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• What's the easiest way to 'cat' groups of files together?

  - by rajitha

  I have files with naming convention of this pattern: bond_7.LEU.CA.1.dat bond_7.LEU.CA.2.dat bond_7.LEU.CA.3.dat bond_12.ALA.CB.1.dat bond_12.ALA.CB.2.dat bond_12.ALA.CB.3.dat ... I want to concatenate all files of the same group into a single one. For example: cat bond_7.LEU.CA.*.dat > ../bondvalues/bond_7.LEU.CA.1_3.dat There's large number of these files. How can achieve this with a bash script?

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• Run shell command with variable in filename via Python

  - by rajitha

  I have files with naming convention st009_out.abc1.dat st009_out.abc2.dat st009_out.abc3.dat .................. .................. I am writing Python code where I want to use data from the file to perform a math function and need to extract the second column from the file. I have tried it this way: for k in range(1,10): file1=open('st009_out.abc'+str(k)+'.dat','r') ........... os.system("awk '{print $2}' st009_out.abc${k}.pmf > raj.dat") but this is not working as it is not taking the value of k in the shell command. How do I progress?

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