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  • Error while installing GNU Octave packages

    - by carllacan
    I want to install the GNU Octave optim package, but I keep receiving errors in the process. Apparently I need to install some other packages first, one of which is the general package. However, when I try to, I receive this error: octave:17> pkg install general-1.3.2.tar.gz make: /usr/bin/mkoctfile: Command not found make: *** [__exit__.oct] Error 127 'make' returned the following error: make: Entering directory `/tmp/oct-CGIPo9/general/src' /usr/bin/mkoctfile __exit__.cc make: Leaving directory `/tmp/oct-CGIPo9/general/src' error: called from `pkg>configure_make' in file /usr/share/octave/3.6.1/m/pkg/pkg.m near line 1391, column 9 error: called from: error: /usr/share/octave/3.6.1/m/pkg/pkg.m at line 834, column 5 error: /usr/share/octave/3.6.1/m/pkg/pkg.m at line 383, column 9

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  • GNU Octave - question about graphs and plotting

    - by Twórca
    I've had task to do - to make an graphical interpretation of adding two functions together: sin(8x) and multiplied -sign(x) in Octave, as shown on image above. And I've done that, but I don't know how to get rid of these lines, which link up gaps between separated values (for example, -1 and 1). I don't want them to be seen especially in third graph. To make helping me easier, I'm going to tell you what I did: I made linear series of numbers, from -100 to 99 (tempx). tempy = -sign(tempx) y1 = [tempy tempy tempy tempy] (this line is kinda funny, if you know Polish language) Creating y2 - sinus function y3 = y2 + y1 Plotting, subplotting... Screenshot Awaiting for instructions...

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  • "os x" + octave + Miscellaneous Package: install errors

    - by Mike Briggs
    Trying to install the Miscellaneous Package into Octave, I get this string of errors: octave-3.2.3:17 pkg install miscellaneous-1.0.9.tar.gz configure: error: in /var/folders/0o/0ox7a-rlFVGd8pZnuF96sE+++TM/-Tmp-/oct-zTlMUh/miscellaneous-1.0.9/src': configure: error: C compiler cannot create executables See config.log' for more details. the configure script returned the following error: checking for gcc... gcc checking for C compiler default output file name... error: called from `pkgconfigure_make' in file /Applications/Octave.app/Contents/Resources/share/octave/3.2.3/m/pkg/pkg.m near line 1240, column 2 error: called from: error: /Applications/Octave.app/Contents/Resources/share/octave/3.2.3/m/pkg/pkg.m at line 714, column 5 error: /Applications/Octave.app/Contents/Resources/share/octave/3.2.3/m/pkg/pkg.m at line 287, column 7 What is this trying to tell me? Where should I go? Mike Briggs

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  • Building ATLAS (and later Octave w/ ATLAS)

    - by David Parks
    I'm trying to set up ATLAS (so I can later compile octave with ATLAS support). If I'm correct, I still need to build this manually due to the environment specific optimizations. I do see a package for ATLAS, but it looks like it's using the cross platform generic build options (e.g. "it'll be slow"). So, running the configure script as described in the docs seems to go poorly. As a java developer I never do well at making heads or tails of errors in these build processes. Am I missing dependencies (if so is there any documentation on what I need)? allusers@vbubuntu:~/Downloads/atlas3.10.1/build_vbubuntu$ ../configure -b 64 -D c -DPentiumCPS=3000 --with-netlib-lapack-tarfile=/home/allusers/Downloads/lapack-3.5.0.tgz make: `xconfig' is up to date. ./xconfig -d s /home/allusers/Downloads/atlas3.10.1/build_vbubuntu/../ -d b /home/allusers/Downloads/atlas3.10.1/build_vbubuntu -b 64 -D c -DPentiumCPS=3000 -Si lapackref 1 OS configured as Linux (1) Assembly configured as GAS_x8664 (2) Vector ISA Extension configured as SSE3 (6,448) ERROR: enum fam=3, chip=2, mach=0 make[3]: *** [atlas_run] Error 44 make[2]: *** [IRunArchInfo_x86] Error 2 Architecture configured as Corei1 (25) ERROR: enum fam=3, chip=2, mach=0 make[3]: *** [atlas_run] Error 44 make[2]: *** [IRunArchInfo_x86] Error 2 Clock rate configured as 2350Mhz ERROR: enum fam=3, chip=2, mach=0 make[3]: *** [atlas_run] Error 44 make[2]: *** [IRunArchInfo_x86] Error 2 Maximum number of threads configured as 4 Parallel make command configured as '$(MAKE) -j 4' ERROR: enum fam=3, chip=2, mach=0 make[3]: *** [atlas_run] Error 44 make[2]: *** [IRunArchInfo_x86] Error 2 Cannot detect CPU throttling. rm -f config1.out make atlas_run atldir=/home/allusers/Downloads/atlas3.10.1/build_vbubuntu exe=xprobe_comp redir=config1.out \ args="-v 0 -o atlconf.txt -O 1 -A 25 -Si nof77 0 -V 448 -b 64 -d b /home/allusers/Downloads/atlas3.10.1/build_vbubuntu" make[1]: Entering directory `/home/allusers/Downloads/atlas3.10.1/build_vbubuntu' cd /home/allusers/Downloads/atlas3.10.1/build_vbubuntu ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 25 -Si nof77 0 -V 448 -b 64 -d b /home/allusers/Downloads/atlas3.10.1/build_vbubuntu > config1.out make[2]: gfortran: Command not found make[2]: *** [IRunF77Comp] Error 127 make[2]: g77: Command not found make[2]: *** [IRunF77Comp] Error 127 make[2]: f77: Command not found make[2]: *** [IRunF77Comp] Error 127 Unable to find usable compiler for F77; abortingMake sure compilers are in your path, and specify good compilers to configure (see INSTALL.txt or 'configure --help' for details)make[1]: *** [atlas_run] Error 8 make[1]: Leaving directory `/home/allusers/Downloads/atlas3.10.1/build_vbubuntu' make: *** [IRun_comp] Error 2 ERROR 512 IN SYSCMND: 'make IRun_comp args="-v 0 -o atlconf.txt -O 1 -A 25 -Si nof77 0 -V 448 -b 64"' mkdir src bin tune interfaces mkdir: cannot create directory ‘src’: File exists mkdir: cannot create directory ‘bin’: File exists mkdir: cannot create directory ‘tune’: File exists mkdir: cannot create directory ‘interfaces’: File exists make: *** [make_subdirs] Error 1 make -f Make.top startup make[1]: Entering directory `/home/allusers/Downloads/atlas3.10.1/build_vbubuntu' Make.top:1: Make.inc: No such file or directory Make.top:325: warning: overriding commands for target `/AtlasTest' Make.top:76: warning: ignoring old commands for target `/AtlasTest' make[1]: *** No rule to make target `Make.inc'. Stop. make[1]: Leaving directory `/home/allusers/Downloads/atlas3.10.1/build_vbubuntu' make: *** [startup] Error 2 mv: cannot move ‘lapack-3.5.0’ to ‘../reference/lapack-3.5.0’: Directory not empty mv: cannot stat ‘lib/Makefile’: No such file or directory ../configure: 450: ../configure: cannot create lib/Makefile: Directory nonexistent ../configure: 451: ../configure: cannot create lib/Makefile: Directory nonexistent ../configure: 452: ../configure: cannot create lib/Makefile: Directory nonexistent ../configure: 453: ../configure: cannot create lib/Makefile: Directory nonexistent ../configure: 509: ../configure: cannot create lib/Makefile: Directory nonexistent DONE configure

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  • How to input 64-bit hex values in octave

    - by Chris Ashton
    I'm trying to use Octave as a programmer's calculator. I want to input a 64-bit pointer, but when I do apparently the 64-bit value gets silently truncated to 32-bit: octave:44> base_ptr=0x1010101020202020 base_ptr = 538976288 octave:45> uint64(base_ptr) ans = 538976288 octave:46> printf("%lx\n", base_ptr) 20202020 So it seems like it's truncated the input value to the low 32-bits. I would use scanf, but the docs say it should only be used internally. How can I input the full 64-bit value? Alternately, is there some awesome free programmer's calculator out there for Windows? (I know Windows calculator has a programmer's mode but I would like arbitrary variable support). I tried using my ti-89 but it also doesn't support 64-bit hex.

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  • How can I run Octave under Emacs on Windows (Vista)?

    - by Arlie Capps
    Hello, I installed Emacs 23.1.1 and Octave 3.2.3 on my computer running Vista. To make Emacs find Octave, and to make Octave's prompt what Emacs expects, I added the following to the end of my .emacs file: (setq inferior-octave-program "C:/Octave/3.2.3_gcc-4.4.0/bin/octave-3.2.3.exe") (setq inferior-octave-startup-args (list "--eval" "PS1('octave:\# ');" "--persist")) When I do M-x run-octave, I get the "wait" cursor. I can see (using procexp) that Octave starts up as a child process to Emacs, but Emacs and Octave do not talk. Any insight would be much appreciated.

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  • In what (small) ways can I modify Octave's compile options to enhance it without breaking it?

    - by irrational John
    If the title to this question seems a bit vague, I am sorry. But I wasn't sure how to distill what I am attempting to do into a single sentence. A few weeks back I learned that I could build and install recent releases of Octave on an Ubuntu 12.04 system by following the steps below. Install the tools needed to compile, link, and run octave. For Ubuntu the commands below have worked for me. sudo apt-get build-dep octave3.2 sudo apt-get install build-essential gnuplot gtk2-engines-pixbuf sudo apt-get install libfontconfig-dev bison Next, download the source code for an Octave release from the Gnu Project Archives for Octave and unpack the archive into a folder on your system. Use the commands below to build, check, and install octave. ./configure make make check sudo make install Unfortunately it turns out that the above builds an Octave that contains all the debugging symbol tables. The object files alone are huge taking up around 1.7 GB. The current Octave documentation suggests To compile without debugging symbols try the command make CFLAGS=-O CXXFLAGS=-O LDFLAGS= instead of just make. However, when I tried this it did not work. The -g option was still used for the compiles. For the heck of it I instead tried ./configure CFLAGS=-O CXXFLAGS=-O and this did work. (Instead of ~1.7GB the result of the build now takes up around 253MB). My questions are Is this actually the correct (recommended?) method to use to compile Octave without debugging symbols (i.e. without -g)? How would I compile Octave so it uses x86_64 rather than x86? Note: I am not asking how to compile Octave to use the (experimental) 64-bit integers for array dimensions. I just want to allow the compiler to use the extra registers and word sizes available when an app runs in 64-bit mode. Is a (more) complete list available for the directives used with the Octave Makefile? I have only seen make, make check, and make install documented. But apparently make distclean is also allowed. (It removes the compilation results so you can do a complete rebuild of everything.) I'm wondering what else might be available. FWIW, I have tried using ./configure CFLAGS="-O3 -mtune=core2 -m64" CXXFLAGS="-O3 -mtune=core2 -m64" and, surprisingly, it not only appeared to build, but also ran and passed the make check tests. The ./configure script even gave me the (deceptively?) reassuring message "Octave is now configured for x86_64-unknown-linux-gnu". But of course that's not the same thing as saying it actually "works". Is there a recommended way to enable Octave to run as an x86_64 app? I have also tried looking inside the Octave Makefile to see if I could decipher what command line directives it accepts. I got nowhere. I have not a single clue as to how that Makefile does whatever it is that it does.

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  • Gnuplot with octave produces only entirely black bar diagrams

    - by Lambda Dusk
    My problem is the following: On my system (Linux Mint 14), the normal octave and gnuplot packages only produce completely black bar diagrams: I have tried to change the colours in any way I could imagine, but no avail: bar(xbin, yy, 'barwidth', 1, 'facecolor', 'r', 'edgecolor', 'b'); xlabel('x_i'); ylabel('p_i'); print -deps bars.eps However, when I plot the graph with the command graphics_toolkit fltk; It looks fine - but fltk doesn't either understand umlauts or LaTeX-style formula notation like p_i (necessary for captions and labels). Maybe I haven't configured something correctly. I just installed octave from the repos and thought it would work. Anyone can help?

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  • GUI frontend for octave on Linux

    - by Homunculus Reticulli
    I recently installed Octave on my Ubuntu 10.0.4 LTS box. Out of the box, this is a console only app. This makes the learning curve a bit steeper than what I would like it to be, and I am looking for a GUI frontend that looks more like Matlab. I have seen a few project (QtOctave etc), but most of them seem either discontinued, no longer under active development, or are no longer free. Can anyone recommend a good open source/free GUI for Octave on Linux? Preferably, one that is as close as possible to Matlab's GUI.

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  • Octave datatypes - float & double

    - by mush
    I'm writing a framework for writing HDF files with JAVA (Using some existing framework). I need to keep compatibility with octave. That is, octave should be able to read the files my framework writes and vice versa. My question is, does Octave have two data types - float and double or it uses only double? thanks

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  • Get an yerror plot without a line in Octave

    - by queueoverflow
    I'd like to print a plot with y-error-bars and just plain points. My current Octave script looks like this: errorbar(x_list, y_list, Delta_y_list, "~.x"); title("physikalisches Pendel"); xlabel("a^2 [m^2]"); ylabel("aT^2 [ms^2]"); print -dpdf plot.pdf The plot I get has a line, although I specified the .x style option: How can I get rid of that line? And the ylabel is in the scale as well, is there some way to fix that?

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  • Loopless function calls on vector/matrix members in Matlab/Octave

    - by Sint
    I came into matrix world from loop world(C, etc) I would like to call a function on each individual member of a vector/matrix, and return the resulting vector/matrix. This is how I currently do it: function retval = gauss(v, a, b, c) for i = 1:length(v) retval(i) = a*(e^(-(v(i)-b)*(v(i)-b)/(2*c*c))); endfor endfunction Example usage: octave:47> d=[1:1000]; octave:48> mycurve=gauss(d, 1, 500, 100); Now, all advice on Matlab/Octave says: STOP whenever you catch yourself using loops and think of a better way of doing it. Thus, my question: Can one call a function on each member of a vector/matrix and return the result in a new vector/matrix all at once without using explicit loops? That is I am looking for something like this: function retval = newfun(v) retval = 42*(v^23); endfunction Perhaps, it is just syntactic sugar, that is all, but still would be useful to know.

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  • Reading binary file with Octave

    - by Anthony Blake
    I'm trying to a binary file consisting of floats with Octave (on OS X), but I'm getting the following error: octave-3.2.3:2> load Input.dat R -binary error: load: failed to read matrix from file `Input.dat' The file was written like so: std::ofstream fout("Input.dat", std::ios::trunc | std::ios::binary); fout.write(reinterpret_cast<char*>(Buf), N*sizeof(double)); fout.close(); Any idea what could be going wrong here?

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  • Using 'load' in octave

    - by lollygagger
    Is there a way to tell the load function to only load until a certain line? I want to read in a data file and assign the numbers to an array, however, I want it to stop after it has created a 200 X 200. Could I also do this with a do-while loop and fgetl? When I try to use fgetl(fid, len) and give it 'len', it does not obey :-/ How can I tell octave to ignore the comment lines in an input file? They are '#' characters, so I figured octave would just automatically ignore them, but not so... Thanks.

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  • Octave: importing a large matrix in csv format

    - by Massagran
    I'm trying to import a matrix (about 80.000 rows) from a csv file to Octave. The obvious solution seems something like: load("-ascii","relative_directory/the_file.csv") or maybe renaming the file and trying: load("-ascii", "relative_directory/the_file.txt") Yet I keep getting the error: load: failed to read matrix from file "relative_directory/the_file.csv" or .txt without anymore details. Any tips are appreciated.

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  • Typecast to an int in Octave/Matlab

    - by Leif Andersen
    I need to call the index of a matrix made using the linspace command, and based on somde data taken from an oscilloscope. Because of this, the data inputed is a double. However, I can't really call: Time[V0Found] where V0Found is something like 5.2 however, taking index 5 is close enough, so I need to drop the decimal. I used this equation to drop the decimal: V0FoundDec = V0Found - mod(V0Found,1) Time[V0FoundDec] However, eve though that drops the decimal, octave still complains about it. So, what can I do to typecast it to an int? Thank you.

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  • Extrapolation using fft in octave

    - by CFP
    Using GNU octave, I'm computing a fft over a piece of signal, then eliminating some frequencies, and finally reconstructing the signal. This give me a nice approximation of the signal ; but it doesn't give me a way to extrapolate the data. Suppose basically that I have plotted three periods and a half of f: x -> sin(x) + 0.5*sin(3*x) + 1.2*sin(5*x) and then added a piece of low amplitude, zero-centered random noise. With fft/ifft, I can easily remove most of the noise ; but then how do I extrapolate 3 more periods of my signal data? (other of course that duplicating the signal). The math way is easy : you have a decomposition of your function as an infinite sum of sines/cosines, and you just need to extract a partial sum and apply it anywhere. But I don't quite get the programmatic way... Thanks!

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  • Using GNU Octave FFT functions

    - by CFP
    Hello world! I'm playing with octave's fft functions, and I can't really figure out how to scale their output: I use the following (very short) code to approximate a function: function y = f(x) y = x .^ 2; endfunction; X=[-4096:4095]/64; Y = f(X); # plot(X, Y); F = fft(Y); S = [0:2047]/2048; function points = approximate(input, count) size = size(input)(2); fourier = [fft(input)(1:count) zeros(1, size-count)]; points = ifft(fourier); endfunction; Y = f(X); plot(X, Y, X, approximate(Y, 10)); Basically, what it does is take a function, compute the image of an interval, fft-it, then keep a few harmonics, and ifft the result. Yet I get a plot that is vertically compressed (the vertical scale of the output is wrong). Any ideas? Thanks!

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  • fink hangs while compiling Octave on OS X

    - by Mark Bennett
    Disclaimer: I'm totally new to Fink. I'm trying to install Octave (Matlab open source clone) on Mountain Lion using Fink, following instructions at http://wiki.octave.org/Octave_for_MacOS_X It's a new installation of Fink, and I've also installed X11 per instructions. I'm using this command (which I believe is correct since everything's 64 bit now): sudo fink install octave-atlas It's hanging after a while, showing this as it's last output: ... Setting up xft2-dev (2.2.0-2) ... Clearing dependency_libs of .la files being installed Reading buildlock packages... All buildlocks accounted for. /sw/bin/dpkg-lockwait -i /sw/fink/dists/stable/main/binary-darwin-x86_64/x11/xinitrc_1.5-1_darwin-x86_64.deb (Reading database ... 14871 files and directories currently installed.) Preparing to replace xinitrc 1.5-1 (using .../xinitrc_1.5-1_darwin-x86_64.deb) ... Unpacking replacement xinitrc ... Setting up xinitrc (1.5-1) ... I did notice the process name on the terminal's tab was "sort", so the second time I hit this I tried Control-D (End-of-File), and this did seem to unstick it. I'm wondering if there's some misformed command and sort was trying to read from stdin? Questions: 1: Has anybody else seen this? Google wasn't helpful 2: Fink outputs a LOT of warnings and errors.... is that normal? 3: wondering if anybody's got Fink to compile Octave on Mountain Lion specifically? And whether they used just "octave" or "octave-atlas". Or if you got it working with MacPorts or Homebrew? 4: later Fink failed with "Failed: phase compiling: gnuplot-minimal-4.6.1-1 failed". I haven't started googling that yet... but wondering if anybody's see that? Also tried MacPorts but got other errors with Octave. And reading online it looks like HomeBrew also has issues with Octave on Mountain Lion. 5: Generally looking for anybody who's got Octave running on Mountain Lion with any of the package managers. I've been at this for a couple days ;-)

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  • Octave / Matlab: How to plot the roots of a polynomial

    - by Tom
    Hi everyone, Im trying to plot the roots of a polynomial, and i just cant get it. First i create my polynomial p5 = [1 0 0 0 0 -1] %x^5 - 1 r5 = roots(p5) stem (p5) Im using the stem function, but I would like to remove the stems, and just get the circle around the roots. Is this possible, is stem the right command? Thanks in advance, PS: This is not homework, but very close, will tag it if requested.

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  • Octave: Multiple submatrices from a matrix

    - by fbrereto
    I have a large matrix from which I would like to gather a collection of submatrices. If my matrix is NxN and the submatrix size is MxM, I want to collect I=(N - M + 1)^2 submatrices. In other words I want one MxM submatrix for each element in the original matrix that can be in the top-left corner of such a matrix. Here's the code I have: for y = 1:I for x = 1:I index = (y - 1) * I + x; block_set(index) = big_mat(x:x+M-1, y:y+M-1) endfor endfor The output if a) wrong, and b) implying there is something in the big_mat(x:x+M-1, y:y+M-1) expression that can get me what I want without needing the two for loops. Any help would be much appreciated

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  • two arrays defining 2d coordinates, as array indices, in matlab/octave

    - by Jason
    Hi, I have a 2D array, call it 'A'. I have two other 2D arrays, call them 'ix' and 'iy'. I would like to create an output array whose elements are the elements of A at the index pairs provided by x_idx and y_idx. I can do this with a loop as follows: for i=1:nx for j=1:ny output(i,j) = A(ix(i,j),iy(i,j)); end end How can I do this without the loop? If I do output = A(ix,iy), I get the value of A over the whole range of (ix)X(iy). Thank you, Jason

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  • How can I flush the output of disp in Octave?

    - by Nathan Fellman
    I have a program in Octave that has a loop - running a function with various parameters, not something that I can turn into matrices. At the beginning of each iteration I print the current parameters using disp. The first times I ran it I had a brazillion warnings, and then I also got these prints. Now that I cleaned them up, I no longer see them. My guess is that they're stuck in a buffer, and I'll see them when the program ends or the buffer fills. Is there any way to force a flush of the print buffer so that I can see my prints?

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