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  • Wireshark Dissector: How to Identify Missing UDP Frames?

    - by John Dibling
    How do you identify missing UDP frames in a custom Wireshark dissector? I have written a custom dissector for the CQS feed (reference page). One of our servers gaps when receiving this feed. According to Wireshark, some UDP frames are never received. I know that the frames were sent because all of our other servers are gap-free. A CQS frame consists of multiple messages, each having its own sequence number. My custom dissector provides the following data to Wireshark: cqs.frame_gaps - the number of gaps within a UDP frame (always zero) cqs.frame_first_seq - the first sequence number in a UDP frame cqs.frame_expected_seq - the first sequence number expected in the next UDP frame cqs.frame_msg_count - the number of messages in this UDP frame And I am displaying each of these values in custom columns, as shown in this screenshot: I tried adding code to my dissector that simply saves the last-processed sequence number (as a local static), and flags gaps when the dissector processes a frame where current_sequence != (previous_sequence + 1). This did not work because the dissector can be called in random-access order, depending on where you click in the GUI. So you could process frame 10, then frame 15, then frame 11, etc. Is there any way for my dissector to know if the frame that came before it (or the frame that follows) is missing? The dissector is written in C. (See also a companion post on serverfault.com)

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  • All words in a trie data-structure

    - by John Smith
    I'm trying to put all words in a trie in a string, a word is detonated by the eow field being true for a certain character in the trie data structure, hence a trie can could have letters than lead up to no word, for ex "abc" is in the trie but "c"'s eow field is false so "abc" is not a word Here is my Data structure struct Trie { bool eow; //when a Trie field isWord = true, hence there is a word char letter; Trie *letters[27]; }; and here is my attemped print-all function, basically trying to return all words in one string seperated by spaces for words string printAll( string word, Trie& data) { if (data.eow == 1) return word + " "; for (int i = 0; i < 26; i++) { if (data.letters[i] != NULL) printAll( word + data.letters[i]->letter, *(data.letters[i])); } return ""; } Its not outputting what i want, any suggestions?

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  • Calculating a Sample Covariance Matrix for Groups with plyr

    - by John A. Ramey
    I'm going to use the sample code from http://gettinggeneticsdone.blogspot.com/2009/11/split-apply-and-combine-in-r-using-plyr.html for this example. So, first, let's copy their example data: mydata=data.frame(X1=rnorm(30), X2=rnorm(30,5,2), SNP1=c(rep("AA",10), rep("Aa",10), rep("aa",10)), SNP2=c(rep("BB",10), rep("Bb",10), rep("bb",10))) I am going to ignore SNP2 in this example and just pretend the values in SNP1 denote group membership. So then, I may want some summary statistics about each group in SNP1: "AA", "Aa", "aa". Then if I want to calculate the means for each variable, it makes sense (modifying their code slightly) to use: > ddply(mydata, c("SNP1"), function(df) data.frame(meanX1=mean(df$X1), meanX2=mean(df$X2))) SNP1 meanX1 meanX2 1 aa 0.05178028 4.812302 2 Aa 0.30586206 4.820739 3 AA -0.26862500 4.856006 But what if I want the sample covariance matrix for each group? Ideally, I would like a 3D array, where the I have the covariance matrix for each group, and the third dimension denotes the corresponding group. I tried a modified version of the previous code and got the following results that have convinced me that I'm doing something wrong. > daply(mydata, c("SNP1"), function(df) cov(cbind(df$X1, df$X2))) , , = 1 SNP1 1 2 aa 1.4961210 -0.9496134 Aa 0.8833190 -0.1640711 AA 0.9942357 -0.9955837 , , = 2 SNP1 1 2 aa -0.9496134 2.881515 Aa -0.1640711 2.466105 AA -0.9955837 4.938320 I was thinking that the dim() of the 3rd dimension would be 3, but instead, it is 2. Really this is a sliced up version of the covariance matrix for each group. If we manually compute the sample covariance matrix for aa, we get: [,1] [,2] [1,] 1.4961210 -0.9496134 [2,] -0.9496134 2.8815146 Using plyr, the following gives me what I want in list() form: > dlply(mydata, c("SNP1"), function(df) cov(cbind(df$X1, df$X2))) $aa [,1] [,2] [1,] 1.4961210 -0.9496134 [2,] -0.9496134 2.8815146 $Aa [,1] [,2] [1,] 0.8833190 -0.1640711 [2,] -0.1640711 2.4661046 $AA [,1] [,2] [1,] 0.9942357 -0.9955837 [2,] -0.9955837 4.9383196 attr(,"split_type") [1] "data.frame" attr(,"split_labels") SNP1 1 aa 2 Aa 3 AA But like I said earlier, I would really like this in a 3D array. Any thoughts on where I went wrong with daply() or suggestions? Of course, I could typecast the list from dlply() to a 3D array, but I'd rather not do this because I will be repeating this process many times in a simulation. As a side note, I found one method (http://www.mail-archive.com/[email protected]/msg86328.html) that provides the sample covariance matrix for each group, but the outputted object is bloated. Thanks in advance.

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  • UNIX-style RegExp Replace running extremely slowly under windows. Help? EDIT: Negative lookahead ass

    - by John Sullivan
    I'm trying to run a unix regEXP on every log file in a 1.12 GB directory, then replace the matched pattern with ''. Test run on a 4 meg file is took about 10 minutes, but worked. Obviously something is murdering performance by several orders of magnitude. Find: ^(?!.*155[0-2][0-9]{4}\s.*).*$ -- NOTE: match any line NOT starting 155[0-2]NNNN where in is a number 0-9. Replace with: ''. Is there some justifiable reason for my regExp to take this long to replace matching text, or is the program I am using (this is windows / a program called "grepWin") most likely poorly optimized? Thanks. UPDATE: I am noticing that searching for ^(155[0-2]).$ takes ~7 seconds in a 5.6 MB file with 77 matches. Adding the Negative Lookahead Assertion, ?=, so that the regExp becomes ^(?!155[0-2]).$ is causing it to take at least 5-10 minutes; granted, there will be thousands and thousands of matches. Should the negative lookahead assertion be extremely detrimental to performance, and/or a large quantity of matches?

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  • I want to combine my www and non www and keep the link jucie from both.

    - by John Ray
    My website shows up for some keywords in the www and some in the non www. Seaquake shows more links to the non www version. It is a PR2 either way. I would like to combine the link juice of the two versions into the non www version. Does anyone know the best way to combine the two and keep the link juice of both. It is as simple as a 301 redirect and if so does the 301 need to be handled in any specific way.

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  • Alternative to BerkeleyDB?

    - by John
    I'm looking for a dbm-like library that I can use in place of Berkeley DB, which I'm currently using. My main reason for switching is the licensing fees for BDB are pretty high (free for open source apps, but my employer does not want to open source this particular app for various reasons). I've looked briefly at qdbm but it doesn't look like it will fill my needs -- lots of keys (several million) and large data items ( 1-5 megabytes). Before I continue my search I figured I'd ask because it seems there are tons of dbm-like libraries out there.

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  • Benefits of migrating my work to a new web development framework?

    - by John
    When I first started programming with PHP, I was ignorant of other php frameworks (like code igniter, cake php, etc...). So I fell into the trap of re-inventing wheels, which had the benefit of being "fun" and "educational". Overtime, I discovered other open source products that I found useful, like smarty templating engine, jquery library, tcpdf library, fdf etc...so I started bundling these technologies along with things I've built over the years into a LAMP development framework to make life easier for myself. This pass year, I've been having fun developing on the code igniter framework. It does many of the things I do in my framework. Coding in CI feels natural because the MVC and ORM feels similar to the MVC and ORM of my framework. So now I'm contemplating migrating a lot of the plugins in my framework over to CI. The pros and cons I can think of for such a project are: Pros: benefit from the vast community of CI developers lots of other developers will be familiar with it better documentation Cons: I've built a lot of useful plugins against my own framework, and it will take a lot of time to move even just the essential ones at the moment, I still, work faster against my own framework than CI, just because I'm more familiar with it even if I did migrate to CI, there will always be newer and better frameworks in the near future, and i'll be contemplating this scenario again So my question is the following: perhaps I should leave my old framework as is, and for each new project I receive, I make a decision on whether the requirements are best served by developing with CI or my own framework. Is this the right approach?

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  • Set title of SplitViewController

    - by John
    I am using the SplitViewController template. How do I set the title on the topbar in the detailview? Been trying to work this out for hours. Tried simple: detailViewController.title = @"String"; but no luck. Any help appreciated. Thanks.

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  • SQL Server and Table-Valued User-Defined Function optimizations

    - by John Leidegren
    If I have an UDF that returns a table, with thousands of rows, but I just want a particular row from that rowset, will SQL Server be able to handle this effciently? SELECT * FROM dbo.MyTableUDF() WHERE ID = 1 To what extent is the query optimizer capable of reasoning about this type of query? How are Table-Valued UDFs different from traidtional views if they take no parameters? Any gotchas I should know about?

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  • What's the official Microsoft way to track counts of dynamic controls to be reconstructed upon Postback?

    - by John K
    When creating dynamic controls based on a data source of arbitrary and changing size, what is the official way to track exactly how many controls need to be rebuilt into the page's control collection after a Postback operation (i.e. on the server side during the ASP.NET page event lifecycle) specifically the point at which dynamic controls are supposed to be rebuilt? Where is the arity stored for retrieval and reconstruction usage? By "official" I mean the Microsoft way of doing it. There exist hacks like Session storage, etc but I want to know the bonafide or at least Microsoft-recommended way. I've been unable to find a documentation page stating this information. Usually code samples work with a set of dynamic controls of known numbers. It's as if doing otherwise would be tougher. Update: I'm not inquiring about user controls or static expression of declarative controls, but instead about dynamically injecting controls completely from code-behind, whether they be mine, 3rd-party or built-in ASP.NET controls.

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  • Store a byte[] stored in a SQL XML parameter to a varbinary(MAX) field in SQL Server 2005. Can it be

    - by Mikey John
    Store a byte[] stored in a SQL XML parameter to a varbinary(MAX) field in SQL Server 2005. Can it be done ? Here's my stored procedure: set ANSI_NULLS ON set QUOTED_IDENTIFIER ON GO ALTER PROCEDURE [dbo].[AddPerson] @Data AS XML AS INSERT INTO Persons (name,image_binary) SELECT rowWals.value('./@Name', 'varchar(64)') AS [Name], rowWals.value('./@ImageBinary', 'varbinary(MAX)') AS [ImageBinary] FROM @Data.nodes ('/Data/Names') as b(rowVals) SELECT SCOPE_IDENTITY() AS Id In my schema Name is of type String and ImageBinary is o type byte[].

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  • unable to get into windows 7 or ubuntu after system file back on a dual boot system

    - by John Jiang
    I installed ubuntu on my dell xps 9000 which originally has a window 7 installed. So after I did system file back up as told by windows 7 and restarted my computer, I received the following message right after restarting in the black screen: roughly like this: ubuntu grub error, " " symbol cannot be found. I was wondering how I can get access into windows 7 and uninstall ubuntu all together. I actually had the same booting problem after system backup before and the solution was to install two extra ubuntus but I'd prefer not to do that. I'd highly appreciate any help!

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  • PHP - Looking for an HTML Generator/Manager

    - by John Himmelman
    I'm trying to find a tool that I can use to generate markup programatically (non-irl word). Here is an example of what I'm trying to accomplish in pseudo-code... $htmlDoc = new HTML_Document(); $htmlDoc->setTitle('Cool Title'); $htmlDoc->addJs('some_js_file.js'); $htmlDoc->addStylesheet('some_css_file.css'); $divElement = new HTML_Element_Div(); $htmlDoc->append('body', $divElement); $output = $htmlDoc->generate(); What is the best tool for this?

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  • How can I send an automated reply to the sender and all recipients with Procmail?

    - by jchong
    I'd like to create a procmail recipe or Perl or shell script that will send an auto response to the original sender as well as anybody that was copied (either To: or cc:) on the original email. Example: [email protected] writes an email to [email protected] and [email protected] (in the To: field). Copies are sent via cc: to [email protected] and [email protected]. I'd like the script to send an auto response to the original sender ([email protected]) and everybody else that was sent a copy of the email ([email protected], [email protected], [email protected] and [email protected]). Thanks

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  • How to update a custom dependency property when the datasource list changes

    - by John
    Hi We have a user control with a custom dependency property (DP). The DP is bound to an ObservableCollection. When a new item is added to the collection programatically, the databinding does not update the target DP. Why? We think it's because, unfortunately, in our case the target is not a ListBox or ListView, but a Canvas. The DP, when changed or initialized, is supposed to draw a Shape (!) onto the Canvas, and the shape's position and size is bound to the collection item's two properties: WIDTH, LEFT. Ideally we don't want to clear the Canvas and redraw all items just becasue one has been added (or deleted). But how? So: How can the custom DP take care of drawing the shape for the new collection item? What callback do we need, at what point in time does this have to happen, and what specific MetaDataOptions might there? Also, are there any good resources out there concerning all these dependency property options. They are quite confusing. MSDN does not really help with what we're trying to do. Thanks!

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  • How Do You Profile & Optimize CUDA Kernels?

    - by John Dibling
    I am somewhat familiar with the CUDA visual profiler and the occupancy spreadsheet, although I am probably not leveraging them as well as I could. Profiling & optimizing CUDA code is not like profiling & optimizing code that runs on a CPU. So I am hoping to learn from your experiences about how to get the most out of my code. There was a post recently looking for the fastest possible code to identify self numbers, and I provided a CUDA implementation. I'm not satisfied that this code is as fast as it can be, but I'm at a loss as to figure out both what the right questions are and what tool I can get the answers from. How do you identify ways to make your CUDA kernels perform faster?

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  • .hgignore whole directory tree excepting one specific file

    - by John Mee
    Can anyone tell me the .hgignore pattern to track one specific file in a directory and to ignore everything else? I have a "media" directory which contains a "default.png", for obvious purposes, and the rest of the directory will hold user media. We want hg to ignore everything in the media directory excepting the default file.

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  • Load a controller into an other controller in cakephp

    - by john
    im developing a web application, using multiple pages, each with their own controller. The problem now is that there are some variables in a controller, created for one page, that are required for an other page ( with a different controller). Therefor i need to load one controller into the other one. I did this by adding App::import('Controller', 'sections'); $sections= new sectionsController; $sections-constructClasses(); to the controller, but this doens't seem to work.. Maybe u guys have some ideas? Thnx in advance!

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  • jquery: set variable based on one class from an element that has more than one class

    - by John
    Hi I'm trying to make a table who's columns and rows highlight on hover (I realise there are jquery plugins out there that will do this, but I'm trying to learn, so thought I'd have a stab at doing it for myself.) Here's what I've got so far: $('th:not(.features), td:not(.features)').hover(highlight); function highlight(){ $('th.highlightCol, td.highlightCol').removeClass('highlightCol'); var col = $(this).attr('class'); $('.' + col).addClass('highlightCol'); }; $('tr').hover(highlightRowOn, highlightRowOff); function highlightRowOn(){ $(this).children('td:not(.highlightCol)').addClass('highlightRow'); }; function highlightRowOff(){ $(this).children('td:not(.highlightCol)').removeClass('highlightRow'); }; This works fine apart from one problem: Each 'td' has a class specific to it's column (package1, package2, package3, package4). It is this that gets passed to the variable (col) to add the class 'highlightCol' to a column when one of its 'td's are hovered on. However, If you move the cursor to a new column along a highlighted row, the 'td' you land on has two classes (highlightedRow and package* ). These both get passed to the variable and as a result the new column does not receive the correct class to highlight. Is there a way for me to target just the 'package* ' class and pass that to the variable while ignoring the 'highlightedRow' class? I hope that's not too jumbled for someone to make sense of and many thanks for any help offered.

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  • How would you go about parsing markdown?

    - by John Leidegren
    You can find the syntax here. The thing is, the source that follows with the download is written in perl. Which I have no intentions of honoring. It is riddled with regex and it relies on MD5 hashes to escape certain characters. Something is just wrong about that! I'm about to hard code a parser for markdown and I'm wonder if someone had some experience with this? Edit: If you don't have anything meaningful to say about the actual parsing of markdown, spare me the time. (This might sound harsh, but yes, I'm looking for insight, not a solution i.e. third-party library). To help a bit with the answers, regex are meant to identify patterns! NOT to parse an entire grammar. That people consider doing so is foobar. If you think about markdown, it's fundamentally based around the concept of paragraphs. As such, a reasonable approach might be to split the input into paragraphs. There are many kinds of paragraphs e.g. heading, text, list, blockquote, code. The challenge is thus to identify these paragraphs and in what context they occur. I'll be back with a solution, once I find it's worthy to be shared.

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  • DB2 ZOS String Comparison Problem

    - by John
    I am comparing some CHAR data in a where clause in my sql like this, where PRI_CODE < PriCode The problem I am having is when the CHAR values are of different lengths. So if PRI_CODE = '0800' and PriCode = '20' it is returning true instead of false. It looks like it is comparing it like this '08' < '20' instead of like '0800' < '20' Does a CHAR comparison start from the Left until one or the other values end? If so how do I fix this? My values can have letters in it so convering to numeric is not an option.

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  • The Best Way to Parse Dates from an Email

    - by John
    Im currently developing an app that can parse dates from an email - i.e extract the time and dates from an email (similar to gmail). Currently I do this in php but this is a tad clunky. Whats the best language to do this in and are there any existing open source solutions?

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