, func, log_no_such_method)(*args, **kwargs) File "/usr/lib/python2.7/dist-packages/VMBuilder/plugins/ubuntu/distro.py", line 136, in bootstrap self.suite.debootstrap() File "/usr/lib/python2.7/dist-packages/VMBuilder/plugins/ubuntu/dapper.py", line 269, in debootstrap run_cmd(*cmd, **kwargs) File "/usr/lib/python2.7/dist-packages/VMBuilder/util.py", line 120, in run_cmd raise VMBuilderException, "Process (%s) returned %d. stdout: %s, stderr: %s" % (args.__repr__(), status, mystdout.buf, mystderr.buf) VMBuilder.exception.VMBuilderException: Process (['/usr/sbin/debootstrap', '--arch=amd64', 'precise', '/tmp/tmpYc0cOktmpfs', '<my_internal_server>/ubuntu/']) returned 1. stdout: I: Retrieving Release E: Failed getting release file <my_internal_server>/ubuntu/dists/precise/Release , stderr: I've checked that the files are in the correct place and i'm able to setup this using http instead of https. However this server will be providing https access only to the repos, the http is only temporarily open. This might be due to the certificate not being valid on the https (since it's self signed) or due to the fact that vmbuilder doesn't support https? In either case how can i get this to work? (If it's the case of the invalid certificate I don't mind ignoring any checks)

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  • Pipe an infinite stream to internal loop?

    - by Sh3ljohn
    I've seen a lot of things about redirecting stdout to a TCP socket, but no real example of how to do it in practice, specifically when the output stream generated by the first "command" never ends. To talk about something concrete, let's take programs like servers that typically output their log endlessly to stdout (well, as long as they run). If you redirect the output to a log file on the disk, then this file is always open (therefore not readable by others?) and grows infinitely, which eventually is going to cause problems. This might be a nood question, but I don't know what it does or how to do it so. How to redirect the output of a command to the internal loop? I want to make sure that data is sent EVERY time something is written to stdout, and that the pipe won't wait for the command to end (never happens ideally!). Is that right? If 2 is true, is there a buffer system to send chunks of data once it reaches a certain size only? Could you give me concrete command line examples to do the above? Thanks in advance

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  • How to replace openSSL calls with C# code?

    - by fonix232
    Hey there again! Today I ran into a problem when I was making a new theme creator for chrome. As you may know, Chrome uses a "new" file format, called CRX, to manage it's plugins and themes. It is a basic zip file, but a bit modified: "Cr24" + derkey + signature + zipFile And here comes the problem. There are only two CRX creators, written in Ruby or Python. I don't know neither language too much (had some basic experience in Python though, but mostly with PyS60), so I would like to ask you to help me convert this python app to a C# code that doesn't depend on external programs. Also, here is the source of crxmake.py: #!/usr/bin/python # Cribbed from http://github.com/Constellation/crxmake/blob/master/lib/crxmake.rb # and http://src.chromium.org/viewvc/chrome/trunk/src/chrome/tools/extensions/chromium_extension.py?revision=14872&content-type=text/plain&pathrev=14872 # from: http://grack.com/blog/2009/11/09/packing-chrome-extensions-in-python/ import sys from array import * from subprocess import * import os import tempfile def main(argv): arg0,dir,key,output = argv # zip up the directory input = dir + ".zip" if not os.path.exists(input): os.system("cd %(dir)s; zip -r ../%(input)s . -x '.svn/*'" % locals()) else: print "'%s' already exists using it" % input # Sign the zip file with the private key in PEM format signature = Popen(["openssl", "sha1", "-sign", key, input], stdout=PIPE).stdout.read(); # Convert the PEM key to DER (and extract the public form) for inclusion in the CRX header derkey = Popen(["openssl", "rsa", "-pubout", "-inform", "PEM", "-outform", "DER", "-in", key], stdout=PIPE).stdout.read(); out=open(output, "wb"); out.write("Cr24") # Extension file magic number header = array("l"); header.append(2); # Version 2 header.append(len(derkey)); header.append(len(signature)); header.tofile(out); out.write(derkey) out.write(signature) out.write(open(input).read()) os.unlink(input) print "Done." if __name__ == '__main__': main(sys.argv) Please could you help me?

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  • Python to C# with openSSL requirement

    - by fonix232
    Hey there again! Today I ran into a problem when I was making a new theme creator for chrome. As you may know, Chrome uses a "new" file format, called CRX, to manage it's plugins and themes. It is a basic zip file, but a bit modified: "Cr24" + derkey + signature + zipFile And here comes the problem. There are only two CRX creators, written in Ruby or Python. I don't know neither language too much (had some basic experience in Python though, but mostly with PyS60), so I would like to ask you to help me convert this python app to a C# class. Also, here is the source of crxmake.py: #!/usr/bin/python # Cribbed from http://github.com/Constellation/crxmake/blob/master/lib/crxmake.rb # and http://src.chromium.org/viewvc/chrome/trunk/src/chrome/tools/extensions/chromium_extension.py?revision=14872&content-type=text/plain&pathrev=14872 # from: http://grack.com/blog/2009/11/09/packing-chrome-extensions-in-python/ import sys from array import * from subprocess import * import os import tempfile def main(argv): arg0,dir,key,output = argv # zip up the directory input = dir + ".zip" if not os.path.exists(input): os.system("cd %(dir)s; zip -r ../%(input)s . -x '.svn/*'" % locals()) else: print "'%s' already exists using it" % input # Sign the zip file with the private key in PEM format signature = Popen(["openssl", "sha1", "-sign", key, input], stdout=PIPE).stdout.read(); # Convert the PEM key to DER (and extract the public form) for inclusion in the CRX header derkey = Popen(["openssl", "rsa", "-pubout", "-inform", "PEM", "-outform", "DER", "-in", key], stdout=PIPE).stdout.read(); out=open(output, "wb"); out.write("Cr24") # Extension file magic number header = array("l"); header.append(2); # Version 2 header.append(len(derkey)); header.append(len(signature)); header.tofile(out); out.write(derkey) out.write(signature) out.write(open(input).read()) os.unlink(input) print "Done." if __name__ == '__main__': main(sys.argv) Please could you help me?

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  • Problem with setjmp/longjmp

    - by user294732
    The code below is just not working. Can anybody point out why #define STACK_SIZE 1524 static void mt_allocate_stack(struct thread_struct *mythrd) { unsigned int sp = 0; void *stck; stck = (void *)malloc(STACK_SIZE); sp = (unsigned int)&((stck)); sp = sp + STACK_SIZE; while((sp % 8) != 0) sp--; #ifdef linux (mythrd->saved_state[0]).__jmpbuf[JB_BP] = (int)sp; (mythrd->saved_state[0]).__jmpbuf[JB_SP] = (int)sp-500; #endif } void mt_sched() { fprintf(stdout,"\n Inside the mt_sched"); fflush(stdout); if ( current_thread->state == NEW ) { if ( setjmp(current_thread->saved_state) == 0 ) { mt_allocate_stack(current_thread); fprintf(stdout,"\n Jumping to thread = %u",current_thread->thread_id); fflush(stdout); longjmp(current_thread->saved_state, 2); } else { new_fns(); } } } All I am trying to do is to run the new_fns() on a new stack. But is is showing segmentation fault at new_fns(). Can anybody point me out what's wrong.

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  • How can i use a commandlinetool (ie. sox) via subprocess.Popen with mod_wsgi?

    - by marue
    I have a custom django filefield that makes use of sox, a commandline audiotool. This works pretty well as long as i use the django development server. But as soon as i switch to the production server, using apache2 and mod_wsgi, mod_wsgi catches every output to stdout. This makes it impossible to use the commandline tool to evaluate the file, for example use it to check if the uploaded file really is an audio file like this: filetype=subprocess.Popen([sox,'--i','-t','%s'%self.path], shell=False,\ stdout=subprocess.PIPE, stderr=subprocess.PIPE) (filetype,error)=filetype.communicate() if error: raise EnvironmentError((1,'AudioFile error while determining audioformat: %s'%error)) Is there a way to workaround for this? edit the error i get is "missing filename". I am using mod_wsgi 2.5, standard with ubuntu 8.04. edit2 What exactly happens, when i call subprocess.Popen from within django in mod_wsgi? Shouldn't subprocess stdin/stdout be independent from django stdin/stdout? In that case mod_wsgi should not affect programms called via subprocess... I'm really confused right now, because the file i am trying to access is a temporary file, created via a filenamevariable that i pass to the file creation and the subprocess command. That file is being written to /tmp, where the rights are 777, so it can't be a rights issue. And the error message is not "file does not exist", but "missing filename", which suggests i am not passing a filename as parameter to the commandlinetool.

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  • Need a Java based interruptible timer thread

    - by LambeauLeap
    I have a Main Program which is running a script on the target device(smart phone) and in a while loop waiting for stdout messages. However in this particular case, some of the heartbeat messages on the stdout could be spaced almost 45secs to a 1minute apart. something like: stream = device.runProgram(RESTORE_LOGS, new String[] {}); stream.flush(); String line = stream.readLine(); while (line.compareTo("") != 0) { reporter.commentOnJob(jobId, line); line = stream.readLine(); } So, I want to be a able to start a new interruptible thread after reading line from stdout with a required a sleep window. Upon being able to read a new line, I want to be able to interrupt/stop(having trouble killing the process), handle the newline of stdout text and restart a process. And it the event I am not able to read a line within the timer window(say 45secs) I want to a way to get out of my while loop either. I already tried the thread.run, thread.interrupt approach. But having trouble killing and starting a new thread. Is this the best way out or am I missing something obvious?

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  • Why should main() be short?

    - by Stargazer712
    I've been programming for over 9 years, and according to the advice of my first programming teacher, I always keep my main() function extremely short. At first I had no idea why. I just obeyed without understanding, much to the delight of my professors. After gaining experience, I realized that if I designed my code correctly, having a short main() function just sortof happened. Writing modularized code and following the single responsibility principle allowed my code to be designed in "bunches", and main() served as nothing more than a catalyst to get the program running. Fast forward to a few weeks ago, I was looking at Python's souce code, and I found the main() function: /* Minimal main program -- everything is loaded from the library */ ... int main(int argc, char **argv) { ... return Py_Main(argc, argv); } Yay Python. Short main() function == Good code. Programming teachers were right. Wanting to look deeper, I took a look at Py_Main. In its entirety, it is defined as follows: /* Main program */ int Py_Main(int argc, char **argv) { int c; int sts; char *command = NULL; char *filename = NULL; char *module = NULL; FILE *fp = stdin; char *p; int unbuffered = 0; int skipfirstline = 0; int stdin_is_interactive = 0; int help = 0; int version = 0; int saw_unbuffered_flag = 0; PyCompilerFlags cf; cf.cf_flags = 0; orig_argc = argc; /* For Py_GetArgcArgv() */ orig_argv = argv; #ifdef RISCOS Py_RISCOSWimpFlag = 0; #endif PySys_ResetWarnOptions(); while ((c = _PyOS_GetOpt(argc, argv, PROGRAM_OPTS)) != EOF) { if (c == 'c') { /* -c is the last option; following arguments that look like options are left for the command to interpret. */ command = (char *)malloc(strlen(_PyOS_optarg) + 2); if (command == NULL) Py_FatalError( "not enough memory to copy -c argument"); strcpy(command, _PyOS_optarg); strcat(command, "\n"); break; } if (c == 'm') { /* -m is the last option; following arguments that look like options are left for the module to interpret. */ module = (char *)malloc(strlen(_PyOS_optarg) + 2); if (module == NULL) Py_FatalError( "not enough memory to copy -m argument"); strcpy(module, _PyOS_optarg); break; } switch (c) { case 'b': Py_BytesWarningFlag++; break; case 'd': Py_DebugFlag++; break; case '3': Py_Py3kWarningFlag++; if (!Py_DivisionWarningFlag) Py_DivisionWarningFlag = 1; break; case 'Q': if (strcmp(_PyOS_optarg, "old") == 0) { Py_DivisionWarningFlag = 0; break; } if (strcmp(_PyOS_optarg, "warn") == 0) { Py_DivisionWarningFlag = 1; break; } if (strcmp(_PyOS_optarg, "warnall") == 0) { Py_DivisionWarningFlag = 2; break; } if (strcmp(_PyOS_optarg, "new") == 0) { /* This only affects __main__ */ cf.cf_flags |= CO_FUTURE_DIVISION; /* And this tells the eval loop to treat BINARY_DIVIDE as BINARY_TRUE_DIVIDE */ _Py_QnewFlag = 1; break; } fprintf(stderr, "-Q option should be `-Qold', " "`-Qwarn', `-Qwarnall', or `-Qnew' only\n"); return usage(2, argv[0]); /* NOTREACHED */ case 'i': Py_InspectFlag++; Py_InteractiveFlag++; break; /* case 'J': reserved for Jython */ case 'O': Py_OptimizeFlag++; break; case 'B': Py_DontWriteBytecodeFlag++; break; case 's': Py_NoUserSiteDirectory++; break; case 'S': Py_NoSiteFlag++; break; case 'E': Py_IgnoreEnvironmentFlag++; break; case 't': Py_TabcheckFlag++; break; case 'u': unbuffered++; saw_unbuffered_flag = 1; break; case 'v': Py_VerboseFlag++; break; #ifdef RISCOS case 'w': Py_RISCOSWimpFlag = 1; break; #endif case 'x': skipfirstline = 1; break; /* case 'X': reserved for implementation-specific arguments */ case 'U': Py_UnicodeFlag++; break; case 'h': case '?': help++; break; case 'V': version++; break; case 'W': PySys_AddWarnOption(_PyOS_optarg); break; /* This space reserved for other options */ default: return usage(2, argv[0]); /*NOTREACHED*/ } } if (help) return usage(0, argv[0]); if (version) { fprintf(stderr, "Python %s\n", PY_VERSION); return 0; } if (Py_Py3kWarningFlag && !Py_TabcheckFlag) /* -3 implies -t (but not -tt) */ Py_TabcheckFlag = 1; if (!Py_InspectFlag && (p = Py_GETENV("PYTHONINSPECT")) && *p != '\0') Py_InspectFlag = 1; if (!saw_unbuffered_flag && (p = Py_GETENV("PYTHONUNBUFFERED")) && *p != '\0') unbuffered = 1; if (!Py_NoUserSiteDirectory && (p = Py_GETENV("PYTHONNOUSERSITE")) && *p != '\0') Py_NoUserSiteDirectory = 1; if ((p = Py_GETENV("PYTHONWARNINGS")) && *p != '\0') { char *buf, *warning; buf = (char *)malloc(strlen(p) + 1); if (buf == NULL) Py_FatalError( "not enough memory to copy PYTHONWARNINGS"); strcpy(buf, p); for (warning = strtok(buf, ","); warning != NULL; warning = strtok(NULL, ",")) PySys_AddWarnOption(warning); free(buf); } if (command == NULL && module == NULL && _PyOS_optind < argc && strcmp(argv[_PyOS_optind], "-") != 0) { #ifdef __VMS filename = decc$translate_vms(argv[_PyOS_optind]); if (filename == (char *)0 || filename == (char *)-1) filename = argv[_PyOS_optind]; #else filename = argv[_PyOS_optind]; #endif } stdin_is_interactive = Py_FdIsInteractive(stdin, (char *)0); if (unbuffered) { #if defined(MS_WINDOWS) || defined(__CYGWIN__) _setmode(fileno(stdin), O_BINARY); _setmode(fileno(stdout), O_BINARY); #endif #ifdef HAVE_SETVBUF setvbuf(stdin, (char *)NULL, _IONBF, BUFSIZ); setvbuf(stdout, (char *)NULL, _IONBF, BUFSIZ); setvbuf(stderr, (char *)NULL, _IONBF, BUFSIZ); #else /* !HAVE_SETVBUF */ setbuf(stdin, (char *)NULL); setbuf(stdout, (char *)NULL); setbuf(stderr, (char *)NULL); #endif /* !HAVE_SETVBUF */ } else if (Py_InteractiveFlag) { #ifdef MS_WINDOWS /* Doesn't have to have line-buffered -- use unbuffered */ /* Any set[v]buf(stdin, ...) screws up Tkinter :-( */ setvbuf(stdout, (char *)NULL, _IONBF, BUFSIZ); #else /* !MS_WINDOWS */ #ifdef HAVE_SETVBUF setvbuf(stdin, (char *)NULL, _IOLBF, BUFSIZ); setvbuf(stdout, (char *)NULL, _IOLBF, BUFSIZ); #endif /* HAVE_SETVBUF */ #endif /* !MS_WINDOWS */ /* Leave stderr alone - it should be unbuffered anyway. */ } #ifdef __VMS else { setvbuf (stdout, (char *)NULL, _IOLBF, BUFSIZ); } #endif /* __VMS */ #ifdef __APPLE__ /* On MacOS X, when the Python interpreter is embedded in an application bundle, it gets executed by a bootstrapping script that does os.execve() with an argv[0] that's different from the actual Python executable. This is needed to keep the Finder happy, or rather, to work around Apple's overly strict requirements of the process name. However, we still need a usable sys.executable, so the actual executable path is passed in an environment variable. See Lib/plat-mac/bundlebuiler.py for details about the bootstrap script. */ if ((p = Py_GETENV("PYTHONEXECUTABLE")) && *p != '\0') Py_SetProgramName(p); else Py_SetProgramName(argv[0]); #else Py_SetProgramName(argv[0]); #endif Py_Initialize(); if (Py_VerboseFlag || (command == NULL && filename == NULL && module == NULL && stdin_is_interactive)) { fprintf(stderr, "Python %s on %s\n", Py_GetVersion(), Py_GetPlatform()); if (!Py_NoSiteFlag) fprintf(stderr, "%s\n", COPYRIGHT); } if (command != NULL) { /* Backup _PyOS_optind and force sys.argv[0] = '-c' */ _PyOS_optind--; argv[_PyOS_optind] = "-c"; } if (module != NULL) { /* Backup _PyOS_optind and force sys.argv[0] = '-c' so that PySys_SetArgv correctly sets sys.path[0] to '' rather than looking for a file called "-m". See tracker issue #8202 for details. */ _PyOS_optind--; argv[_PyOS_optind] = "-c"; } PySys_SetArgv(argc-_PyOS_optind, argv+_PyOS_optind); if ((Py_InspectFlag || (command == NULL && filename == NULL && module == NULL)) && isatty(fileno(stdin))) { PyObject *v; v = PyImport_ImportModule("readline"); if (v == NULL) PyErr_Clear(); else Py_DECREF(v); } if (command) { sts = PyRun_SimpleStringFlags(command, &cf) != 0; free(command); } else if (module) { sts = RunModule(module, 1); free(module); } else { if (filename == NULL && stdin_is_interactive) { Py_InspectFlag = 0; /* do exit on SystemExit */ RunStartupFile(&cf); } /* XXX */ sts = -1; /* keep track of whether we've already run __main__ */ if (filename != NULL) { sts = RunMainFromImporter(filename); } if (sts==-1 && filename!=NULL) { if ((fp = fopen(filename, "r")) == NULL) { fprintf(stderr, "%s: can't open file '%s': [Errno %d] %s\n", argv[0], filename, errno, strerror(errno)); return 2; } else if (skipfirstline) { int ch; /* Push back first newline so line numbers remain the same */ while ((ch = getc(fp)) != EOF) { if (ch == '\n') { (void)ungetc(ch, fp); break; } } } { /* XXX: does this work on Win/Win64? (see posix_fstat) */ struct stat sb; if (fstat(fileno(fp), &sb) == 0 && S_ISDIR(sb.st_mode)) { fprintf(stderr, "%s: '%s' is a directory, cannot continue\n", argv[0], filename); fclose(fp); return 1; } } } if (sts==-1) { /* call pending calls like signal handlers (SIGINT) */ if (Py_MakePendingCalls() == -1) { PyErr_Print(); sts = 1; } else { sts = PyRun_AnyFileExFlags( fp, filename == NULL ? "<stdin>" : filename, filename != NULL, &cf) != 0; } } } /* Check this environment variable at the end, to give programs the * opportunity to set it from Python. */ if (!Py_InspectFlag && (p = Py_GETENV("PYTHONINSPECT")) && *p != '\0') { Py_InspectFlag = 1; } if (Py_InspectFlag && stdin_is_interactive && (filename != NULL || command != NULL || module != NULL)) { Py_InspectFlag = 0; /* XXX */ sts = PyRun_AnyFileFlags(stdin, "<stdin>", &cf) != 0; } Py_Finalize(); #ifdef RISCOS if (Py_RISCOSWimpFlag) fprintf(stderr, "\x0cq\x0c"); /* make frontend quit */ #endif #ifdef __INSURE__ /* Insure++ is a memory analysis tool that aids in discovering * memory leaks and other memory problems. On Python exit, the * interned string dictionary is flagged as being in use at exit * (which it is). Under normal circumstances, this is fine because * the memory will be automatically reclaimed by the system. Under * memory debugging, it's a huge source of useless noise, so we * trade off slower shutdown for less distraction in the memory * reports. -baw */ _Py_ReleaseInternedStrings(); #endif /* __INSURE__ */ return sts; } Good God Almighty...it is big enough to sink the Titanic. It seems as though Python did the "Intro to Programming 101" trick and just moved all of main()'s code to a different function called it something very similar to "main". Here's my question: Is this code terribly written, or are there other reasons reasons to have a short main function? As it stands right now, I see absolutely no difference between doing this and just moving the code in Py_Main() back into main(). Am I wrong in thinking this?

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  • Why should main() be short?

    - by Stargazer712
    I've been programming for over 9 years, and according to the advice of my first programming teacher, I always keep my main() function extremely short. At first I had no idea why. I just obeyed without understanding, much to the delight of my professors. After gaining experience, I realized that if I designed my code correctly, having a short main() function just sortof happened. Writing modularized code and following the single responsibility principle allowed my code to be designed in "bunches", and main() served as nothing more than a catalyst to get the program running. Fast forward to a few weeks ago, I was looking at Python's souce code, and I found the main() function: /* Minimal main program -- everything is loaded from the library */ ... int main(int argc, char **argv) { ... return Py_Main(argc, argv); } Yay python. Short main() function == Good code. Programming teachers were right. Wanting to look deeper, I took a look at Py_Main. In its entirety, it is defined as follows: /* Main program */ int Py_Main(int argc, char **argv) { int c; int sts; char *command = NULL; char *filename = NULL; char *module = NULL; FILE *fp = stdin; char *p; int unbuffered = 0; int skipfirstline = 0; int stdin_is_interactive = 0; int help = 0; int version = 0; int saw_unbuffered_flag = 0; PyCompilerFlags cf; cf.cf_flags = 0; orig_argc = argc; /* For Py_GetArgcArgv() */ orig_argv = argv; #ifdef RISCOS Py_RISCOSWimpFlag = 0; #endif PySys_ResetWarnOptions(); while ((c = _PyOS_GetOpt(argc, argv, PROGRAM_OPTS)) != EOF) { if (c == 'c') { /* -c is the last option; following arguments that look like options are left for the command to interpret. */ command = (char *)malloc(strlen(_PyOS_optarg) + 2); if (command == NULL) Py_FatalError( "not enough memory to copy -c argument"); strcpy(command, _PyOS_optarg); strcat(command, "\n"); break; } if (c == 'm') { /* -m is the last option; following arguments that look like options are left for the module to interpret. */ module = (char *)malloc(strlen(_PyOS_optarg) + 2); if (module == NULL) Py_FatalError( "not enough memory to copy -m argument"); strcpy(module, _PyOS_optarg); break; } switch (c) { case 'b': Py_BytesWarningFlag++; break; case 'd': Py_DebugFlag++; break; case '3': Py_Py3kWarningFlag++; if (!Py_DivisionWarningFlag) Py_DivisionWarningFlag = 1; break; case 'Q': if (strcmp(_PyOS_optarg, "old") == 0) { Py_DivisionWarningFlag = 0; break; } if (strcmp(_PyOS_optarg, "warn") == 0) { Py_DivisionWarningFlag = 1; break; } if (strcmp(_PyOS_optarg, "warnall") == 0) { Py_DivisionWarningFlag = 2; break; } if (strcmp(_PyOS_optarg, "new") == 0) { /* This only affects __main__ */ cf.cf_flags |= CO_FUTURE_DIVISION; /* And this tells the eval loop to treat BINARY_DIVIDE as BINARY_TRUE_DIVIDE */ _Py_QnewFlag = 1; break; } fprintf(stderr, "-Q option should be `-Qold', " "`-Qwarn', `-Qwarnall', or `-Qnew' only\n"); return usage(2, argv[0]); /* NOTREACHED */ case 'i': Py_InspectFlag++; Py_InteractiveFlag++; break; /* case 'J': reserved for Jython */ case 'O': Py_OptimizeFlag++; break; case 'B': Py_DontWriteBytecodeFlag++; break; case 's': Py_NoUserSiteDirectory++; break; case 'S': Py_NoSiteFlag++; break; case 'E': Py_IgnoreEnvironmentFlag++; break; case 't': Py_TabcheckFlag++; break; case 'u': unbuffered++; saw_unbuffered_flag = 1; break; case 'v': Py_VerboseFlag++; break; #ifdef RISCOS case 'w': Py_RISCOSWimpFlag = 1; break; #endif case 'x': skipfirstline = 1; break; /* case 'X': reserved for implementation-specific arguments */ case 'U': Py_UnicodeFlag++; break; case 'h': case '?': help++; break; case 'V': version++; break; case 'W': PySys_AddWarnOption(_PyOS_optarg); break; /* This space reserved for other options */ default: return usage(2, argv[0]); /*NOTREACHED*/ } } if (help) return usage(0, argv[0]); if (version) { fprintf(stderr, "Python %s\n", PY_VERSION); return 0; } if (Py_Py3kWarningFlag && !Py_TabcheckFlag) /* -3 implies -t (but not -tt) */ Py_TabcheckFlag = 1; if (!Py_InspectFlag && (p = Py_GETENV("PYTHONINSPECT")) && *p != '\0') Py_InspectFlag = 1; if (!saw_unbuffered_flag && (p = Py_GETENV("PYTHONUNBUFFERED")) && *p != '\0') unbuffered = 1; if (!Py_NoUserSiteDirectory && (p = Py_GETENV("PYTHONNOUSERSITE")) && *p != '\0') Py_NoUserSiteDirectory = 1; if ((p = Py_GETENV("PYTHONWARNINGS")) && *p != '\0') { char *buf, *warning; buf = (char *)malloc(strlen(p) + 1); if (buf == NULL) Py_FatalError( "not enough memory to copy PYTHONWARNINGS"); strcpy(buf, p); for (warning = strtok(buf, ","); warning != NULL; warning = strtok(NULL, ",")) PySys_AddWarnOption(warning); free(buf); } if (command == NULL && module == NULL && _PyOS_optind < argc && strcmp(argv[_PyOS_optind], "-") != 0) { #ifdef __VMS filename = decc$translate_vms(argv[_PyOS_optind]); if (filename == (char *)0 || filename == (char *)-1) filename = argv[_PyOS_optind]; #else filename = argv[_PyOS_optind]; #endif } stdin_is_interactive = Py_FdIsInteractive(stdin, (char *)0); if (unbuffered) { #if defined(MS_WINDOWS) || defined(__CYGWIN__) _setmode(fileno(stdin), O_BINARY); _setmode(fileno(stdout), O_BINARY); #endif #ifdef HAVE_SETVBUF setvbuf(stdin, (char *)NULL, _IONBF, BUFSIZ); setvbuf(stdout, (char *)NULL, _IONBF, BUFSIZ); setvbuf(stderr, (char *)NULL, _IONBF, BUFSIZ); #else /* !HAVE_SETVBUF */ setbuf(stdin, (char *)NULL); setbuf(stdout, (char *)NULL); setbuf(stderr, (char *)NULL); #endif /* !HAVE_SETVBUF */ } else if (Py_InteractiveFlag) { #ifdef MS_WINDOWS /* Doesn't have to have line-buffered -- use unbuffered */ /* Any set[v]buf(stdin, ...) screws up Tkinter :-( */ setvbuf(stdout, (char *)NULL, _IONBF, BUFSIZ); #else /* !MS_WINDOWS */ #ifdef HAVE_SETVBUF setvbuf(stdin, (char *)NULL, _IOLBF, BUFSIZ); setvbuf(stdout, (char *)NULL, _IOLBF, BUFSIZ); #endif /* HAVE_SETVBUF */ #endif /* !MS_WINDOWS */ /* Leave stderr alone - it should be unbuffered anyway. */ } #ifdef __VMS else { setvbuf (stdout, (char *)NULL, _IOLBF, BUFSIZ); } #endif /* __VMS */ #ifdef __APPLE__ /* On MacOS X, when the Python interpreter is embedded in an application bundle, it gets executed by a bootstrapping script that does os.execve() with an argv[0] that's different from the actual Python executable. This is needed to keep the Finder happy, or rather, to work around Apple's overly strict requirements of the process name. However, we still need a usable sys.executable, so the actual executable path is passed in an environment variable. See Lib/plat-mac/bundlebuiler.py for details about the bootstrap script. */ if ((p = Py_GETENV("PYTHONEXECUTABLE")) && *p != '\0') Py_SetProgramName(p); else Py_SetProgramName(argv[0]); #else Py_SetProgramName(argv[0]); #endif Py_Initialize(); if (Py_VerboseFlag || (command == NULL && filename == NULL && module == NULL && stdin_is_interactive)) { fprintf(stderr, "Python %s on %s\n", Py_GetVersion(), Py_GetPlatform()); if (!Py_NoSiteFlag) fprintf(stderr, "%s\n", COPYRIGHT); } if (command != NULL) { /* Backup _PyOS_optind and force sys.argv[0] = '-c' */ _PyOS_optind--; argv[_PyOS_optind] = "-c"; } if (module != NULL) { /* Backup _PyOS_optind and force sys.argv[0] = '-c' so that PySys_SetArgv correctly sets sys.path[0] to '' rather than looking for a file called "-m". See tracker issue #8202 for details. */ _PyOS_optind--; argv[_PyOS_optind] = "-c"; } PySys_SetArgv(argc-_PyOS_optind, argv+_PyOS_optind); if ((Py_InspectFlag || (command == NULL && filename == NULL && module == NULL)) && isatty(fileno(stdin))) { PyObject *v; v = PyImport_ImportModule("readline"); if (v == NULL) PyErr_Clear(); else Py_DECREF(v); } if (command) { sts = PyRun_SimpleStringFlags(command, &cf) != 0; free(command); } else if (module) { sts = RunModule(module, 1); free(module); } else { if (filename == NULL && stdin_is_interactive) { Py_InspectFlag = 0; /* do exit on SystemExit */ RunStartupFile(&cf); } /* XXX */ sts = -1; /* keep track of whether we've already run __main__ */ if (filename != NULL) { sts = RunMainFromImporter(filename); } if (sts==-1 && filename!=NULL) { if ((fp = fopen(filename, "r")) == NULL) { fprintf(stderr, "%s: can't open file '%s': [Errno %d] %s\n", argv[0], filename, errno, strerror(errno)); return 2; } else if (skipfirstline) { int ch; /* Push back first newline so line numbers remain the same */ while ((ch = getc(fp)) != EOF) { if (ch == '\n') { (void)ungetc(ch, fp); break; } } } { /* XXX: does this work on Win/Win64? (see posix_fstat) */ struct stat sb; if (fstat(fileno(fp), &sb) == 0 && S_ISDIR(sb.st_mode)) { fprintf(stderr, "%s: '%s' is a directory, cannot continue\n", argv[0], filename); fclose(fp); return 1; } } } if (sts==-1) { /* call pending calls like signal handlers (SIGINT) */ if (Py_MakePendingCalls() == -1) { PyErr_Print(); sts = 1; } else { sts = PyRun_AnyFileExFlags( fp, filename == NULL ? "<stdin>" : filename, filename != NULL, &cf) != 0; } } } /* Check this environment variable at the end, to give programs the * opportunity to set it from Python. */ if (!Py_InspectFlag && (p = Py_GETENV("PYTHONINSPECT")) && *p != '\0') { Py_InspectFlag = 1; } if (Py_InspectFlag && stdin_is_interactive && (filename != NULL || command != NULL || module != NULL)) { Py_InspectFlag = 0; /* XXX */ sts = PyRun_AnyFileFlags(stdin, "<stdin>", &cf) != 0; } Py_Finalize(); #ifdef RISCOS if (Py_RISCOSWimpFlag) fprintf(stderr, "\x0cq\x0c"); /* make frontend quit */ #endif #ifdef __INSURE__ /* Insure++ is a memory analysis tool that aids in discovering * memory leaks and other memory problems. On Python exit, the * interned string dictionary is flagged as being in use at exit * (which it is). Under normal circumstances, this is fine because * the memory will be automatically reclaimed by the system. Under * memory debugging, it's a huge source of useless noise, so we * trade off slower shutdown for less distraction in the memory * reports. -baw */ _Py_ReleaseInternedStrings(); #endif /* __INSURE__ */ return sts; } Good God Almighty...it is big enough to sink the Titanic. It seems as though Python did the "Intro to Programming 101" trick and just moved all of main()'s code to a different function called it something very similar to "main". Here's my question: Is this code terribly written, or are there other reasons to have a short main function? As it stands right now, I see absolutely no difference between doing this and just moving the code in Py_Main() back into main(). Am I wrong in thinking this?

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  • Why my shell program wont open the file got as argument in function "cat"

    - by anna karenina
    I included the code below, sorry to bother you with so much code. Argument parsing is ok, i checked it out with watches. I've put some printfs to check out where the problem may be and it seems that it wont open the file cat receives as argument. i called from shell like "cat -b file" #include <stdio.h> #include <stdlib.h> #include <unistd.h> #include <string.h> #define TRUE 0 #define FALSE 1 void yes(int argc, char *argv[]); int cat(int argc, char *argv[]); //#include "cat.h" //#include "yes.h" //#include"tee.h" char buf[50],c[10], *p2,*p, *pch; int count; char *matrix[20]; void yes(int argc, char *argv[]) { int i; // if (argc >= 2 && *argv[1] == '-') // { //printf("ERROR!"); //} //if (argc == 1) // { while (1) if (puts("y") == EOF) { perror("yes"); exit(FALSE); } // } while (1) for (i = 1; i < argc; i++) if (fputs(argv[i], stdout) == EOF || putchar(i == argc - 1 ? '\n' : ' ') == EOF) { perror("yes"); exit(FALSE); } //exit(TRUE); } int main(int argc, char *argv[]) { //p=(char *)malloc(sizeof(char)*50); do { fprintf (stderr, "$ "); fgets (buf,50,stdin); p=buf; fprintf (stderr, "Comanda primita de la tastatura: "); fputs (buf, stderr); int i=0,j=0; //strcpy(p,buf); strcpy(c,"\0"); while (buf[i] == ' ') { i++; p++; } if (buf[i] == '#') fprintf (stderr, "Nici o comanda, ci e un comentariu!\n"); else { j=0; while (buf[i] != ' ' && buf[i] != '\n') { i++; j++; } strncpy (c,p,j); fprintf (stderr, "%s\n",c); if (strcmp (c,"yes") == 0) { p2 = p+j+1; pch = strtok (p2," "); count = 0; while (pch != NULL) { //printf ("%s\n",pch); matrix[count] = strdup(pch); pch = strtok (NULL, " "); count++; } yes(count, matrix); fprintf (stderr, "Aici se va executa comanda yes\n"); } else if (strcmp (c,"cat") == 0) { p2 = p+j+1; pch = strtok (p2," "); count = 0; while (pch != NULL) { //printf ("%s\n",pch); matrix[count] = strdup(pch); pch = strtok (NULL, " "); count++; } cat(count,matrix); fprintf (stderr, "Aici se va executa comanda cat \n"); } else if (strcmp (c,"tee") == 0) { //tee(); fprintf(stderr, "Aici se va executa comanda tee\n"); } fprintf (stderr, "Aici se va executa comanda basename\n"); strcpy(buf,"\0"); } } while (strcmp(c, "exit") != 0); fprintf (stderr, "Terminat corect!\n"); return 0; } int cat(int argc, char *argv[]) { int c ; opterr = 0 ; optind = 0 ; char number = 0; char squeeze = 0; char marker = 0; fprintf(stderr,"SALUT< SUNT IN FUNCTIZE>\n"); while ((c = getopt (argc, argv, "bnsE")) != -1) switch (c) { case 'b' : number = 1; break; case 'n' : number = 2; break; case 'm' : marker = 1; break; case 's' : squeeze = 1; break; case 'E' : marker = 1; break; } if (optind + 1 != argc) { fprintf (stderr, "\tWrong arguments!\n") ; return -1 ; } FILE * fd = fopen (argv[optind], "r"); printf("am deschis fisierul %s ",argv[optind]); if (fd == NULL) { printf("FISIER NULL asdasdasdasdasd"); return 1; } char line[1025]; int line_count = 1; while (!feof(fd)) { fgets(line, 1025, fd); printf("sunt in while :> %s",line); int len = strlen(line); if (line[len - 1] == '\n') { if(len - 2 >= 0) { if(line[len - 2] == '\r') { line[len - 2] = '\0'; len -= 2; } else { line[len - 1] = '\0'; len -= 1; } } else { line[len - 1] = '\0'; len -= 1; } } if (squeeze == 1 && len == 0) continue; if (number == 1) { fprintf (stdout, "%4d ", line_count); line_count++; } else if (number == 2) { if (len > 0) { fprintf (stdout, "%4d ", line_count); line_count++; } else fprintf (stdout, " "); } fprintf(stdout, "%s", line); if (marker == 1) fprintf(stdout, "$"); fprintf(stdout, "\n"); } fclose (fd); return 0 ; }

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  • do-while loop in Python?

    - by Eye of Hell
    I need to emulate a do-while loop in a python. But, unfortunately, following straightforward code does not work: l = [ 1, 2, 3 ] i = l.__iter__() s = None while True : if s : print s try : s = i.next() except StopIteration : break print "done" Instead of "1,2,3,done" I have the following output: [stdout:]1 [stdout:]2 [stdout:]3 None['Traceback (most recent call last): ', ' File "test_python.py", line 8, in <module> s = i.next() ', 'StopIteration '] What can I do in order to catch 'stop iteration' excepton and break a while loop properly? Example why such thing may be needed. State machine: s = "" while True : if state is STATE_CODE : if "//" in s : tokens.add( TOKEN_COMMENT, s.split( "//" )[1] ) state = STATE_COMMENT else : tokens.add( TOKEN_CODE, s ) if state is STATE_COMMENT : if "//" in s : tokens.append( TOKEN_COMMENT, s.split( "//" )[1] ) else state = STATE_CODE # re-evaluate same line continue try : s = i.next() except StopIteration : break

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  • How can I redirect the output of Perl's system() to a filehandle?

    - by syker
    With the open command in Perl, you can use a filehandle. However I have trouble getting back the exit code with the open command in Perl. With the system command in Perl, I can get back the exit code of the program I'm running. However I want to just redirect the STDOUT to some filehandle (no stderr). My stdout is going to be a line-by-line output of key-value pairs that I want to insert into a mao in perl. That is why I want to redirect only my stdout from my Java program in perl. Is that possible? Note: If I get errors, the errors get printed to stderr. One possibility is to check if anything gets printed to stderr so that I can quite the Perl script.

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  • Python UTF-16 encoding hex representation

    - by Romeno
    I have a string in Python 2.7.2 say u"\u0638". When I write it to file: f = open("J:\\111.txt", "w+") f.write(u"\u0638".encode('utf-16')) f.close() In hex it looks like: FF FE 38 06 When i print such a string to stdout i will see: '\xff\xfe8\x06'. The querstion: Where is \x38 in the string output to stdout? In other words why the string output to stdout is not '\xff\xfe\x38\x06'? If I write the string to file twice: f = open("J:\\111.txt", "w+") f.write(u"\u0638".encode('utf-16')) f.write(u"\u0638".encode('utf-16')) f.close() The hex representation in file contains byte order mark (BOM) \xff\xfe twice: FF FE 38 06 FF FE 38 06 I wonder what is the techique to avoid writting BOM in UTF-16 encoded strings?

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  • glibc backtrace - can't redirect output to file

    - by Jason Antman
    Hi, I'm in the process of debugging a C program (that I didn't write). I have all of the internal debugging tools (a whole bunch of printf's) enabled, and I wrote a small PHP script that uses proc_open() and just grabs both stdout and stderr, and time-coordinates them in one file. At the moment, the binary is dieing with a realloc() error that's caught by glibc, and a glibc backtrace is printed, beginning with: *** glibc detected *** /sbin/rsyslogd: realloc(): invalid next size: 0x00002ace626ac910 *** Here's the thing I don't understand: I've confirmed that the PHP script is catching both stdout and stderr from the binary's process and writing them to the correct files, but this backtrace is still printed to the console. Where is this coming from? Is there some magical output channel other than stdout and stderr? Any ideas on how I go about capturing this backtrace to a file, or sending it out with stderr? Thanks, Jason

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  • Subprocess fails to catch the standard output

    - by user343934
    I am trying to generate tree with fasta file input and Alignment with MuscleCommandline import sys,os, subprocess from Bio import AlignIO from Bio.Align.Applications import MuscleCommandline cline = MuscleCommandline(input="c:\Python26\opuntia.fasta") child= subprocess.Popen(str(cline), stdout = subprocess.PIPE, stderr=subprocess.PIPE, shell=(sys.platform!="win32")) align=AlignIO.read(child.stdout,"fasta") outfile=open('c:\Python26\opuntia.phy','w') AlignIO.write([align],outfile,'phylip') outfile.close() I always encounter with these problems Traceback (most recent call last): File "<string>", line 244, in run_nodebug File "C:\Python26\muscleIO.py", line 11, in <module> align=AlignIO.read(child.stdout,"fasta") File "C:\Python26\Lib\site-packages\Bio\AlignIO\__init__.py", line 423, in read raise ValueError("No records found in handle") ValueError: No records found in handle

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  • Does this variable need to be declared volatile?

    - by titaniumdecoy
    Does the out variable in the MyThread class need to be declared volatile in this code or will the "volatility" of the stdout variable in the ThreadTest class carry over? import java.io.PrintStream; class MyThread implements Runnable { int id; PrintStream out; // should this be declared volatile? MyThread(int id, PrintStream out) { this.id = id; this.out = out; } public void run() { try { Thread.currentThread().sleep((int)(1000 * Math.random())); out.println("Thread " + id); } catch (InterruptedException e) { e.printStackTrace(); } } } public class ThreadTest { static volatile PrintStream stdout = System.out; public static void main(String[] args) { for (int i = 0; i < 10; i++) { new Thread(new MyThread(i, stdout)).start(); } } }

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