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  • Linux server apache httpd processes take i/o wait to close to 100% and lock down server

    - by user3682065
    For about 5 days now, and seemingly out of the blue, my linux server has started locking up from time to time. The pattern is always the same as far as I can tell from top and iotop commands around the time it starts happening: One or more httpd processes (usually one) hang and start using up 100% of CPU power, the %wa goes close to 100% and in the iotop I see several httpd processes with 99.99% in the IO column. I'm also running an SVN server on this machine through apache and the one way that I've been consistently able to reproduce this is to do an SVN commit of new files or an SVN update from the repository on this server (I am the only one using this SVN repository). This will always reproduce this scenario successfully, but until very recently I had no problems at all checking in/out of SVN. But sometimes it just happens for no detectable reason at all it seems. So it seems like there is some issue with my Apache that leads it to have processes use up a lot of read/write upon certain triggers. I was wondering if anyone could help me uncover that issue. EDIT: OK now it's happening again: This is top: [root@server ~]# top top - 10:56:54 up 2:59, 5 users, load average: 171.46, 70.35, 27.01 Tasks: 328 total, 2 running, 326 sleeping, 0 stopped, 0 zombie Cpu(s): 1.9%us, 2.0%sy, 0.0%ni, 0.0%id, 96.1%wa, 0.0%hi, 0.0%si, 0.0%st Mem: 2021144k total, 1968192k used, 52952k free, 2500k buffers Swap: 4194288k total, 2938584k used, 1255704k free, 39008k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ COMMAND 10390 apache 20 0 2774m 936m 6200 D 2.0 47.4 1:52.27 httpd 2149 root 20 0 927m 13m 1040 S 0.7 0.7 1:50.46 namecoind 11 root 20 0 0 0 0 R 0.3 0.0 0:30.10 events/0 23 root 20 0 0 0 0 S 0.3 0.0 0:17.88 kblockd/1 2049 root 20 0 382m 4932 2880 D 0.3 0.2 0:03.67 httpd 2144 root 20 0 1702m 69m 1164 S 0.3 3.5 5:19.68 bitcoind 6325 root 20 0 15164 1100 656 R 0.3 0.1 0:11.09 top 10311 apache 20 0 387m 9496 7320 D 0.3 0.5 0:01.89 httpd 10313 apache 20 0 391m 10m 7364 D 0.3 0.5 0:02.40 httpd 10466 apache 20 0 399m 12m 7392 D 0.3 0.7 0:02.41 httpd 10599 apache 20 0 391m 9324 7340 D 0.3 0.5 0:00.15 httpd 10628 apache 20 0 384m 7620 4052 D 0.3 0.4 0:00.01 httpd 10633 apache 20 0 384m 7048 3504 D 0.3 0.3 0:00.01 httpd 10634 apache 20 0 384m 8012 4048 D 0.3 0.4 0:00.02 httpd 10638 apache 20 0 400m 22m 9.8m D 0.3 1.1 0:01.93 httpd 10640 apache 20 0 385m 8288 4028 D 0.3 0.4 0:00.03 httpd 10641 apache 20 0 401m 21m 6376 D 0.3 1.1 0:01.45 httpd 10759 apache 20 0 385m 8816 3480 D 0.3 0.4 0:01.45 httpd 10773 apache 20 0 384m 8044 3464 D 0.3 0.4 0:00.02 httpd This is an iotop snapshot: Total DISK READ: 5.93 M/s | Total DISK WRITE: 0.00 B/s TID PRIO USER DISK READ DISK WRITE SWAPIN IO> COMMAND 10732 be/4 apache 3.76 K/s 0.00 B/s 0.00 % 58.48 % httpd 876 be/3 root 0.00 B/s 52.68 K/s 0.00 % 52.98 % [jbd2/dm-1-8] 10906 be/4 root 124.17 K/s 0.00 B/s 0.00 % 23.03 % sh -c [ -x /usr/local/psa/admin/sbin/backupmng ] && /usr/local/psa/admin/sbin/backupmng >/dev/null 2>&1 2156 be/4 root 206.94 K/s 0.00 B/s 0.00 % 21.15 % bitcoind 10904 be/4 mysql 0.00 B/s 0.00 B/s 0.00 % 18.94 % mysqld --basedir=/usr --datadir=/var/lib/mysql --user=mysql --log-error=/var/log/mysqld.log --pid-file=/var/run/mysqld/mysqld.pid --socket=/var/lib/mysql/mysql.sock 10773 be/4 apache 7.53 K/s 0.00 B/s 0.00 % 14.77 % httpd 10641 be/4 apache 15.05 K/s 0.00 B/s 0.00 % 11.57 % httpd 10399 be/4 apache 1057.29 K/s 0.00 B/s 43.16 % 10.56 % httpd 10682 be/4 sw-cp-se 158.03 K/s 0.00 B/s 0.00 % 7.45 % sw-engine-cgi -c /usr/local/psa/admin/conf/php.ini -d auto_prepend_file=auth.php3 -u psaadm 10774 be/4 apache 3.76 K/s 0.00 B/s 0.00 % 6.53 % httpd 10624 be/4 apache 0.00 B/s 0.00 B/s 0.00 % 5.53 % httpd 10356 be/4 apache 899.26 K/s 0.00 B/s 35.52 % 4.01 % httpd 10795 be/4 apache 0.00 B/s 0.00 B/s 0.00 % 3.93 % httpd 10804 be/4 apache 7.53 K/s 0.00 B/s 0.00 % 3.08 % httpd 4379 be/4 root 2.89 M/s 0.00 B/s 99.99 % 0.00 % namecoind 10619 be/4 apache 462.80 K/s 0.00 B/s 7.80 % 0.00 % httpd 10636 be/4 apache 3.76 K/s 0.00 B/s 0.00 % 0.00 % httpd 10716 be/4 mysql 105.35 K/s 0.00 B/s 5.92 % 0.00 % mysqld --basedir=/usr --datadir=/var/lib/mysql --user=mysql --log-error=/var/log/mysqld.log --pid-file=/var/run/mysqld/mysqld.pid --socket=/var/lib/mysql/mysql.sock 1988 be/4 root 18.81 K/s 0.00 B/s 0.00 % 0.00 % spamd_full.sock I also ran lsof -p for pid 10390 which was way up top under the top command and this is the bottom line where I can sort of see what request this was and it says CLOSE_WAIT: httpd 10390 apache 34u IPv6 315879 0t0 TCP default-domain.com:https->crawl-66-249-65-91.googlebot.com:42907 (CLOSE_WAIT) I'm still not sure what exactly is causing this all to happen though? I killed that service but %wa and load average remain high, I also stopped mysqld and other services. It really only goes down once I stop httpd altogether, and even then I can't start it without finding remaining hanging httpd processes via "netstat -tulpn", killing those or doing "killall -9 httpd" and after waiting a while for it to cycle through all those then doing /etc/init.d/httpd start

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