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  • Rscript does not recognize setGeneric function

    - by Branko K.
    I am trying to convert an R script into something that a client can run in batch mode. My code uses generic functions and one snippet which is near the beginning goes like: setGeneric("testInput", function(inputData, params = list()) standardGeneric("testInput")) I've been using R CMD BATCH and it works fine. However I couldn't find an easy way to make my script print the output on the console, so based on that (and suggestion that Rscript.exe is the "proper" way to run R batch files) I decided to switch to Rscript. However when running the very same .R file with Rscript I get the following: Error: could not find function "setGeneric" Execution halted I know there is probably a trivial reason behind this but I just cannot figure it out. Can someone please point me to where the mistake is? Thanks so much in advance. Cheers!

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  • How to run R through PHP with exec?

    - by dkar
    I am going to ask something, that I know that it has been asked already some times. But since, all of the past posts are quite old and none of them answer my problem..I try again. I am completely new in R language and relative new in php. What I want to do is to use the exec() function from php in order to execute a R script. Most of the people here will start talking about rapache, rserve and I don't know what else..but since I am not familiar with all these technologies, I prefer just using exec. The code I will show here is working just fine when I run it with Rscript from the terminal. # R script png("temp.png") plot(5,5) dev.off() But when I try to run it either with Rscript or with R CMD BATCH from PHP, like this: echo exec("Rscript my_rscript.R"); //OR //echo exec("R CMD BATCH my_rscript.R"); I get nothing back. I have checked if exec() function is available and if it works. Everything is ok with this. I read also, that I might have to change the permissions of the webserver...but I don't know how to do this in mamp. I hope I am clear with my problem and someone can help. Thanks Dimitris

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  • Installing Cairo to get FastRWeb working for R gWidgetsWWW2 -pkg

    - by hhh
    I want to install FastRWeb for R but it requires some Cairo. How can I install the Cairo? compilation terminated. make: *** [xlib-backend.o] Error 1 ERROR: compilation failed for package ‘Cairo’ * removing ‘/home/xfz/R/i686-pc-linux-gnu-library/2.13/Cairo’ ERROR: dependency ‘Cairo’ is not available for package ‘FastRWeb’ * removing ‘/home/xfz/R/i686-pc-linux-gnu-library/2.13/FastRWeb’ The downloaded packages are in ‘/tmp/Rtmpno8hhF/downloaded_packages’ Warning messages: 1: In install.packages("FastRWeb", , "http://rforge.net/", type = "source") : installation of package 'Cairo' had non-zero exit status 2: In install.packages("FastRWeb", , "http://rforge.net/", type = "source") : installation of package 'FastRWeb' had non-zero exit status I cannot find what the Cairo is here, 16 entries with this search term below. It is apparently some library. $ apt-cache search libcairo|wc 16 132 996 Perhaps related http://stackoverflow.com/questions/9826128/r-making-r-rook-program-into-rscript-program-r http://stackoverflow.com/questions/9812547/r-gui-vizualiser-with-command-line-access-browser-based-letting-users-to-s Some related packages FastRWeb and RServe for the gWidgetsWWW2 -pkg.

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  • CodePlex Daily Summary for Friday, December 10, 2010

    CodePlex Daily Summary for Friday, December 10, 2010Popular ReleasesFree Silverlight & WPF Chart Control - Visifire: Visifire Silverlight, WPF Charts v3.6.5 Released: Hi, Today we are releasing final version of Visifire, v3.6.5 with the following new feature: * New property AutoFitToPlotArea has been introduced in DataSeries. AutoFitToPlotArea will bring bubbles inside the PlotArea in order to avoid clipping of bubbles in bubble chart. You can visit Visifire documentation to know more. http://www.visifire.com/visifirechartsdocumentation.php Also this release includes few bug fixes: * Chart threw exception while adding new Axis in Chart using Vi...PHPExcel: PHPExcel 1.7.5 Production: DonationsDonate via PayPal via PayPal. If you want to, we can also add your name / company on our Donation Acknowledgements page. PEAR channelWe now also have a full PEAR channel! Here's how to use it: New installation: pear channel-discover pear.pearplex.net pear install pearplex/PHPExcel Or if you've already installed PHPExcel before: pear upgrade pearplex/PHPExcel The official page can be found at http://pearplex.net. Want to contribute?Please refer the Contribute page.UserVoice Helper for WebMatrix: UserVoice Helper v0.9: This version will work with ASP.NET WebPages and ASP.NET MVC ApplicationsDNN Simple Article: DNNSimpleArticle Module V00.00.03: The initial release of the DNNSimpleArticle module (labelled V00.00.03) There are C# and VB versions of this module for this initial release. No promises that going forward there will be packages for both languages provided for future releases. This module provides the following functionality Create and display articles Display a paged list of articles Articles get created as DNN ContentItems Categorization provided through DNN Taxonomy SEO functionality for article display providi...UOB & ME: UOB_ME 2.5: latest versionCouchDB.NET: CouchDB.NET 0.1: CouchDB.NET ------- Libraries and providers to use CouchDB features from .NET This distribution includes the following projects: - MachineKeyGenerator: Command line tool to generate a machine key string for use in App.Config and Web.Config files. - CouchDB.NET: Library to facilitate the use of CouchDB features. It uses Hadi Hariri's EasyHttp library to communicate with the CouchDB server. More info at: https://github.com/hhariri/EasyHttp - CouchDb.ASP.NET: ASP.NET Membership Provider and ASP...AutoLoL: AutoLoL v1.4.3: AutoLoL now supports importing the build pages from Mobafire.com as well! Just insert the url to the build and voila. (For example: http://www.mobafire.com/league-of-legends/build/unforgivens-guide-how-to-build-a-successful-mordekaiser-24061) Stable release of AutoChat (It is still recommended to use with caution and to read the documentation) It is now possible to associate *.lolm files with AutoLoL to quickly open them The selected spells are now displayed in the masteries tab for qu...SubtitleTools: SubtitleTools 1.2: - Added auto insertion of RLE (RIGHT-TO-LEFT EMBEDDING) Unicode character for the RTL languages. - Fixed delete rows issue.PHP Manager for IIS: PHP Manager 1.1 for IIS 7: This is a final stable release of PHP Manager 1.1 for IIS 7. This is a minor incremental release that contains all the functionality available in 53121 plus additional features listed below: Improved detection logic for existing PHP installations. Now PHP Manager detects the location to php.ini file in accordance to the PHP specifications Configuring date.timezone. PHP Manager can automatically set the date.timezone directive which is required to be set starting from PHP 5.3 Ability to ...Algorithmia: Algorithmia 1.1: Algorithmia v1.1, released on December 8th, 2010.SuperSocket, an extensible socket application framework: SuperSocket 1.0 SP1: Fixed bugs: fixed a potential bug that the running state hadn't been updated after socket server stopped fixed a synchronization issue when clearing timeout session fixed a bug in ArraySegmentList fixed a bug on getting configuration valueCslaGenFork: CslaGenFork 4.0 CTP 2: The version is 4.0.1 CTP2 and was released 2010 December 7 and includes the following files: CslaGenFork 4.0.1-2010-12-07 Setup.msi Templates-2010-10-07.zip For getting started instructions, refer to How to section. Overview of the changes Since CTP1 there were 53 work items closed (28 features, 24 issues and 1 task). During this 60 days a lot of work has been done on several areas. First the stereotypes: EditableRoot is OK EditableChild is OK EditableRootCollection is OK Editable...My Web Pages Starter Kit: 1.3.1 Production Release (Security HOTFIX): Due to a critical security issue, it's strongly advised to update the My Web Pages Starter Kit to this version. Possible attackers could misuse the image upload to transmit any type of file to the website. If you already have a running version of My Web Pages Starter Kit 1.3.0, you can just replace the ftb.imagegallery.aspx file in the root directory with the one attached to this release.EnhSim: EnhSim 2.2.0 ALPHA: 2.2.0 ALPHAThis release adds in the changes for 4.03a. at level 85 To use this release, you must have the Microsoft Visual C++ 2010 Redistributable Package installed. This can be downloaded from http://www.microsoft.com/downloads/en/details.aspx?FamilyID=A7B7A05E-6DE6-4D3A-A423-37BF0912DB84 To use the GUI you must have the .NET 4.0 Framework installed. This can be downloaded from http://www.microsoft.com/downloads/en/details.aspx?FamilyID=9cfb2d51-5ff4-4491-b0e5-b386f32c0992 - Updated En...ASP.NET MVC Project Awesome (jQuery Ajax helpers): 1.4: A rich set of helpers (controls) that you can use to build highly responsive and interactive Ajax-enabled Web applications. These helpers include Autocomplete, AjaxDropdown, Lookup, Confirm Dialog, Popup Form, Popup and Pager new stuff: popup WhiteSpaceFilterAttribute tested on mozilla, safari, chrome, opera, ie 9b/8/7/6nopCommerce. ASP.NET open source shopping cart: nopCommerce 1.90: To see the full list of fixes and changes please visit the release notes page (http://www.nopCommerce.com/releasenotes.aspx).myCollections: Version 1.2: New in version 1.2: Big performance improvement. New Design (Added Outlook style View, New detail view, New Groub By...) Added Sort by Media Added Manage Movie Studio Zoom preference is now saved. Media name are now editable. Added Portuguese version You can now Hide details panel Add support for FLAC tags You can now imports books from BibTex Xml file BugFixingmytrip.mvc (CMS & e-Commerce): mytrip.mvc 1.0.49.0 beta: mytrip.mvc 1.0.49.0 beta web Web for install hosting System Requirements: NET 4.0, MSSQL 2008 or MySql (auto creation table to database) if .\SQLEXPRESS auto creation database (App_Data folder) mytrip.mvc 1.0.49.0 beta src System Requirements: Visual Studio 2010 or Web Deweloper 2010 MSSQL 2008 or MySql (auto creation table to database) if .\SQLEXPRESS auto creation database (App_Data folder) Connector/Net 6.3.4, MVC3 RC WARNING For run and debug mytrip.mvc 1.0.49.0 beta src download and ...Menu and Context Menu for Silverlight 4.0: Silverlight Menu and Context Menu v2.3 Beta: - Added keyboard navigation support with access keys - Shortcuts like Ctrl-Alt-A are now supported(where the browser permits it) - The PopupMenuSeparator is now completely based on the PopupMenuItem class - Moved item manipulation code to a partial class in PopupMenuItemsControl.cs - Moved menu management and keyboard navigation code to the new PopupMenuManager class - Simplified the layout by removing the RootGrid element(all content is now placed in OverlayCanvas and is accessed by the new ...MiniTwitter: 1.62: MiniTwitter 1.62 ???? ?? ??????????????????????????????????????? 140 ?????????????????????????? ???????????????????????????????? ?? ??????????????????????????????????New ProjectsAccountingGuid: for testing onlyChinese Nag Screen: This is a simple but effective program for learning to recognize Mandarin characters. The application sits in the system tray and displays a character random through your day. You can only get rid of it by typing in the pinyin.CouchDB.NET: .NET libraries to use CouchDB from .NET. Included are Membership and Roles provider so that you may use CouchDB as your integrated DB backend on your ASP.NET projects. Please see the readme.txt file for instructions.DataSetMapper: The idea behind DataSetMapper is to provide support for the automatic mapping of legacy DataSet based structures to proper domain objects. In essence the aim is to create the Mapping aspect of an ORM without the persistence concerns.EasyXnaAudio: EasyXnaAudio is a simple component for use in XNA Game Studio 3.1/4.0 projects that provides an easy interface to load, play, and manage songs and sounds in your game.FixMailboxSD - Exchange Mailbox Security Descriptor Canonicalizer: This is a small utility to fix mailbox security descriptors in Microsoft Exchange that have become non-canonical. It must be run on a machine with Exchange System Manager for Exchange 2003 installed, but it will work against mailboxes on 2003 or 2007 (not 2010).GearSynth Plugin: a plugin for graphsynth that makes gear trainsGroceryList: TBD with first versionIBMS Suite Build on the Associate Platform: A new way of approaching Information Systems. From the UI, users of the IS will be able to build and manipulate the IS to whatever way fits their needs. We have simplified development, removed the chasm between management and IT and give the power of simplification to the user!Ivy Nasha Framework: A PHP FrameworkjQuery helpers for ASP.NET and ASP.NET MVC: jQuery helpers makes it easier for ASP.NET developers to build jQuery scripts. It's developed in C#. JSTest.NET: JSTest.NET enabled JavaScript unit tests to be run directly in the test framework of your choice (MSTest, NUnit, xUnit, etc) and all without the need for a web browser. JSTest.NET utilizes the Windows Script Host (CScript) to run fast, fully debuggable JavaScript unit tests!Multicore Task Framework: MTF is a visual tool to simplify building robust component based .NET applications. MTF is designed to make full use of the power of multi-core processors.Nazha Script On DLR: NazhaPascalESE - a Delphi/Pascal class library for Microsoft ESENT database API: This pascal class library, primarily written for Delphi's Object Pascal, provides a lightweight and easy-to-use wrapper around the ESENT API. Perpetuum Hangar: A Character planner for the online game "Perpetuum"Projeto Exemplo: Projeto exemplo para a atividade 3 da disciplina.PSiteCode: PSiteCode Manager rScript Engine: rScript scripting engine is a managed script engine wrote in C# that supports Visual Basic and C# syntax based scripts. It provides Type's for dynamically getting and setting properties, invoking methods and run-time compilation of scripts.SharePoint 2010 User Profile WebPart: This webpart shows all user profile properties and values of the properties for a particular user profile. The results are shown in a table containing the display and technical name together with the user value.SHC: shriSHMTools: SHMTools is set of compatible software tools (mostly Matlab based) for structural health monitoring (SHM) research. This includes algorithms for system design, modeling, data acquisition, feature extraction, classification, and prognosis.SwapWin: SwapWin is a tiny and handy tool which swaps windows on different screens. Developed in C# and .NET 3.5.Teachers Diary: Teachers diary is application realizing electronic teacher's notepad with student marks. Current localization of the application is in czech language only.VkApp: Vk app for downloadingWebSpirit: A lightweighted web server implemented by C# which supports sufficient extendible feature. By zjuWPF & MEF Studio: WPF & MEF Studio

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