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• ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2)

  - by OtagoHarbour

  I have MySQL installed on Ubuntu 11.10. I has been working fine for months but yesterday I started getting the following message ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) and cannot get rid of it. I tried /etc/init.d/mysqld start and got bash: /etc/init.d/mysqld: No such file or directory The /etc/init.d/ directory contains mysql but not mysqld. I tried sudo service mysql restart It just hung for about half an hour and then I ctrl-C-ed it. I then tried sudo service mysql start I got mysql start/running But when I tried mysql I got ERROR 2002 (HY000): Can't connect to local MySQL server through socket '/var/run/mysqld/mysqld.sock' (2) I tried ps aux|grep mysql and got peter 17754 0.0 0.0 4196 768 pts/1 S+ 09:38 0:00 grep --color=auto mysql I ideas about fixing this problem would be most appreciated.

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• Git and Amazon EC2 public key denied

  - by MrNart

  I had git working before on /var/html/projectfolder and realized it was a security risk so I made a new folder /projects from the root folder and tried to replicate what I did and now it doesnt work. Here is the backlog of what I did for my local machine and EC2 - server Server-EC2 1.I added my public key to the authorized_user file in ~/.ssh folder 2.Create a bare repository git init --bare 3.Change folder permissions to sudo chgrp -R ec2-user * sudo chmod -R g+ws * Local Machine create a local repository with git init touch, add, commit readme file pointed origin master to ec2 via git remote add origin ssh://ec2-user@remote-ip/path/to/folder This is my output: Permission Denied (publickey) fatal: The remote end hung up unexpectedly

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• Install Eclipse / StatET on Debian server for all users.

  - by Joris Meys

  I've manually downloaded, unpacked and installed the latest Eclipse (3.6.1) on a debian server (2.6.26-2-amd64). Eclipse can now be run by all users in our group, but when I tried to install the StatET plugin, I quickly found out that this one was only visible and useable for me. I have a sudo password on my account and a root password. I wondered if sudo eclipse was all I needed to do, but as I'm very new to the whole sysadmin thing (our old one is on "prolonged leave" and currently working in Spain) I rather check before blowing up the server. Any help on how to configure Eclipse for all users simultaneously is very much appreciated.

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• How to allow password protected start-stop-daemon functionality?

  - by Mahmoud Abdelkader

  I would like to use Ubuntu's start-stop-daemon to start my application, but the application protects some sensitive information, so I have a mechanism where the application prompts for a password that's then used to generate a hashkey, which is used as the secret key for a symmetric encryption (AES) to encrypt and decrypt things from a database. I'd like to daemonize this application and have it run from start-stop-daemon, so that sudo service appname stop and sudo service appname start would work, but, I'm not sure how to go about doing this with the added complexity of a password prompt. Is there something that supports this or do I have to program it from scratch? I figured I should ask first before re-inventing the wheel. Thanks in advance.

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• How to stop nginx on Mac OS X

  - by Alex Kaushovik

  I've installed nginx server on my Mac from MacPorts: sudo port install nginx. Then I followed the recommendation from the port installation console and created the launchd startup item for nginx, then started the server. It works fine (after I renamed nginx.conf.example to nginx.conf and renamed mime.types.example to mime.types), but I couldn't stop it... I tried sudo nginx -s stop - this doesn't stop the server, I can still see "Welcome to nginx!" page in my browser on http://localhost/, also I still see master and worker processes of nginx with ps -e | grep nginx. What is the best way to start/stop nginx on Mac? BTW, I've added "daemon off;" into nginx.conf - as recommended by various resources. Thank you.

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• Flush mod_pagespeed cache in Debian

  - by Ivar

  I need a way to flush the mod_pagespeed cache while developing. According to mod_pagespeed documents, I should run the following command: sudo touch /var/mod_pagespeed/cache/cache.flush In Debian it's "su" instead of "sudo". However, it doesn't work for me; there's no "touch" command, nor is there any "cache.flush" file in the defined directory. Have I missed something? You kick-ass Linux users, please be humble - I'm pretty new to these stuff. Thank you in advance!

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• installing a script as startup service in ubuntu

  - by Jibin

  I have a script openerp-server.py in ~/openerp/stable6/server/bin/.I want it to be run at startup.(As a service or not - I don't know the difference) These are the steps I followed 1 Created a script 'openerp-server' with the following lines in /etc/init.d/ #!/bin/sh cd ~/openerp/stable6/server/bin/ exec /usr/bin/python ./openerp-server.py $@ 2 Made the script executable by using the following command sudo chmod +x /etc/init.d/openerp-server 3 Made the link run on startup by using the following command sudo update-rc.d openerp-server I checked using sysv-rc-conf.And openerp-server was selected for run level 2,3,4,5. Now after restarting I checked if the openerp-server.py is running, it was not running. Please help.

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• compressing dd backup on the fly

  - by Phil

  Maybe this will sound like dumb question but the way i'm trying to do it doesn't work. I'm on livecd, drive is unmounted, etc. When i do backup this way sudo dd if=/dev/sda2 of=/media/disk/sda2-backup-10august09.ext3 bs=64k ...normally it would work but i don't have enough space on external hd i'm copying to (it ALMOST fits into it). So I wanted to compress this way sudo dd if=/dev/sda2 | gzip > /media/disk/sda2-backup-10august09.gz ...but i got permissions denied. I don't understand.

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• Hiding "Syntax OK" from apache2ctl output

  - by Oscar Barrett

  I am checking whether a particular apache module is installed using apache2ctl -M. When listing the modules, apache runs a syntax check on the configuration files which prints out "Syntax OK" if everything is fine. However, this message doesn't seem to be coming from STDOUT or STDERR as it shows even if all output is redirected to /dev/null. i.e. $ sudo apache2ctl -M Loaded Modules: core_module (static) log_config_module (static) ... Syntax OK $ sudo apache2ctl -M >/dev/null Syntax OK How is this being outputted, and is it possible to hide?

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• Sort command not working as expected

  - by user964689

  If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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• Can only bring up one of two interfaces

  - by mstaessen

  I'm having a bizarre issue with my HP Proliant DL 360 G4p server. It has two gigabit ethernet interfaces but I can bring up only one of them. This is starting to freak me out and that's why I turned here. I'm running the x64 ubuntu 11.10 server edition. lshw -c network shows that the second interface is disabled. I have no idea why ans how to enable it. $ sudo lshw -c network *-network:0 description: Ethernet interface product: NetXtreme BCM5704 Gigabit Ethernet vendor: Broadcom Corporation physical id: 2 bus info: pci@0000:02:02.0 logical name: eth0 version: 10 serial: 00:18:71:e3:6d:26 size: 100Mbit/s capacity: 1Gbit/s width: 64 bits clock: 66MHz capabilities: pcix pm vpd msi bus_master cap_list ethernet physical tp 10bt 10bt-fd 100bt 100bt-fd 1000bt 1000bt-fd autonegotiation configuration: autonegotiation=on broadcast=yes driver=tg3 driverversion=3.119 duplex=full firmware=5704-v3.27b, ASFIPMIc v2.36 ip=10.48.8.x latency=64 link=yes mingnt=64 multicast=yes port=twisted pair speed=100Mbit/s resources: irq:25 memory:fdf70000-fdf7ffff *-network:1 DISABLED description: Ethernet interface product: NetXtreme BCM5704 Gigabit Ethernet vendor: Broadcom Corporation physical id: 2.1 bus info: pci@0000:02:02.1 logical name: eth1 version: 10 serial: 00:18:71:e3:6d:25 capacity: 1Gbit/s width: 64 bits clock: 66MHz capabilities: pcix pm vpd msi bus_master cap_list ethernet physical tp 10bt 10bt-fd 100bt 100bt-fd 1000bt 1000bt-fd autonegotiation configuration: autonegotiation=on broadcast=yes driver=tg3 driverversion=3.119 firmware=5704-v3.27b latency=64 link=no mingnt=64 multicast=yes port=twisted pair resources: irq:26 memory:fdf60000-fdf6ffff If I try to ifup eth1, then I get $ sudo ifup eth1 Ignoring unknown interface eth1=eth1. I figured that's what happens when there is no eth1 listed in /etc/network/interfaces. But when I add the configuration for eth1, I still can't ifup. $ sudo ifup eth1 RTNETLINK answers: File exists Failed to bring up eth1. I've also tried ifconfig eth1 up but without any result. For clarity, I have added a masked version of /etc/network/interfaces. I don't think it is the cause of the problem though. $ cat /etc/network/interfaces # This file describes the network interfaces available on your system # and how to activate them. For more information, see interfaces(5). # The loopback network interface auto lo iface lo inet loopback # The primary network interface auto eth0 iface eth0 inet static address 10.48.8.x netmask 255.255.255.y network 10.48.8.z broadcast 10.48.8.t gateway 10.48.8.u auto eth1 iface eth1 inet static address 193.190.253.x netmask 255.255.255.y network 193.190.253.z broadcast 193.190.253.t gateway 193.190.253.u I really need some help fixing this. It's driving me crazy. Thanks.

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• Recursively apply ACL permissions on Mac OS X (Server)?

  - by mralexgray

  For years I've used the strong-armed-duo of these two suckers... sudo chmod +a "localadmin allow read,write,append,execute,\ delete,readattr,writeattr,readextattr,writeextattr,\ readsecurity,writesecurity,chown" sudo chmod +a "localadmin allow list,search,add_file,add_subdirectory,\ delete_child,readattr,writeattr,readextattr,\ writeextattr,readsecurity,writesecurity,chown" to, for what I figured was a recursive, and all-encompassing, whole-volume-go-ahead for each and every privilege available (for a user, localadmin). Nice when I, localadmin, want to "do something" without a lot of whining about permissions, etc. The beauty is, this method obviates the necessity to change ownership / group membership, or executable bit on anything. But is it recursive? I am beginning to think, it's not. If so, how do I do THAT? And how can one check something like this? Adding this single-user to the ACL doesn't show up in the Finder, so… Alright, cheers.

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• Run a command as cron would but from the command line.

  - by BCS

  I have a script that I'm trying to run from cron. When I run it from bash, it work just fine. However when I let cron do it's thing, I get a: myscript.sh: line 122: syntax error: unexpected end of file What I want is a way to run a command as if it was a cron job, but do it in my shell. As a side note: does anyone know what would be differnt under cron? (the script already has a #!/bin/sh line) To answer my own question: I added this to my crontab: * * * * * bcs for ((i=1; i <= 55; i++)) ; do find ~/.crontemp/ -name '*.run' -exec "{}" ";" ; sleep 1; done` and created this script: #!/bin/sh tmp=$(mktemp ~/.crontemp/cron.XXXXX) mknod $tmp.pipe p mv $tmp $tmp.pre echo $* '>' $tmp.pipe '1>&2' >> $tmp.pre echo rm $tmp.run >> $tmp.pre chmod 700 $tmp.pre mv $tmp.pre $tmp.run cat $tmp.pipe rm $tmp.pipe With that, I can run an arbitrary command with a delay of not more than one second. (And yes, I know there are all kinds of security issue involved in that)

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• Intermittent apt-get 'no installation candidate' error on fabric deploy

  - by jberryman

  I'm experiencing a strange issue with a fabric script I'm using to bootstrap a server on EC2. I launch a stock Ubuntu 12.04 AMI, wait for it to start, then proceed with: with settings(host_string="ubuntu@%s" % i.dns_name, connection_attempts=30): sudo('apt-get -qy update') sudo('apt-get -qy install --no-install-recommends mdadm') # don't install postfix #etc... The apt-get update appears to run fine and gives no errors, however (2/3 of the time or so) installing mdadm throws a "no installation candidate" error. When I ssh into the server and run apt-get install mdadm I get the same error. Running apt-get update by hand, then the package installs fine. Any ideas on what might be happening, or ideas for debugging?

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• Why is my ethernet interface in promiscuous mode

  - by nhed

  I read that seeing a flag of M in netstat -i is the way to tell which of your interfaces is in promiscuous mode I run it and I see that eth1 is in promiscuous mode $ netstat -i Kernel Interface table Iface MTU Met RX-OK RX-ERR RX-DRP RX-OVR TX-OK TX-ERR TX-DRP TX-OVR Flg eth1 1500 0 1770161198 0 0 0 57446481 0 0 0 BMRU lo 16436 0 97501566 0 0 0 97501566 0 0 0 LRU This seems to be the case on all the machines I checked (All Centos6.0, both virtual and physical), any idea why ethernet devices would be in such a mode unless someone was running any pcap based app (sudo lsof | grep pcap shows nothing)? I did not see any mention of promiscuous in any of the config files (sudo grep -r promis /etc) Any ideas what puts the interface into that mode and why? p.s. most of the posts I see seem to be security related, this is not that

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• Can't read directory owned by my group

  - by Jonathan

  I moved the postgres data directory to a separate partition and it works great. The directory is owned by postgres user and postgres group. d-wx------ 11 postgres postgres 4.0K 2010-06-11 08:28 data/ I added myself to the group > sudo addgroup me postgres > groups me me : me adm dialout cdrom plugdev lpadmin admin sambashare postgres And gave the group read and execute permissions to everything in the directory. sudo chmod -R g+rx ./data d-wxr-x--- 11 postgres postgres 4.0K 2010-06-11 08:28 data/ But I still can not CD or LS the directory. > ls data ls: cannot open directory data: Permission denied What beginner mistake am I making?

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• J-Monkey subclass

  - by user2971104

  I'm new in java and J-monkey and I'm trying to make a java game so for the Menu I have made a enum so I can Switch between any of my State but I want to keep the main file shorter so it can be easily to read so I'm making subclass the problem is that when run the game it give me an error that say "Uncaught exception thrown in Thread[LWJGL Renderer Thread,5,main] NullPointerException" I think this problem has to be something whit the pipeline Here is the code of my main file: package mygame; import com.jme3.app.SimpleApplication; import com.jme3.font.BitmapText; import com.jme3.material.Material; import com.jme3.math.ColorRGBA; import com.jme3.math.Vector3f; import com.jme3.renderer.RenderManager; import com.jme3.scene.Spatial; import com.jme3.scene.Geometry; import com.jme3.input.*; import com.jme3.input.controls.*; public class Main extends SimpleApplication { //GameStates enum GameState{Logo, Menu, Playing, Option}; GameState gameState = GameState.Logo; //Class Variables Logo logo; public Main() { logo = new Logo(); } public static void main(String[] args) { Main app = new Main(); app.start(); } public static void logo(String[] args) { Logo app = new Logo(); app.start(); } @Override public void simpleInitApp() { //Load flyCam.setMoveSpeed(20); if(gameState == GameState.Logo){ logo.simpleInitApp(); } } @Override public void simpleUpdate(float tpf) { } @Override public void simpleRender(RenderManager rm) { //TODO: add render code //Load if(gameState == GameState.Logo) { } } } And here is my Logo subclass: package mygame; import com.jme3.app.SimpleApplication; import com.jme3.renderer.RenderManager; import com.jme3.scene.Spatial; public class Logo extends SimpleApplication { @Override public void simpleInitApp() { Spatial Logo_Model = assetManager.loadModel("Models/Teapot/Logo.obj"); rootNode.attachChild(Logo_Model); } public void simpleRender(RenderManager rm) { //Load } }

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• Issues with hard disk secure erase

  - by John Watson

  I want to completely wipe all the data and both OSes (Ubuntu and Windows 7) from my hard drive. I tried DBAN but it gives me an error and does not run. I am looking for an alternative. After reading some articles online, I came to know that, using a Linux live CD, it can be done using either of following commands. a) sudo dd if=/dev/zero of=/dev/sda b) sudo shred -vfz -n 1 /dev/sda My questions are 1) Which option (a or b) is more secure (wipes everything) and faster? 2) Does either of the options damage the hard drive or anything? I want to use hard drive again i.e. installing Windows and Ubuntu again.

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• In Ubuntu I make changes to php.ini but nothing happens

  - by MrAn3

  Hi, Apache with php works well, but none of the changes I make in php.ini have effect, I've even delete all the contents of the file, then restart Apache, and run phpinfo() and surprisingly everything continues working well. The file I'm editing is the one that appears in the phpinfo() like "Loaded Configuration File". (/etc/php5/apache2/php.ini) P.S. I'm running Ubuntu 9.04 and PHP 5.2 Thanks in advance. More Details: I'm restarting with sudo /etc/init.d/apache2 restart, I've also tried sudo /etc/init.d/apache2 stop, and then start, at restarting I get: Restarting web server apache2 apache2: Could not reliably determine the server's fully qualified domain name, using 127.0.1.1 for ServerName ... waiting apache2: Could not reliably determine the server's fully qualified domain name, using 127.0.1.1 for ServerName [ OK ] "which php" did not produce any results. My installation of PHP was done using Synaptic Package Manger, choosing "Mark Packages by task" and then LAMP server. I don't have any clue of what to do...

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• How to run a restricted set of programs with Administrator privileges without giving up Admin acces (Win7 Pro)

  - by frLich

  I have a shared system, running Windows7 X64, restricted to a 'standard user' with no password. Not everyone who has access to the system has the administrator password. This works rather well, except for some applications - specially the unlock-applications for encrypted hard drives/USB flash drives. The specific ones either require Administrator access (eg. Seagate Blackarmor) or simply fail without it -- since these programs are sending raw commands to a device, this is to be expected. I would like to be able to add the hashes of these particular programs to a whitelist, and have them run as administrator without needing any prompts. Since these are by definition on removable media, I can't simply use a filename or even a path. One of the users who shares the system can be considered 'crafty', so anything which temporarily grants administrator rights to an user account is certain to cause problems. What i'd like to be able to do: 1) Create an admin account that can only run programs from a whitelist (or, failing that, from a directory) I can't find a good way to do this: As far as I can tell, SRP applies equally to ALL users? Even if I put a "Deny" token on all directories on the system, such that new directories would inherit it, it could still potentially run things from the mounted USB devices. I also don't know whether it's possible to create a new directory that DOESN'T inherit from the parent, that would lake the deny token, and provide admin access. 2) Find a lightweight service that will run these programs in its local context Windows7 seems to block cross-privilege level communication by default, and I haven't found such for windows 7. One example seems to be "sudo" (http://pages.cpsc.ucalgary.ca/~nfriess/sudo/) but because it uses a WLNOTIFY hook, it won't work under Vista nor Windows7 Non-Solutions: - RunAs: Requires administrator password! (but everyone calls it "sudo" anyway) - RunAs /savecred: Nice idea, but appears to be completely insecure. - RUNASSPC - Same concept as RunAs, uses "encrypted" files with credentials, but checks in user-space. - Scheduled Tasks - "Fixed" permissions make this difficult, and doesn't support interactive processes even if it did. - SuRun: From Google: "Surun uses its own Windows service that adds the user to the group of administrators during program start and removes him automatically from that group again"

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• Unable to change IP address for eth0 without restart in Ubuntu

  - by Rodnower

  I have Ubuntu 12.04.1 installed. I tried to change the IP address of the interface eth0 in /etc/network/interfaces from 192.168.1.3 to 192.168.1.4 auto lo iface lo inet loopback pre-up iptables-restore < /etc/iptables.up.rules auto eth0 iface eth0 inet static address 192.168.1.4 gateway 192.168.1.1 netmask 255.255.255.0 network 192.168.1.0 broadcast 192.168.1.255 sudo service networking status When I issue: sudo service networking restart I get this response: stop: Unknown instance: networking stop/waiting And IP remains 192.168.1.3: eth0 Link encap:Ethernet HWaddr 00:1e:33:71:cd:a4 inet addr:192.168.1.3 Bcast:192.168.1.255 Mask:255.255.255.0 inet6 addr: fe80::21e:33ff:fe71:cda4/64 Scope:Link UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1 RX packets:3861 errors:0 dropped:0 overruns:0 frame:0 TX packets:3291 errors:0 dropped:0 overruns:0 carrier:0 collisions:0 txqueuelen:1000 RX bytes:3423285 (3.4 MB) TX bytes:521854 (521.8 KB) Interrupt:45 Base address:0x4000 Only after restart does the IP change. Any ideas?

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• What does directory permission 'S' mean? (not lower case, but in upper case)

  - by Howard Guo

  I downloaded Eclipse, uncompressed it, did a few other things and all sudden I notice this interesting behaviour: ^_^ ~/Downloads > sudo chmod 0000 eclipse/ ^_^ ~/Downloads > stat eclipse/ File: 'eclipse/' Size: 4096 Blocks: 8 IO Block: 4096 directory Device: 801h/2049d Inode: 529725 Links: 9 Access: (2000/d-----S---) Uid: ( 0/ root) Gid: ( 0/ root) Access: 2012-11-22 19:54:57.752017352 +1100 Modify: 2012-09-20 18:16:26.000000000 +1000 Change: 2012-11-22 20:07:49.354016510 +1100 Birth: - ^_^ ~/Downloads > sudo chmod 0755 eclipse/ ^_^ ~/Downloads > stat eclipse/ File: 'eclipse/' Size: 4096 Blocks: 8 IO Block: 4096 directory Device: 801h/2049d Inode: 529725 Links: 9 Access: (2755/drwxr-sr-x) Uid: ( 0/ root) Gid: ( 0/ root) Access: 2012-11-22 19:54:57.752017352 +1100 Modify: 2012-09-20 18:16:26.000000000 +1000 Change: 2012-11-22 20:08:19.042016478 +1100 Birth: - What does 'S' permission mean to a directory? And why it doesn't let me get rid of it? Thanks.

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• Execute script before shutting down in Ubuntu

  - by juanefren

  When I shut down my computer I want to show some pending tasks that I have to do before leaving the office... I did a local application to manage those tasks, so basically I just want to run a command, and shut down after I kill the app executed. I have already tried with these options: * /etc/gdm/PostSession/Default -- this works only when I select LogOut option instead Shutdown. * /etc/rc0.d/K01mycustomscript -- execute script after X is killed * $HOME/.bash_logout -- This looks like does nothing. * ./app-to-run && sudo shutdown -h now -- Don't like it for 2 reasons, prompts for sudo password, and can't use my laptop shutdown button. I am using Ubuntu 10.04

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• Linux- passwordless ssh from system (root) script

  - by redmoskito

  What's the easiest way to have a system script (running as root) execute remote commands over ssh? I've written some scripts that execute commands remotely via ssh, and they work great when I run them as myself, as I've set up ssh-agent and keys for passwordless login. I'd like to call these when my laptop docks and undocks. I've been successful at running arbitrary scripts when docking/undocking, but since the ACPI event scripts run as root, trying to run my ssh script fails during authentication. I tried using sudo with the -u and -i flags to simulate running the script as my user, e.g.: sudo -u redmoskito -i /home/redmoskito/bin/remote_command which successfully finds my private key and tries to use it, but the ssh-agent credentials are still missing, so it still needs my passphrase.

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• How to install pgAdmin

  - by Kifsif

  I use Ubuntu 12.04 64 bit. At first I installed pgAdmin through Software Center. But it seemed old. So, I decided to uninstal it. Then I downloaded graphic installer for PostgresQL. sudo ./postgresql-9.2.1-1-linux-x64.run I was warned that a previous version of pgAdmin is found, it will be upgraded but I'll have to restart the server. Well, installation process worked. Then I turned out in terminal again. I restarted the server /etc/init.d$ sudo ./postgresql-9.2 restart /opt/PostgreSQL/9.2/pgAdmin3/bin$ ./pgadmin3 The answer is: The program 'pgadmin3' is currently not installed. So, I can't find my pgAdmin to launch it. Could you suggest me anything?

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