Lost connection to MySQL server during query

Posted by Otavio on Stack Overflow See other posts from Stack Overflow or by Otavio
Published on 2009-12-10T23:29:47Z Indexed on 2010/03/28 18:03 UTC
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I have a huge table and I need to process all rows in it. I'm always getting this Lost connection message and I'm not able to reconnect and restore the cursor to the last position it was. This is basically the code I have here:

#
import MySQLdb

class DB:
  conn = None

  def connect(self):
    self.conn = MySQLdb.connect('hostname', 'user', '*****', 'some_table', cursorclass=MySQLdb.cursors.SSCursor)

  def query(self, sql):
    try:
     cursor = self.conn.cursor()
     cursor.execute(sql)
   except (AttributeError, MySQLdb.OperationalError):
     self.connect()
     cursor = self.conn.cursor()
     cursor.execute(sql)
   return cursor
#

#
db = DB()
sql = "SELECT bla FROM foo"
data = db.query(sql)

for row in data:
    do_something(row)
#

But I'm always getting this:

#
Traceback (most recent call last):
  File "teste.py", line 124, in <module>
   run()
 File "teste.py", line 109, in run
   for row in data:
 File "/usr/lib64/python2.5/site-packages/MySQLdb/cursors.py", line 417, in next
   row = self.fetchone()
 File "/usr/lib64/python2.5/site-packages/MySQLdb/cursors.py", line 388, in fetchone
   r = self._fetch_row(1)
 File "/usr/lib64/python2.5/site-packages/MySQLdb/cursors.py", line 285, in _fetch_row
   return self._result.fetch_row(size, self._fetch_type)
   _mysql_exceptions.OperationalError: (2013, 'Lost connection to MySQL server during query')
    Exception _mysql_exceptions.OperationalError: (2013, 'Lost connection to MySQL server during query') in <bound method SSCursor.__del__ of <MySQLdb.cursors.SSCursor object at 0x7f7e3c8da410>> ignored
#

Do you have any idea?

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