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Search found 71 results on 3 pages for 'dna'.

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• Reading and conditionally updating N rows, where N > 100,000 for DNA Sequence processing

  - by makerofthings7

  I have a proof of concept application that uses Azure tables to associate DNA sequences to "something". Table 1 is the master table. It uniquely lists every DNA sequence. The PK is a load balanced hash of the RK. The RK is the unique encoded value of the DNA sequence. Additional tables are created per subject. Each subject has a list of N DNA…

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• DNA Fractal Beggining of Finger Print Detection

  CHAOS GAME REPRESENTATION OF DNA SEQUENCES

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• This Week in Geek History: Birth of NACA, Chemical Composition of DNA Discovered, Telephone Introduced

  - by Jason Fitzpatrick

  Every week we bring you new facts and figures from the annals of Geekdom. This week we’re taking a look at the birth of NASA’s forefather, the composition of DNA, and the first telephone. Latest Features How-To Geek ETC Learn To Adjust Contrast Like a Pro in Photoshop, GIMP, and Paint.NET Have You Ever Wondered…

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• DNA and Quantum computing

  - by Jacques

  I recently(A couple of weeks ago) read an article about the future of processing and how quantum-processors and DNA-processors(DNA-computing) are the future competitors of computing since both will completely outperform the computers of this era. In terms of processing speeds, what do we expect from these two different processing techniques ? …

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• How (and where) to get aligned tRNA sequences (and import it into R)

  - by Tal Galili

  (This is a database / R commands question) I wish (for my thesis work), to import tRNA data into R and have it aligned. My questions are: 1) What resources can I use for the data. 2) What commands might help me with the import/alignment. So far, I found two nice repositories that holds such data: …

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• conversion of DNA to Protein - c structure issue

  - by sam

  I am working on conversion of DNA sequence to Protein sequence. I had completed all program only one error I found there is of structure. dna_codon is a structure and I am iterating over it.In first iteration it shows proper values of structure but from next iteration, it dont show the proper value…

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• Given two sets of DNA, what does it take to computationally "grow" that person from a fertilised egg and see what they become? [closed]

  - by Nicholas Hill

  My question is essentially entirely in the title, but let me add some points to prevent some "why on earth would you want to do that" sort of answers: This is more of a mind experiment than an attempt to implement real software. For fun. Don't worry about computational speed or the number of…

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• Search for string allowing for one mismatches in any location of the string, Python

  - by Vincent

  I am working with DNA sequences of length 25 (see examples below). I have a list of 230,000 and need to look for each sequence in the entire genome (toxoplasma gondii parasite) I am not sure how large the genome is but much more that 230,000 sequences. I need to look for each of my sequences…

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• How can I use R (Rcurl/XML packages ?!) to scrap this webpage ?

  - by Tal Galili

  Hi all, I have a (somewhat complex) webscraping challenge that I wish to accomplish and would love for some direction (to whatever level you feel like sharing) here goes: I would like to go through all the "species pages" present in this link: http://gtrnadb.ucsc.edu/ So for each of them…

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• ASP.Net Custom Field From Query In DataSet

  - by boruchsiper

  I added a new query to a table adapter in a DataSet. This query adds another field to the query whcih is a sum from another table. Here is the full query: SELECT (SELECT COUNT(donationID) AS Expr1 FROM Donations AS da WHERE (dn.donorID = donorID)) AS Count, Solicitor, address1, address2,…

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• Newly configured MSSQL2008, TIME_WAIT but no ESTABLISHED?

  - by 3molo

  Windows 2008 R2, standard. No firewall locally on it. Newly setup because an old SQL2000 had two disks die (or could it be the raid controller?) at the same time. Luckily, I had fresh backups. The databases have been restored, and SP2 for SQL2008 applied. I can see various hosts trying…

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• HFS+ hard drive being mounted as read only

  - by DNA

  This is a recurring problem and occurs a few times a week. I have an external hard drive which is hfs+. Every couple of weeks, for no obviuous reason, when I mount it by pluggin it in to my Ubuntu 11.10, it is read only and I can't copy any files into it. I gksudo nautlius and change…

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• Crontab -e gives me error messages

  - by DNA

  I get a bunch of error messages when I run crontab -e Here are the error messages. And here is my crontab file under `/usr/bin/': # /etc/crontab: system-wide crontab # Unlike any other crontab you don't have to run the `crontab' # command to install the new version when you edit…

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• Strange sound issues with Ubuntu 11.10

  - by DNA

  I am having strange issues with sound and volume with Ubuntu 11.10 I've noticed very often, especially when I get my computer out of sleep, it lacks sound even though the volume slider is cranked all the way up. But when I plug my headphones in and then take them out, it seems…

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• FFMPEG not extracting part of the video

  - by DNA

  I used FFMPEG to extract portion (5 seconds) of a video like this: ffmpeg -ss 00:30:00 -t 00:00:05 -i original.avi cut1.avi and also like this: ffmpeg -ss 1800 -t 5 -i original.avi cut1.avi But what FFMPEG did was create a file starting at 00:30:00 and included the rest of…

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• Crontab file is garbled! HELP!

  - by DNA

  I accidentally deleted my .bashrc file in Ubuntu 11.10. I think I restored it but I have two major issues now: Everything that I type has a red squiggly line under it in this field and the suggestion is a german word. My crontab file is completely garbled and looks like…

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• How can I apply a PSSM efficiently?

  - by flies

  I am fitting for position specific scoring matrices (PSSM aka Position Specific Weight Matrices). The fit I'm using is like simulated annealing, where I the perturb the PSSM, compare the prediction to experiment and accept the change if it improves agreement. This means…

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• ThinkPad: Lenovo's Small Business Notebooks

  Designed specifically for SMB customers, the ThinkPad Edge line of notebook computers brings ThinkPad DNA to a wider audience at a lower price.

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• Generate a set of strings with maximum edit distance

  - by Kevin Jacobs

  Problem 1: I'd like to generate a set of n strings of fixed length m from alphabet s such that the minimum Levenshtein distance (edit distance) between any two strings is greater than some constant c. Obviously, I can use randomization methods (e.g., a genetic…

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• Latex - Apply an operation to every character in a string

  - by hroest

  Hi I am using LaTeX and I have a problem concerning string manipulation. I want to have an operation applied to every character of a string, specifically I want to replace every character "x" with "\discretionary{}{}{}x". I want to do this because I have a…

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• How to code a time delay between plotting points in JFreeCharts?

  - by Javajava

  Is there a way to animate the plotting process of an xy-line chart using JFreeCharts? I want to be able to watch the program draw each line segment and connect them. For example, if I paste this into the TextArea, "gtgtaaacaatatatggcg," I want to watch it…

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• AWK :Extract columns from file: Rows have variable columns

  - by pulikot1

  I have a text file in the following format. Each row has variable number of columns. File: gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein gi|57651109|ref|YP_184912.1|…

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• Convert Double to String without precision loss in javascript

  - by holger

  I would like to convert a floating point variable to a string without losing any precision. I.e. I would like the string to have the same information as my floating point variable contains, since I use the output for further processing (even if it means…

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• What did I do wrong with this function?

  - by Felipe Galdino Campos

  I don't know what I did - it's wrong . Can someone help me? def insert_sequence(dna1, dna2, number): '''(str, str, int) -> str Return the DNA sequence obtained by inserting the second DNA sequence at the given index. (You can assume that…

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• Why doesn't JFreeCharts correctly connect the points in my xy-line graph?

  - by Javajava

  /Each letter A,T,G,C represents a direction for the plot to graph. Specifically, “A” means move right, “T” is move down, “C” is move up, and “G” is move left. When the applet reads A,T,C, it plots the graph correctly. However, when I plot G, the graph is…

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