Search Results

Search found 9 results on 1 pages for 'rstudio'.

Page 1/1 | 1 

• Load XML to DataFrame in R

  - by Rohit Kandhal

  I am new to R programming and trying to load a simple XML in RStudio. I tried using XMLToDataFrame but got this error XML content does not seem to be XML: 'temp.xml' XML Schema <root> <row Id="1" UserId="1" Name="Rohit" Date="2009-06-29T10:28:58.013" /> <row Id="2" UserId="3" Name="Rohit" Date="2009-06-29T10:28:58.030" /> </root> Please provide me some direction on which function I should use here.

  Read the article

• How do I suppress this output?

  - by David

  I have a code chunk in an R Markdown file. ```{r} library(UsingR) ``` Using knitHTML to compile causes the following output, which never happened before I updated to the latest versions of R and RStudio: ## Loading required package: MASS ## Loading required package: HistData ## Loading required package: Hmisc ## Loading required package: grid ## Loading required package: lattice ## Loading required package: survival ## Loading required package: splines ## Loading required package: Formula ## ## Attaching package: 'Hmisc' ## ## The following objects are masked from 'package:base': ## ## format.pval, round.POSIXt, trunc.POSIXt, units ## ## Loading required package: aplpack ## Loading required package: tcltk ## Loading required package: quantreg ## Loading required package: SparseM ## ## Attaching package: 'SparseM' ## ## The following object is masked from 'package:base': ## ## backsolve ## ## ## Attaching package: 'quantreg' ## ## The following object is masked from 'package:Hmisc': ## ## latex ## ## The following object is masked from 'package:survival': ## ## untangle.specials ## ## ## Attaching package: 'UsingR' ## ## The following object is masked from 'package:survival': ## ## cancer How can I suppress this output? Note: echo=FALSE did not work.

  Read the article

• dependson option does not work in knitr?

  - by umair durrani

  Data File Name of the data file = toto.rmd Contains following: ##1st ```{r clock, cache=TRUE} x <- 600 x ``` ##2nd ```{r, cache=TRUE, cache.path="toto_cache/", dependson="clock"} x+5 ``` Problem The second chunk is not being updated. Previously x was 500, after updating it to 600, I get following after knit HTML in RSTUDIO: 1st x <- 600 x ## [1] 600 2nd x+5 ## [1] 505 What am I missing here? Session Info > sessionInfo() R version 3.0.3 (2014-03-06) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] ggplot2_0.9.3.1 loaded via a namespace (and not attached): [1] colorspace_1.2-3 dichromat_2.0-0 digest_0.6.4 evaluate_0.5.5 [5] formatR_0.10 grid_3.0.3 gtable_0.1.2 htmltools_0.2.4 [9] knitr_1.6 labeling_0.2 MASS_7.3-29 munsell_0.4.2 [13] plyr_1.8.1 proto_0.3-10 RColorBrewer_1.0-5 Rcpp_0.11.0 [17] reshape2_1.2.2 rmarkdown_0.2.64 scales_0.2.3 stringr_0.6.2 [21] tools_3.0.3 yaml_2.1.10 >

  Read the article

• How to get OCI lib to work on red hat machine to work with R Oracle?

  - by Matt Bannert

  I need to get OCI lib working on my rhel 6.3 machine and I am experiencing some trouble with OCI headers files that can't be found. I have installed (using yum install) oracle-instantclient11.2-basic-11.2.0.3.0-1.x86_64.rpm because this official page it's all I need to run OCI. To test the whole thing in general I've installed sqplus64, which worked after I set export LD_LIBRARY_PATH=/usr/lib/oracle/11.2/client64/lib. Unfortunately the headers files couldn't be found after setting LD_LIBRARY_PATH. Actually I am not surprised because there is no include directory in any of these oracle paths. So the question is: Where do I get these missing header files from? Are they actually already there and I just can find them? Btw: I am doing this whole exercise because I want to use ROracle on my R Studio server and this R package depends on the OCI library. Once I am back in R territory the road gets much less bumpier for me. EDIT: this documentation helped me a little further. However, I guess I found some header files now in: "/usr/include/oracle/11.2/client64". But which variable do I have to set to this location?

  Read the article

• Installation Error When Installing Package from R Forge

  - by Suminda Sirinath Salpitikorala

  I am trying to update zoo from R Forge. install.packages("zoo", repo = "http://r-forge.r-project.org") But I get the following error Installing package(s) into ‘C:/REVOLU~1/R-COMM~1.3/R-212~1.2/library’ (as ‘lib’ is unspecified) Warning in install.packages : cannot open: HTTP status was '404 Not Found' Warning in install.packages : cannot open: HTTP status was '404 Not Found' Warning in install.packages : unable to access index for repository http://r-forge.r-project.org/bin/windows/contrib/2.12 Warning in install.packages : package ‘zoo’ is not available I am using Revolution R Community version 4.3 (64-bit). install.packages("zoo") Installs a slightly dated version of zoo

  Read the article

• Installing packages in R path[1]="\file/users/bernard/R/win-library/2.15": Access is denied

  - by user1812210

  I recently attended an R training course and was happily working with a laptop in RStudio. On my return to the office I installed RStudio and I tried to run some scripts I had gathered from the course. However, these scripts required me to install packages and when I tried to install the packages the result was an error. Error in install.packages : path[1]="\file/users/bernard/R/win-library/2.15": Access is denied In my firm we write to a server drive refferred to as the U: drive rather than the hard disk on the desktop for security reasons. Any ideas what is going on? I have checked the properties of the folder in windows and it says I have permission but still it fails. I have tried creating a folder on the C drive and directing R_LIBS_USER to it but no luck.

  Read the article

• Once installed geos library (C++, and C), and then trying to install rgeos package (R), it reports geos-config missing!

  - by user1873888

  Knowing that the package rgeos, from the R language, requieres a prior installation of geos libraries, I installed, both, libgeos and libgeos-c1 (3.2.2), using the synaptic installer in my Ubuntu 12.04 (32 bit) machine. Then I tried to install rgeos directly from the R console, and it issued a message in the sense that geos-config was not found. The output is as follows: > install.packages("rgeos") Installing package(s) into ‘/home/checo/R/i486-pc-linux-gnu-library/2.15’ (as ‘lib’ is unspecified) also installing the dependency ‘sp’ probando la URL 'http://cran.rstudio.com/src/contrib/sp_1.0-9.tar.gz' Content type 'application/x-gzip' length 882102 bytes (861 Kb) URL abierta ================================================== downloaded 861 Kb probando la URL 'http://cran.rstudio.com/src/contrib/rgeos_0.2-19.tar.gz' Content type 'application/x-gzip' length 221471 bytes (216 Kb) URL abierta ================================================== downloaded 216 Kb * installing *source* package ‘sp’ ... ** package ‘sp’ successfully unpacked and MD5 sums checked ** libs gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c R centroid.c -o Rcentroid.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c gcdist.c -o gcdist.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip.c -o pip.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pip2.c -o pip2.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sp_xports.c -o sp_xports.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c surfaceArea.c -o surfaceArea.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c zerodist.c -o zerodist.o gcc -std=gnu99 -shared -o sp.so Rcentroid.o gcdist.o init.o pip.o pip2.o sp_xports.o surfaceArea.o zerodist.o -L/usr/lib/R/lib -lR installing to /home/checo/R/i486-pc-linux-gnu-library/2.15/sp/libs ** R ** data ** demo ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ‘intro_sp.Rnw’ ‘over.Rnw’ ** testing if installed package can be loaded * DONE (sp) * installing *source* package ‘rgeos’ ... ** package ‘rgeos’ successfully unpacked and MD5 sums checked configure: CC: gcc -std=gnu99 configure: CXX: g++ configure: rgeos: 0.2-17 checking for /usr/bin/svnversion... no configure: svn revision: 394 checking geos-config usability... ./configure: line 1385: geos-config: command not found no configure: error: geos-config not usable ERROR: configuration failed for package ‘rgeos’ * removing ‘/home/checo/R/i486-pc-linux-gnu-library/2.15/rgeos’ Warning in install.packages : installation of package ‘rgeos’ had non-zero exit status Forgive my ignorance, but I don't know where this file, "geos-config", comes from: should it be generated by the gcc compilations above, or should it be previously installed when the libgeos libraries were intalled? I learnt, from another machine, that "geos-config" is an executable and that it should be installed in /usr/bin. Do you have any idea on what's wrong with my procedure? Thanks, -Sergio.

  Read the article

• Oracle R Distribution 3.1.1 Released

  - by Sherry LaMonica-Oracle

  Oracle R Distribution version 3.1.1 has been released to Oracle's public yum today. R-3.1.1 (code name "Sock it to Me") is an update to R-3.1.0 that consists mainly of bug fixes. It also includes enhancements related to accessing package help files, improved accuracy when importing data with large integers, and better integration with RStudio graphics. The full list of new features and bug fixes is listed in the NEWS file.To install Oracle R Distribution using yum, follow the instructions in the Oracle R Enterprise Installation and Administration Guide.Installing using yum will resolve any operating system dependencies automatically. As such, we recommend using yum to install Oracle R Distribution. However, if yum is not available, you can install Oracle R Distribution RPMs directly using RPM commands.For Oracle Linux 5, the Oracle R Distribution RPMs are available in the Enterprise Linux Add-Ons repository:  R-3.1.1-1.el5.x86_64.rpm   R-core-3.1.1-1.el5.x86_64.rpm  R-devel-3.1.1-1.el5.x86_64.rpm  libRmath-3.1.1-1.el5.x86_64.rpm  libRmath-devel-3.1.1-1.el5.x86_64.rpm  libRmath-static-3.1.1-1.el5.x86_64.rpm For Oracle Linux 6, the Oracle R Distribution RPMs are available in the Oracle Linux Add-Ons repository:  R-3.1.1-1.el6.x86_64.rpm  R-core-3.1.1-1.el6.x86_64.rpm  R-devel-3.1.1-1.el6.x86_64.rpm  libRmath-3.1.1-1.el6.x86_64.rpm  libRmath-devel-3.1.1-1.el6.x86_64.rpm  libRmath-static-3.1.1-1.el6.x86_64.rpmFor example, this command installs the R 3.1.1 RPM on Oracle Linux x86-64 version 6:  rpm -i R-3.1.1-1.el6.x86_64.rpm To complete the Oracle R Distribution 3.1.1 installation, repeat this command for each of the 6 RPMs, resolving dependencies as required. Oracle R Distribution 3.1.1 is not yet officially certified with Oracle R Enterprise. Refer to Table 1-2 in the Oracle R Enterprise Installation Guide for supported configurations of Oracle R Enterprise components, or check this blog for updates. The Oracle R Distribution 3.1.1 binaries for Windows, AIX, Solaris SPARC and Solaris x86 will be available on OSS, Oracle's Open Source Software portal, in the coming weeks.

  Read the article

• Unable to access index for repository error?

  - by Tommy O'Dell

  I've just created a package (RTIO) and a package repository (Q:/Integrated Planning/R), which is a company network drive. I've put my package into the folder: Q:/Integrated Planning/R/bin/windows/contrib/2.15.1/RTIO_0.1-2.zip As per Dirk's instructions in this SO, I've run the following commands: > setwd("Q:/Integrated Planning/R/bin/windows/contrib/2.15.1") > tools::write_PACKAGES(".", type="win.binary") > list.files() [1] "PACKAGES" "PACKAGES.gz" "RTIO_0.1-2.zip" > With the code below, I've added the local repository to my list of repos (and I'll get other users to do the same): options(repos = c(getOption("repos"), RioTintoIronOre = "Q:/Integrated Planning/R")) And now trying to install my package I get an error: > install.packages("RTIO") Installing package(s) into ‘C:/Program Files/R/R-2.15.1/library’ (as ‘lib’ is unspecified) Warning in install.packages : unable to access index for repository Q:/Integrated Planning/R/bin/windows/contrib/2.15 Warning in install.packages : unable to access index for repository Q:/Integrated Planning/R/bin/windows/contrib/2.15 Warning in install.packages : unable to access index for repository Q:/Integrated Planning/R/bin/windows/contrib/2.15 Warning in install.packages : package ‘RTIO’ is not available (for R version 2.15.1) What does unable to access index for repository tell me? And how can I fix it? What I'm really looking to do is to do, under Windows and with RStudio as the IDE, is to let other internal R users add this package repo such that they're able to run commands like install.packages("RTIO") or update.packages() (and presumably use the IDE to manage packages via the GUI)?

  Read the article

1