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  • Convert Chunk of Data into Tabular Format Using Perl

    - by neversaint
    I have a data that looks like this 1:SRX000566 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 4 runs, 62.7M spots, 2.1G bases Run #1: SRR002055, 11373440 spots, 375323520 bases Run #2: SRR002063, 22995209 spots, 758841897 bases Run #3: SRR005091, 13934766 spots, 459847278 bases Run #4: SRR005096, 14370900 spots, 474239700 bases 2:SRX000565 Submitter: WoldLab Study: RNASeq expression profiling for ENCODE project(SRP000228) Sample: Human cell line GM12878(SRS000567) Instrument: Solexa 1G Genome Analyzer Total: 3 runs, 51.2M spots, 1.7G bases Run #1: SRR002052, 12607931 spots, 416061723 bases Run #2: SRR002054, 12880281 spots, 425049273 bases Run #3: SRR002060, 25740337 spots, 849431121 bases 3:SRX012407 Submitter: GEO Study: GSE17153: Illumina sequencing of small RNAs from C. elegans embryos(SRP001363) Sample: Caenorhabditis elegans(SRS006961) Instrument: Illumina Genome Analyzer II Total: 1 run, 3M spots, 106.8M bases Run #1: SRR029428, 2965597 spots, 106761492 bases Is there a compact way to convert them into tabular format (tab separated). Hence 1 entry/row per chunk. In these case 3 rows. I tried this but doesn't seem to work. perl -laF/\n/ -000ne"print join chr(9),@F" myfile.txt

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  • ASP.NET MVC3 Custom Membership Provider - The membership provider name specified is invalid.

    - by David Lively
    I'm implementing a custom membership provider, and everything seems to go swimmingly until I create a MembershipUser object. At that point, I receive the error: The membership provider name specified is invalid. Parameter name: providerName In web.config the membership key is <membership defaultProvider="MembersProvider"> <providers> <clear/> <add name="MembersProvider" type="Members.Providers.MembersProvider" connectionStringName="ApplicationServices" enablePasswordRetrieval="false" enablePasswordReset="true" requiresQuestionAndAnswer="false" requiresUniqueEmail="false" maxInvalidPasswordAttempts="5" minRequiredPasswordLength="6" minRequiredNonalphanumericCharacters="0" passwordAttemptWindow="10" applicationName="DeviceDatabase" /> </providers> </membership> When creating the MembershipUser object from my custom User class: public static MembershipUser ToMembershipUser(User user) { MembershipUser member = new MembershipUser ("MembersProvider" , user.Name , user.Id , user.EmailAddress , user.PasswordQuestion , user.Comment , user.IsApproved , user.IsLockedOut , user.DateCreated , user.LastLoginDate ?? DateTime.MinValue , user.LastActivityDate ?? DateTime.MinValue , user.LastPasswordChangedDate ?? DateTime.MinValue , user.LastLockoutDate ?? DateTime.MinValue ); return member; } (I realize I could probably just inherit my User class from MembershipUser, but it's already part of an existing class hierarchy. I honestly think this is the first time I've encountered a legitimate need for for multiple inheritance!) My feeling is that the new MembershipUser(...) providerName parameter is supposed to match what's set in web.config, but, since they match already, I'm at a loss as to how to proceed. Is there a convenient way to get the name of the active membership provider in code? I'm starting to think that using the built-in membership system is overkill and more trouble than it's worth. Edit Not sure if it's relevant, but the custom membership provider class is in a class library, not the main WAP project. Update Here's the contents of the System.Web.Security.Membership.Provider object as show in the VS2010 command window: >eval System.Web.Security.Membership.Provider {Members.Providers.MembersProvider} [Members.Providers.MembersProvider]: {Members.Providers.MembersProvider} base {System.Configuration.Provider.ProviderBase}: {Members.Providers.MembersProvider} ApplicationName: null EnablePasswordReset: true EnablePasswordRetrieval: false MaxInvalidPasswordAttempts: 5 MinRequiredNonAlphanumericCharacters: 0 MinRequiredPasswordLength: 6 PasswordAttemptWindow: 10 PasswordFormat: Function evaluation was aborted. PasswordStrengthRegularExpression: Cannot evaluate expression because debugging information has been optimized away . RequiresQuestionAndAnswer: Cannot evaluate expression because debugging information has been optimized away . RequiresUniqueEmail: Cannot evaluate expression because debugging information has been optimized away .

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  • Code Golf: Evaluating Mathematical Expressions

    - by Noldorin
    Challenge Here is the challenge (of my own invention, though I wouldn't be surprised if it has previously appeared elsewhere on the web). Write a function that takes a single argument that is a string representation of a simple mathematical expression and evaluates it as a floating point value. A "simple expression" may include any of the following: positive or negative decimal numbers, +, -, *, /, (, ). Expressions use (normal) infix notation. Operators should be evaluated in the order they appear, i.e. not as in BODMAS, though brackets should be correctly observed, of course. The function should return the correct result for any possible expression of this form. However, the function does not have to handle malformed expressions (i.e. ones with bad syntax). Examples of expressions: 1 + 3 / -8 = -0.5 (No BODMAS) 2*3*4*5+99 = 219 4 * (9 - 4) / (2 * 6 - 2) + 8 = 10 1 + ((123 * 3 - 69) / 100) = 4 2.45/8.5*9.27+(5*0.0023) = 2.68... Rules I anticipate some form of "cheating"/craftiness here, so please let me forewarn against it! By cheating, I refer to the use of the eval or equivalent function in dynamic languages such as JavaScript or PHP, or equally compiling and executing code on the fly. (I think my specification of "no BODMAS" has pretty much guaranteed this however.) Apart from that, there are no restrictions. I anticipate a few Regex solutions here, but it would be nice to see more than just that. Now, I'm mainly interested in a C#/.NET solution here, but any other language would be perfectly acceptable too (in particular, F# and Python for the functional/mixed approaches). I haven't yet decided whether I'm going to accept the shortest or most ingenious solution (at least for the language) as the answer, but I would welcome any form of solution in any language, except what I've just prohibited above! My Solution I've now posted my C# solution here (403 chars). Update: My new solution has beaten the old one significantly at 294 chars, with the help of a bit of lovely regex! I suspected that this will get easily beaten by some of the languages out there with lighter syntax (particularly the funcional/dynamic ones), and have been proved right, but I'd be curious if someone could beat this in C# still. Update I've seen some very crafty solutions already. Thanks to everyone who has posted one. Although I haven't tested any of them yet, I'm going to trust people and assume they at least work with all of the given examples. Just for the note, re-entrancy (i.e. thread-safety) is not a requirement for the function, though it is a bonus. Format Please post all answers in the following format for the purpose of easy comparison: Language Number of characters: ??? Fully obfuscated function: (code here) Clear/semi-obfuscated function: (code here) Any notes on the algorithm/clever shortcuts it takes.

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  • Mocking Sort With Mocha

    - by josephmate
    How can I mock an array's sort expect a lambda expression? This is a trivial example of my problem: # initializing the data l = lambda { |a,b| a <=> b } array = [ 1, 2, 3, 4, 5 ] sorted_array = [ 2, 3, 8, 9, 1] # I expect that sort will be called using the lambda as a parameter array.expects(:sort).with( l ).returns( sorted_array ) # perform the sort using the lambda expression temp = array.sort{|a,b| l.call(a,b) } Now, at first I expected that this would work; however, I got the following error: - expected exactly once, not yet invoked: [ 1, 2, 3, 4, 5 ].sort(#<Proc:0xb665eb48>) Is there a way to do what I am looking for? Cheers, Joseph

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  • Using numeric_limits::max() in constant expressions

    - by FireAphis
    Hello, I would like to define inside a class a constant which value is the maximum possible int. Something like this: class A { ... static const int ERROR_VALUE = std::numeric_limits<int>::max(); ... } This declaration fails to compile with the following message: numeric.cpp:8: error: 'std::numeric_limits::max()' cannot appear in a constant-expression numeric.cpp:8: error: a function call cannot appear in a constant-expression I understand why this doesn't work, but two things look weird to me: It seems to me a natural decision to use the value in constant expressions. Why did the language designers decide to make max() a function thus not allowing this usage? The spec claims in 18.2.1 that For all members declared static const in the numeric_limits template, specializations shall define these values in such a way that they are usable as integral constant expressions. Doesn't it mean that I should be able to use it in my scenario and doesn't it contradict the error message? Thank you.

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  • microsoft local report page width problem when table column hide

    - by Hamid
    I create some dynamic report. by default, create a table with all available field and hidden by expression, therefore column hide when user want (by checkbox in aspx page) problem: my report is "right to left" therefore when hiding some column, report must shown from right, but as you know, when report render, it create table column from left, my question is how to render report from right ???? for solving this problem i create some column without data and set hidden expression != main column hidden state, therefore my problem solved but found another problem, report width!!! because page width really must 8.5in but when hiding some column, page Width not decrease and remain 15in!!! how to solve this problem ??? Please help me, Thanks in advanced

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  • Func<sometype,bool> to Func<T,bool>

    - by user175528
    If i have: public static Func<SomeType, bool> GetQuery() { return a => a.Foo=="Bar"; } and a generic version public static Func<T, bool> GetQuery<T>() { return (Func<T,bool>)GetQuery(); } how can I do the case? The only way I have found so far is to try and combine it with a mock function: Func<T, bool> q=a => true; return (Func<T, bool>)Delegate.Combine(GetQuery(), q); I know how to do that with Expression.Lambda, but I need to work with plain functions, not expression trees

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  • Regex matching into multiple groups per line?

    - by dmose
    I'm trying to come up with a regex to be able to parse the following type of strings into groups. <link rel="alternate" type="application/rss+xml" title="[!PageTitle!]" href="[!SiteRoot!]/feed.xml" /> My regular expression is: \[\!(.+)\!\] The problem with this expression is that it seems to pull it all into 1 group: Found 1 match: "[!PageTitle!]" href="[!SiteRoot!]" has 1 group: 1. "PageTitle!]" href="[!SiteRoot" I want dont want the regex to continue...am I missing a boundary? Ideally I want it to find 2 groups, [!PageTitle!] and [!SiteRoot!]

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  • Hiding Table Rows

    - by David Stein
    I have a table that I'm using to show details from the line items of a quote. I want to hide a particular row depending on the value of the field in it. The expression I've tried is to set the row visibility to: =IIF(isnothing(First(Fields!NEW_PRICEBREAKS.Value, "QuoteDetail")),true,false) When I run the query from the dataset "Null" returns for NEW_PRICEBREAKS for most of the records. Also, when I expanded the row with another column with this expression: =IIF(isnothing(First(Fields!NEW_PRICEBREAKS.Value, "QuoteDetail")),"is nothing","not nothing") I see "not nothing" repeated over and over again. I've attempted to use TRIM inside of the isnothing to remove spaces and it still doesn't work. Also, the sql data type for NEW_PRICEBREAKS is nvarchar(MAX). Any ideas how I can suppress this row correctly?

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  • #if 0 as a define

    - by valerio
    I need a way to define a FLAGS_IF macro (or equivalent) such that FLAGS_IF(expression) <block_of_code> FLAGS_ENDIF when compiling in debug (e.g. with a specific compiler switch) compiles to if (MyFunction(expression)) { <block_of_code> } whereas in release does not result in any instruction, just as it was like this #if 0 <block_of_code> #endif In my ignorance on the matter of c/c++ preprocessors i can't think of any naive way (since #define FLAGS_IF(x) #if 0 does not even compile) of doing this, can you help? I need a solution that: Does not get messed up if */ is present inside <block_of_code> Is sure to generate 0 instructions in release even inside inline functions at any depth (i guess this excludes if (false){<block_of_code>} right?) Is standard compliant if possible Thank you

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  • Working with Hibernate Queries

    - by jschoen
    I am new to hibernate queries, and trying to get a grasp on how everything works. I am using Hibernate 3 with Netbeans 6.5. I have a basic project set up and have been playing around with how to do everything. I started with essentially a search query. Where the user can enter values into one or more fields. The table would be Person with the columns first_name, middle_name, last_name for the sake of the example. The first way I found was to have a method that took firstName, middleName, and lastName as parameters: Session session = HibernateUtil.getSessionFactory().getCurrentSession(); Transaction tx = session.beginTransaction(); String query = "from Person where (first_name = :firstName or :firstName is null) "+ "and (middle_name = :middleName or :middleName is null) " "and (last_name = :lastname or :lastName is null)"; Query q = session.createQuery(query); q.setString("firstName", firstName); q.setString("middleName", middleName); q.setString("lastName", lastName); List<Person> results = (List<Person>) q.list(); This did not sit well with me, since it seemed like I should not have to write that much, and well, that I was doing it wrong. So I kept digging and found another way: Session session = HibernateUtil.getSessionFactory().getCurrentSession(); Transaction tx = session.beginTransaction(); Criteria crit = session.createCriteria(Person.class); if (firstName != null) { crit.add(Expression.ge("firstName", firstName); } if (middleName != null) { crit.add(Expression.ge("middleName", middleName); } if (lastName != null) { crit.add(Expression.ge("lastName", lastName); } List<Person> results = (List<Person>) crit.list(); So what I am trying to figure out is which way is the preferred way for this type of query? Criteria or Query? Why? I am guessing that Criteria is the preferred way and you should only use Query when you need to write it by hand for performance type reasons. Am I close?

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  • Detect WebKit Version 525 and Below With RegEx

    - by Jay
    I'm no good at Regular Expressions, really! I would like to specifically detect WebKit browsers below version 525. I have a regular expression [/WebKit\/[\d.]+/.exec(navigator.appVersion)] that correctly returns WebKit/5….…, really, I'd like it to return only the version number, but if the browser isn't WebKit, return null, or better still 0. For example, if the browser was Trident, Presto or Gecko, return null, whereas if the browser is WebKit, return it's version number. To clarify, I would like the regular expression to check if navigator.appVersion contains WebKit and if it does not, return null, if it does, return the version number. I appreciate all your help! Please let's keep this focused, let's not flirt with jQuery or the sort, it's overkill in this scenario.

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  • How to do an fetch request with expressions like this on the iPhone?

    - by dontWatchMyProfile
    The documentation has an example on how to retrieve simple values only, rather than managed objects. This remembers a lot SQL using aliases and functions to only retrieve calculated values. So, actually pretty geeky stuff. To get the minimum date from a bunch of records, this is used on the mac: NSFetchRequest *request = [[NSFetchRequest alloc] init]; NSEntityDescription *entity = [NSEntityDescription entityForName:@"Event" inManagedObjectContext:context]; [request setEntity:entity]; // Specify that the request should return dictionaries. [request setResultType:NSDictionaryResultType]; // Create an expression for the key path. NSExpression *keyPathExpression = [NSExpression expressionForKeyPath:@"creationDate"]; // Create an expression to represent the minimum value at the key path 'creationDate' NSExpression *minExpression = [NSExpression expressionForFunction:@"min:" arguments:[NSArray arrayWithObject:keyPathExpression]]; // Create an expression description using the minExpression and returning a date. NSExpressionDescription *expressionDescription = [[NSExpressionDescription alloc] init]; // The name is the key that will be used in the dictionary for the return value. [expressionDescription setName:@"minDate"]; [expressionDescription setExpression:minExpression]; [expressionDescription setExpressionResultType:NSDateAttributeType]; // Set the request's properties to fetch just the property represented by the expressions. [request setPropertiesToFetch:[NSArray arrayWithObject:expressionDescription]]; // Execute the fetch. NSError *error; NSArray *objects = [managedObjectContext executeFetchRequest:request error:&error]; if (objects == nil) { // Handle the error. } else { if ([objects count] > 0) { NSLog(@"Minimum date: %@", [[objects objectAtIndex:0] valueForKey:@"minDate"]; } } [expressionDescription release]; [request release]; Nice, I though - but having a deep look into NSExpression -expressionForFunction:arguments: it turns out that iPhone OS does NOT support the min: function. Well, probably there's a nifty way to use an own function for this kind of stuff on the iPhone as well? Because on thing I'm already worrying about is, how I'm gonna sort a table based on the calculated distance of targets on a map (location-based stuff).

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  • If you're not supposed to use Regular Expressions to parse HTML, then how are HTML parsers written?

    - by Andy E
    I see questions every day asking how to parse or extract something from some HTML string and the first answer/comment is always "Don't use RegEx to parse HTML, lest you feel the wrath!" (that last part is sometimes omitted). This is rather confusing for me, I always thought that in general, the best way to parse any complicated string is to use a regular expression. So how does a HTML parser work? Doesn't it use regular expressions to parse. One particular argument for using a regular expression is that there's not always a parsing alternative (such as JavaScript, where DOMDocument isn't a universally available option). jQuery, for instance, seems to manage just fine using a regex to convert a HTML string to DOM nodes. Not sure whether or not to CW this, it's a genuine question that I want to be answered and not really intended to be a discussion thread.

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  • Return Count from Netflix oData Service When the LINQ Count() Method Doesn't Work

    - by Craig Shoemaker
    Is there a way to use a LINQ expression to request a Count query from the Netflix oData service? The Netflix documentation shows that you can return counts by appending $count to a request for a collection, but a URL like this: http://netflix.cloudapp.net/Catalog/Genres/$count Is not generated from an expression like this: var count = (from g in catalog.Genres select g).Count(); The above code returns an error saying that the Count method is not supported. Is there a way to do this in LINQ, or do I just need to make WebClient request to get the value?

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  • ANTLR, optional ';' in JavaScript

    - by vava
    I'm just playing with ANTLR and decided to try parsing JavaScript with it. But I hit the wall in dealing with optional ';' in it, where statement end is marked by newline instead. Can it be done in some straightforward way? Just a simple grammar example that doesn't work grammar optional_newline; def : statements ; statements : statement (statement)* ; statement : expression (';' | '\n') ; expression : ID | INT | 'var' ID '=' INT ; ID : ('a'..'z'|'A'..'Z'|'_') ('a'..'z'|'A'..'Z'|'0'..'9'|'_')* ; INT : '0'..'9'+ ; WS : ( ' ' | '\t' | '\r' | '\n') {$channel=HIDDEN;} ; and I want to be able to parse this (which can be parsed by JavaScript parsers) var i = 10 10; PS: I don't want to put WS in parser rules, I would be much happier if lexer just get rid of those.

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  • Total of unknown categories in SSRS 2005

    - by Lijo
    Hi, I am working with SSRS2005. I have requirement to display total in the footer. We have to display the total of each category. What I used to do is, write expression for all category names and hide those totals that are not having any value in the current selection. Mango Count = sum(iif(fields!Category.Value = “Mango”,0,1)) Apple Count = sum(iif(fields!Category.Value = “Apple”,0,1)) However, in the new requirement, I don’t have the knowledge of categories. It could be any number of categories. Is it possible to write an expression for this? Please help Thanks Lijo Cheeran Joseph

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  • Html.DescriptionFor<T>

    - by Stacey
    I'm trying to emulate the Html Helper for "LabelFor" to work with the [Description] Attribute. I'm having a lot of trouble figuring out how to get the property from the helper though. This is the current signature... class Something { [Description("Simple Description")] [DisplayName("This is a Display Name, not a Description!")] public string Name { get; set; } } public static MvcHtmlString DescriptionFor<TModel, TValue>(this HtmlHelper<TModel> html, Expression<Func<TModel, TValue>> expression);

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  • Emacs Lisp: How to use ad-get-arg and ad-get-args?

    - by RamyenHead
    I'm not sure I am using ad-get-args and ad-get-arg right. For example, the following code doesn't work. (defun my-add (a b) (+ a b)) (defadvice my-add (after my-log-on activate) (message "my-add: %s" (ad-get-args))) (my-add 1 2) The last expression causes an error: Debugger entered--Lisp error: (void-function ad-get-args). The following doesn't work either. (defun my-substract (a b) (- a b)) (defadvice my-substract (around my-log-on activate) (message "my-substract: %s" (ad-get-arg 0)) (ad-do-it)) (my-substract 10 1) The defadvice gives a warning: Warning: `(setq ad-return-value (ad-Orig-my-substract a b))' is a malformed function And the last expression gives an error: Debugger entered--Lisp error: (invalid-function (setq ad-return-value (ad-Orig-my-substract a b))) (setq ad-return-value (ad-Orig-my-substract a b))() I was trying to use defadvice to watch start-process arguments for debugging purposes and I found my way of using ad-get-arg didn't work.

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  • math syntax checker written in python

    - by neurino
    All I need is to check, using python, if a string is a valid math expression or not. For simplicity let's say I just need + - * / operators (+ - as unary too) with numbers and nested parenthesis. I add also simple variable names for completeness. So I can test this way: test("-3 * (2 + 1)") #valid test("-3 * ") #NOT valid test("v1 + v2") #valid test("v2 - 2v") #NOT valid ("2v" not a valid variable name) I tried pyparsing but just trying the example: "simple algebraic expression parser, that performs +,-,*,/ and ^ arithmetic operations" I get passed invalid code and also trying to fix it I always get wrong syntaxes being parsed without raising Exceptions just try: >>>test('9', 9) 9 qwerty = 9.0 ['9'] => ['9'] >>>test('9 qwerty', 9) 9 qwerty = 9.0 ['9'] => ['9'] both test pass... o_O Any advice?

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