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  • How to create a column containing a string of stars to inidcate levels of a factor in a data frame i

    - by PaulHurleyuk
    (second question today - must be a bad day) I have a dataframe with various columns, inculding a concentration column (numeric), a flag highlighting invalid results (boolean) and a description of the problem (character) dput(df) structure(list(x = c(1, 2, 3, 4, 5, 6, 7, 8, 9, 10), rawconc = c(77.4, 52.6, 86.5, 44.5, 167, 16.2, 59.3, 123, 1.95, 181), reason = structure(c(NA, NA, 2L, NA, NA, NA, 2L, 1L, NA, NA), .Label = c("Fails Acceptance Criteria", "Poor Injection"), class = "factor"), flag = c("False", "False", "True", "False", "False", "False", "True", "True", "False", "False" )), .Names = c("x", "rawconc", "reason", "flag"), row.names = c(NA, -10L), class = "data.frame") I can create a column with the numeric level of the reason column df$level<-as.numeric(df$reason) df x rawconc reason flag level 1 1 77.40 <NA> False NA 2 2 52.60 <NA> False NA 3 3 86.50 Poor Injection True 2 4 4 44.50 <NA> False NA 5 5 167.00 <NA> False NA 6 6 16.20 <NA> False NA 7 7 59.30 Poor Injection True 2 8 8 123.00 Fails Acceptance Criteria True 1 9 9 1.95 <NA> False NA 10 10 181.00 <NA> False NA and here's what I want to do to create a column with 'level' many stars, but it fails df$stars<-paste(rep("*",df$level)sep="",collapse="") Error: unexpected symbol in "df$stars<-paste(rep("*",df$level)sep" df$stars<-paste(rep("*",df$level),sep="",collapse="") Error in rep("*", df$level) : invalid 'times' argument rep("*",df$level) Error in rep("*", df$level) : invalid 'times' argument df$stars<-paste(rep("*",pmax(df$level,0,na.rm=TRUE)),sep="",collapse="") Error in rep("*", pmax(df$level, 0, na.rm = TRUE)) : invalid 'times' argument It seems that rep needs to be fed one value at a time. I feel that this should be possible (and my gut says 'use lapply' but my apply fu is v. poor) ANy one want to try ?

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  • Phonegap: Slow response with vibrate notification

    - by jjei
    I created a simple android application with jquery and phonegap. When testing the app with phone, I noticed that vibration effect, that I have used to indicate that user touches a button, comes after a delay of maybe 0,5 seconds. This is way too long delay and just confuses the user. Is this just the downside of using phonegap? Or is there any configuration or additional frameworks which could be used to make the app response and produce the vibration more quickly? I installed the vibration plugin like this: phonegap local plugin add https://git-wip-us.apache.org/repos/asf/cordova-plugin-vibration.git I use the code below to create the vibration effect. navigator.notification.vibrate(200); My phone gap version is 3.0.0-0.14.3

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  • run windows command from bash with output to standard out?

    - by Wayne
    Folks, I'm using git tools such as git bisect run which need to call a command to build and test my project. My command to do is nant which is a windows program. Or a build.cmd script which calls nant. It's easy to get the bash to call the nant build to run. But the hard part is how to get the standard output written to a file? I even installed the Windows PowerShell to try running a command from bash. Again, it works but the standard output fill says "permission denied" when I try to read it while the build is going on.

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  • Rails Beta3 & PaperClip & Passenger Bundler::PathError

    - by firecall
    So I'm going around in circles with this - I'm using a fork of the Paperclip Rails gem to get it to work with Rails3. Works fine on my OSX box with Passenger. But on my server (CentOS 5) I get this this error: git://github.com/lmumar/paperclip.git (at rails3) is not checked out. Please runbundle install(Bundler::PathError)Blockquote I tried Bundle Pack, but that doesnt pack gems from github. I read a post about setting the parh to the BUNDLE_HOME in my application.rb file which I tried: ENV['BUNDLER_HOME']="~/.bundle/ruby/1.8/bundler/gems/" But that doesnt work. Any ideas anyone? I dont know what else to do and have no idea how to debug or trace the problem further :( Passenger version 2.2.11. thanks.

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  • Java : HTTP POST Request

    - by SpunkerBaba
    I have to do a http post request to a web-service for authenticating the user with username and password. The Web-service guy gave me following information to construct HTTP Post request. POST /login/dologin HTTP/1.1 Host: webservice.companyname.com Content-Type: application/x-www-form-urlencoded Content-Length: 48 id=username&num=password&remember=on&output=xml The XML Response that i will be getting is <?xml version="1.0" encoding="ISO-8859-1"?> <login> <message><![CDATA[]]></message> <status><![CDATA[true]]></status> <Rlo><![CDATA[Username]]></Rlo> <Rsc><![CDATA[9L99PK1KGKSkfMbcsxvkF0S0UoldJ0SU]]></Rsc> <Rm><![CDATA[b59031b85bb127661105765722cd3531==AO1YjN5QDM5ITM]]></Rm> <Rl><![CDATA[[email protected]]]></Rl> <uid><![CDATA[3539145]]></uid> <Rmu><![CDATA[f8e8917f7964d4cc7c4c4226f060e3ea]]></Rmu> </login> This is what i am doing HttpPost postRequest = new HttpPost(urlString); How do i construct the rest of the parameters?

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  • How do I write to a file and print to a terminal cuncurrently in Unix?

    - by bias
    I have a little bash function to log my Macports outputs to a file (since installs often spew little tidbits that are easy to lose in terminal noise), then I just cat the file to the terminal: function porti { command sudo port install $@ >> $1.log 2>&1; cat $1.log } Is there a way to do this concurrently? I don't care about it being in Bash, that's just how I started it. BTW I pass $@ to install but only $1 for the file name so that I can do something like: porti git-gore +bash_completion and only get the file git-core.log however someone else might prefer to include variants in the file name ...

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  • Resolving patch conflicts manually

    - by Antony Hatchkins
    I've downloaded a patch from some site and trying to apply it (twisted, python web framework). Several hunks failed. How do I automate manual patching process using vim? Details: I'm trying to automate the process of applying failed hunks. Many tiny changes, each about adding/removing 1-2 chars. Difficult to see. I Have to create two new temporary files and :diffthis them manually to see the difference. Yes, outside VCS. I can imagine a neat way to deal with it using git, but I would prefer to avoid creating git repo for that.

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  • How should I deploy a patch to a Passenger-based production Rails application without downtime?

    - by Olly
    I have a Passenger-based production Rails application which has thousands of users. Occasionally we need to apply a code patch (we use git) and the current process for doing this (you can assume there are no data migrations) is: Perform git pull origin [production-branch-name] on the server touch tmp/restart.txt to restart Passenger This allows us to patch the server without having to resort to putting up a maintenance page, which is great, but it doesn't feel quite right since it's not actually a proper 'deployment', and we still need to manually update the revision file and our deployment doesn't appear in the Hoptoad or NewRelic services we use. Ideally I would run cap production deploy and just let the standard Capistrano deployment script take care of everything, but is this a dangerous thing to do without putting up a maintenance page? This deployment process seems to be fairly safe in that the new revision is deployed to a completely separate folder and only right at the end of the process is a symlink re-created to switch the currently deployed version, but I'm still fairly paranoid about this somehow resulting in a lost or failed request.

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  • Source control on internet i.e. no private networks.

    - by Kavitesh Singh
    Me and my friend are in the process of starting a small project and want to implement a source control. Now both are located in different cities and can communicate using internet for file sharing etc. I need an online hosting solution or any way where i can maintain the source code repository for both of us to check in/out. As of now we want to maintain it as private project. Does sourceforge allow hosting projects which would not be opensource? One option i was thinking, to obtain a static IP form ISP and host the repository.But that mean my system needs to be online when my friend wants to checkin/out or do some diff with old version code. Secondly, would SVN or git be a better choice in such a situation. I have no experience in git/mercurial as of now.

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  • filter to reverse lines of a text file

    - by Greg Hewgill
    I'm writing a small shell script that needs to reverse the lines of a text file. Is there a standard filter command to do this sort of thing? My specific application is that I'm getting a list of Git commit identifiers, and I want to process them in reverse order: git log --pretty=oneline work...master | grep -v DEBUG: | cut -d' ' -f1 | reverse The best I've come up with is to implement reverse like this: ... | cat -b | sort -rn | cut -f2- This uses cat to number every line, then sort to sort them in descending numeric order (which ends up reversing the whole file), then cut to remove the unneeded line number. The above works for my application, but may fail in the general case because cat -b only numbers nonblank lines. Is there a better, more general way to do this?

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  • Handling missing/incomplete data in R--is there function to mask but not remove NAs?

    - by doug
    As you would expect from a DSL aimed at data analysis, R handles missing/incomplete data very well, for instance: Many R functions have an 'na.rm' flag that you can set to 'T' to remove the NAs: mean( c(5,6,12,87,9,NA,43,67), na.rm=T) But if you want to deal with NAs before the function call, you need to do something like this: to remove each 'NA' from a vector: vx = vx[!is.na(a)] to remove each 'NA' from a vector and replace it w/ a '0': ifelse(is.na(vx), 0, vx) to remove entire each row that contains 'NA' from a data frame: dfx = dfx[complete.cases(dfx),] All of these functions permanently remove 'NA' or rows with an 'NA' in them. Sometimes this isn't quite what you want though--making an 'NA'-excised copy of the data frame might be necessary for the next step in the workflow but in subsequent steps you often want those rows back (e.g., to calculate a column-wise statistic for a column that has missing rows caused by a prior call to 'complete cases' yet that column has no 'NA' values in it). to be as clear as possible about what i'm looking for: python/numpy has a class, 'masked array', with a 'mask' method, which lets you conceal--but not remove--NAs during a function call. Is there an analogous function in R?

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  • bundler/capistrano is not installing gems with correct ruby version

    - by Douglas
    I'm trying to deploy my first app on a server with Capistrano, and I'm a bit lost with managing gemsets and ruby version. These are my (server and workstation) versions : Rails 3.2.8 RVM 1.16.17 Gem 1.8.24 Bundler 1.2.1 pg gem 0.14.1 My gemset are : Gemsets for ruby-1.9.3-p194 (found in /usr/local/rvm/gems/ruby-1.9.3-p194) (default) global = rail3dev20120606 I set the default gemset with : rvm use 1.9.3-p194@rail3dev20120606 --default --passenger When I run a : cap bundle:install The task end with success, but when I do a : gem list There are many missing gems though they are present in my Gemfile. When I go to check my gems in /var/www/opf/shared/bundle/ruby/ I find a folder called 1.9.1 and in /var/www/opf/shared/bundle/ruby/1.9.1/gems/ I can fond all of my needed gems (specified in Gemfile). I'm sure there is a problem with ruby version, but how do I solve this ? At the moment, if I do any rake command, I got a ruby crash [Bug] Segmentation fault, as it try to access the db and using postgresql_adapter. I think as many gems are missing there must have some gem dependencies not verified, and maybe a gem is using an incompatible ruby version 1.9.1 though it expect a 1.9.3. I think the issue is around managing ruby versions and gems. I'm certainly doing some mix with gemset and my capistrano deployement. I'm missing experience and info. Could anybody advise me how to handle this on the server ? What are the best practices ? How am I suppose to update my ruby version ? with Capistrano deploy.rb ? manually ? with/without rvm ? I saw a new version of ruby 1.9.3-p327 has just released. Should I use gemset or not ? What about the :rvm_ruby_string in my deploy.rb. Is it correctly spelled or should I remove the p194 part ? Should I Remove the :rvm_ruby_string ? Keep it ? Use a .rvmrc file ??? I'm really lost and some kind help would be welcome. This is my config/deploy.rb in any case : require 'bundler/capistrano' require File.join(File.dirname(__FILE__), 'deploy') + '/capistrano_database' set :rvm_type, :system set :rvm_ruby_string, 'ruby-1.9.3-p194@rail3dev20120606' require 'rvm/capistrano' set :application, 'opf' set :deploy_to, '/var/www/opf' set :rails_env, 'production' set :user, 'the_user' set :use_sudo, false set :group_writable, false set :scm, :git set :repository, '[email protected]:user/opf.git' set :branch, 'master' default_run_options[:pty] = true set :deploy_via, :remote_cache server '192.168.5.200', :web, :app, :db, :primary => true # If you are using Passenger mod_rails uncomment this: namespace :deploy do task :start do ; end task :stop do ; end task :restart, :roles => :app, :except => { :no_release => true } do run "#{try_sudo} touch #{File.join(current_path,'tmp','restart.txt')}" end end Thanks for any help

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  • Cleaning up a sparsebundle with a script

    - by nickg
    I'm using time machine to backup some servers to a sparse disk image bundle and I'd like to have a script to clean up the old back ups and re-size the image once space has been freed up. I'm fairly certain the data is protected because if I delete the old backups by right clicking, I have to enter a password to be able to delete them. To allow my script to be able to delete them, I've been running it as root. For some reason, it just won't run and every file it tries to delete I get rm: /file/: Operation not permitted Here is what I have as my script: #!/bin/bash for server in servername; do /usr/bin/hdiutil attach -mountpoint /path/to/mountpoint /path/to/sparsebundle/$server.sparsebundle/; /bin/sleep 10; /usr/bin/find /path/to/mountpoint -type d -mtime +7 -exec /bin/rm -rf {} \; /usr/bin/hdiutil unmount /path/to/mountpoint; /bin/sleep 10; /usr/bin/hdiutil compact /path/to/sparsebundle/$server.sparsebundle/; done exit; One of the problems I thought was causing this was it needed to have a mountpoint specified since the default mount was to /Volumes/Time\ Machine\ Backups/ that's why I created a mountpoint. I also thought that it was trying to delete the files to quickly after mounting and it wasn't actually mounted yet, that's why I added the sleep. I've also tried using the -delete option for find instead of -exec, but it didn't make any difference. Any help on this would be greatly appreciated because I'm out of ideas as to why this won't work.

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  • Parsing getopts in bash

    - by ABach
    I've got a bash function that I'm trying to use getopts with and am having some trouble. The function is designed to be called by itself (getch), with an optional -s flag (getch -s), or with an optional string argument afterward (so getch master and getch -s master are both valid). The snippet below is where my problem lies - it isn't the entire function, but it's what I'm focusing on: getch() { if [ "$#" -gt 2 ] || [ "$1" = "-h" ] || [ "$1" = "--help" ]; then echo "Usage: $0 [-s] [branch-name]" >&2 return 1 fi while getopts "s" opt; do echo $opt # This line is here to test how many times we go through the loop case $opt in s) squash=true shift ;; *) ;; esac done } The getch -s master case is where the strangeness happens. The above should spit out s once, but instead, I get this: [user@host:git-repositories/temp]$ getch -s master s s [user@host:git-repositories/temp]$ Why is it parsing the -s opt twice?

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  • Fluxbox compiling problems after making a change.

    - by Jack
    I'm trying to make the change here: http://fluxbox-wiki.org/index.php?title=Howto_Make_dblclick_titlebar_maximize I am using the current git version of the fluxbox source. I assume that those instructions are perhaps no longer valid for the current git version. In the void FluxboxWindow::setupWindow() function I can see no references to CommandRef or frame. I would like to know if it is possible that I could work out where they should go in that function, with only having a limited knowledge? I am still trying to learn programming and don't know enough just yet to work out where they should go. I assume I can't just paste in the suggested lines anywhere in that function, but why not? I can paste the source if needed, but I am unsure where to paste to.

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  • Sort command not working as expected

    - by user964689
    If anybody can help me to write a loop to iterate over files in a folder it would save me a huge amount of time. I think it must be quite a simple solution ,but I currently don't know how to nest a loop within a loop. So far I have this script: cd /folderlocation/ for i in `</textfile_containing_lines_to_iterate_through` do #size=`echo $i | perl -nE '/:([\d-]+)/ && say abs(eval $1)'` #echo "$size" zcat dataset | head -n 18 > temp"$i".vcf tabix dataset $i >> temp"$i".vcf vcftools --window-pi 1000000 --vcf temp10individuals"$i".vcf >> run_summary.txt cat out.windowed.pi >> outputfile_2 #rm temp* done grep -v "PI" outputfile_2 > outputfile rm outputfile_2 I need to expand this so that the script will run multiple times, through all of the 'textfiles_containing_lines_to_iterate_through'. Currently I change the name of the textfile manually each time and re-run the script. So I'd need a loop that does this for file in folder, and also that uses the name of the file as part of the outputfile name so that I can match an output file to an inputfile. Any help would be really useful and greatly appreciated! Many thanks in advance.

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  • Problem with unix pipe command

    - by Keyo
    I have a list of directory names in a text file. I want to use these as part of a file_name a git-svn clone command. This prints out the contents of the file line by line. cat repos_to_migrate.txt | tee $1 This however does not work: cat repos_to_migrate.txt | git svn clone file:///home/svn/$1 ... Unable to open repository 'file:///home/svn' ... Any ideas here? I'f it matters I'm running centos5.

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  • Run a command as cron would but from the command line.

    - by BCS
    I have a script that I'm trying to run from cron. When I run it from bash, it work just fine. However when I let cron do it's thing, I get a: myscript.sh: line 122: syntax error: unexpected end of file What I want is a way to run a command as if it was a cron job, but do it in my shell. As a side note: does anyone know what would be differnt under cron? (the script already has a #!/bin/sh line) To answer my own question: I added this to my crontab: * * * * * bcs for ((i=1; i <= 55; i++)) ; do find ~/.crontemp/ -name '*.run' -exec "{}" ";" ; sleep 1; done` and created this script: #!/bin/sh tmp=$(mktemp ~/.crontemp/cron.XXXXX) mknod $tmp.pipe p mv $tmp $tmp.pre echo $* '>' $tmp.pipe '1>&2' >> $tmp.pre echo rm $tmp.run >> $tmp.pre chmod 700 $tmp.pre mv $tmp.pre $tmp.run cat $tmp.pipe rm $tmp.pipe With that, I can run an arbitrary command with a delay of not more than one second. (And yes, I know there are all kinds of security issue involved in that)

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  • J-Monkey subclass

    - by user2971104
    I'm new in java and J-monkey and I'm trying to make a java game so for the Menu I have made a enum so I can Switch between any of my State but I want to keep the main file shorter so it can be easily to read so I'm making subclass the problem is that when run the game it give me an error that say "Uncaught exception thrown in Thread[LWJGL Renderer Thread,5,main] NullPointerException" I think this problem has to be something whit the pipeline Here is the code of my main file: package mygame; import com.jme3.app.SimpleApplication; import com.jme3.font.BitmapText; import com.jme3.material.Material; import com.jme3.math.ColorRGBA; import com.jme3.math.Vector3f; import com.jme3.renderer.RenderManager; import com.jme3.scene.Spatial; import com.jme3.scene.Geometry; import com.jme3.input.*; import com.jme3.input.controls.*; public class Main extends SimpleApplication { //GameStates enum GameState{Logo, Menu, Playing, Option}; GameState gameState = GameState.Logo; //Class Variables Logo logo; public Main() { logo = new Logo(); } public static void main(String[] args) { Main app = new Main(); app.start(); } public static void logo(String[] args) { Logo app = new Logo(); app.start(); } @Override public void simpleInitApp() { //Load flyCam.setMoveSpeed(20); if(gameState == GameState.Logo){ logo.simpleInitApp(); } } @Override public void simpleUpdate(float tpf) { } @Override public void simpleRender(RenderManager rm) { //TODO: add render code //Load if(gameState == GameState.Logo) { } } } And here is my Logo subclass: package mygame; import com.jme3.app.SimpleApplication; import com.jme3.renderer.RenderManager; import com.jme3.scene.Spatial; public class Logo extends SimpleApplication { @Override public void simpleInitApp() { Spatial Logo_Model = assetManager.loadModel("Models/Teapot/Logo.obj"); rootNode.attachChild(Logo_Model); } public void simpleRender(RenderManager rm) { //Load } }

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  • shell script stopped working --- need to rewrite?

    - by OopsForgotMyOtherUserName
    The script below worked on my Mac OS X. I'm now using Ubuntu OS, and the script is no longer working. I'm wondering if there's something that I need to change here? I did change the first line from #!/bin/bash to #!/bin/sh, but it's still throwing up an error.... Essentially, I get an error when I try to run it: Syntax error: end of file unexpected (expecting ")") #!/bin/sh REMOTE='ftp.example.com' USER='USERNAME' PASSWORD='PASSWORD' CMDFILE='/jtmp/rc.ftp' FTPLOG='/jtmp/ftplog' PATTERN='SampFile*' date > $FTPLOG rm $CMDFILE 2>/dev/null LISTING=$(ftp -in $REMOTE <<EOF user $USER $PASSWORD cd download ls $PATTERN quit EOF ) echo "open $REMOTE" >> $CMDFILE echo "user $USER $PASSWORD" >> $CMDFILE echo "verbose" >> $CMDFILE echo "bin" >> $CMDFILE echo "cd download" >> $CMDFILE for FILE in $LISTING do echo "get $FILE" >> $CMDFILE done echo "quit" >> $CMDFILE ftp -in < $CMDFILE >> $FTPLOG 2>&1 rm $CMDFILE

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  • Can not login Magento admin page after move to my localhost

    - by Xinrui Ma
    I just move my Magento store to my localhost environment for testing use, I also using Git to maintain code, but after I move all the files to my local environment, I can't login my admin page, but I can still see my frontend pages, and the git, the database, seems works well. When I type a wrong admin/password to my admin page, it still gives me "Invalid password". But when I enter the right one, it just refresh the page and stay at the login page, nothing happens. Does anyone has met this problem before? Has any ideas? Thanks in advance!

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  • Determine if a directory is empty, delete it if it is and delete that directroy name from a separate list. C-shell

    - by Kg123
    I have a directory named STA. Within that directory are about 600 other directories that have the format hh:mm:ss (for example 00:01:34). Within each of these sub-directories should be three files. I also have a file, 'waveformlist', (contained within STA) which is a list of all of these sub-directories i.e.: 00:01:34 00:02:35 etc. A lot of the sub-directories do not contain these three files and are instead empty. I want to run a C-shell script to go through every sub directory and check if it is empty. If it is empty I want to delete that sub directory from the main directory STA, and also remove that sub-directory name from the list 'waveformlist'. Below is my script so far. It does not recognize when the sub-directory is empty or not and does not like the rm $dir line. Also, I do not know how to go and remove the sub-directory name from 'waveformlist'. #!/bin/csh echo "Enter name of station folder to apply filter to as 'STA' e.g. APZ:" set ans = $< cd $ans set c=0 foreach dir (*:*) if ("${c}" == 0) then echo "Empty directory:" $dir rm $dir else echo ${dir} "has files" endif end I hope I have been clear enough. Thank you.

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  • GitExtension does not show up on Visual Studio 2010 Express (Windows 7)

    - by FZF
    Hi, I am using Visual Studio 2010 Express on Windows 7. I recently installed GitExtension and it seems to work fine (cloning and branching and what not). I expected it to show up on Visual Studio Express when I opened VS, but it does not. I have searched online and found a few references to the same problem recommending to use VS Extension manager to download the Git plugin for 2010. However, when I tried to use Extension manager on VS to access and install GitExtension plugin nothing related to Git showed up. Any suggestions to make the GitExtension show up on VS 2010 Express on Windows 7? Really appreciate any help.

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  • How do I build (get/download) time.h library?

    - by coffeenet
    I am trying to build a project on Linux via Makefile. I keep getting cannot find <sys/time.h> error. I asked around, and I was told that my project doesn't have access to library folders. Therefore, I am trying to solve this problem by using the time library locally inside my project's folder. I am very new to Linux. So, please forgive my question if it sounds naive. I found this, but I don't know what files I need, and how to build the library. http://sourceware.org/git/?p=glibc.git;a=tree;f=time;h=c950c5d4dd90541e8f3c7e1649fcde4aead989bb;hb=master Where can I find the time.h library/package? How do I build the library?

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  • Using popen() to invoke a shell command?

    - by Anvar
    When running the following code through xcode I get inconsistent behavior. Sometimes it prints the git version correctly, other times it doesn't print anything. The return code from the shell command is always 0 though. Any ideas on why this might be? What am I doing wrong? #define BUFFER_SIZE 256 int main (int argc, const char * argv[]) { FILE *fpipe; char *command="/opt/local/bin/git --version"; char line[BUFFER_SIZE]; if ( !(fpipe = (FILE*)popen(command, "r")) ) { // If fpipe is NULL perror("Problems with pipe"); exit(1); } while ( fgets( line, sizeof(char) * BUFFER_SIZE, fpipe)) { // Inconsistent (happens sometimes) printf("READING LINE"); printf("%s", line); } int status = pclose(fpipe); if (status != 0) { // Never happens printf("Strange error code: %d", status); } return 0; }

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