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  • Saving "heavy" figure to PDF in MATLAB - rendering problem

    - by yuk
    I generate a figure in MATLAB with lot amount of points (100000+) and want to save it into a PDF file. With zbuffer or painters renderer I've got very large and slowly opened file (over 4 Mb) - all points are in vector format. Using OpenGL renderer rasterize the figure in PDF, ok for the plot, but not good for text labels. The file size is about 150 Kb. Try this simplified code, for example: x=linspace(1,10,100000); y=sin(x)+randn(size(x)); plot(x,y,'.') set(gcf,'Renderer','zbuffer') print -dpdf -r300 testpdf_zb set(gcf,'Renderer','painters') print -dpdf -r300 testpdf_pa set(gcf,'Renderer','opengl') print -dpdf -r300 testpdf_op The actual figure is much more complex with several axes and different types of plots. Is there a way to rasterize the figure, but keep text labels as vectors? Another problem with OpenGL is that is does not work in terminal mode (-nosplash -nodesktop) under Mac OSX. Looks like OpenGL is not supported. I have to use terminal mode for automation. The MATLAB version I run is 2007b. Mac OSX server 10.4.

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  • GPIB connection to external device using MATLAB

    - by hkf
    Is there a way to establish a GPIB connection using MATLAB without the instrument control Tool box? (I don't have it). Also is there a way for MATLAB to know what the external device's RS232 parameter values are ( Baud rate, stop bit etc..). For the RS232 connection I have the following code: % This function is meant to send commands to Potentiostat Model 263A. % A run includes turning the cell on, reading current for time t1, turning % the cell off, waiting for time t2. % t1 is the duration [secs] for which the Potentiostat must run (cell is on) % t2 is the duration [secs] to on after off % n is the number of runs % port is the serial port name such as COM1 function [s] = Potentiostat_control(t1,t2,n) port = input('type port name such as COM1', 's') s = serial(port); set(s,'BaudRate', 9600, 'DataBits', 8, 'Parity', 'even', 'StopBits', 2 ,'Terminator', 'CR/LF'); fopen(s) %fprintf(s,'RS232?') disp(['Total runs requested = ' num2str(n)]) disp('i denotes number of runs executed so far..'); for i=1:n i %data1 = query(s, '*IDN?') fprintf(s,'%s','CELL 1'); % sends the command 'CELL 1' %fprintf(s,'%s','READI'); pause(t1); fprintf(s,'%s','CELL 0'); %fprintf(s,'%s','CLEAR'); pause(t2); end fclose(s)

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  • Calculate posterior distribution of unknown mis-classification with PRTools in MATLAB

    - by Samuel Lampa
    I'm using the PRTools MATLAB library to train some classifiers, generating test data and testing the classifiers. I have the following details: N: Total # of test examples k: # of mis-classification for each classifier and class I want to do: Calculate and plot Bayesian posterior distributions of the unknown probabilities of mis-classification (denoted q), that is, as probability density functions over q itself (so, P(q) will be plotted over q, from 0 to 1). I have that (math formulae, not matlab code!): P(q|k,N) = Posterior * Prior / Normalization constant = P(k|q,N) * P(q|N) / P(k|N) The prior is set to 1, so I only need to calculate the posterior and normalization constant. I know that the posterior can be expressed as (where B(N,k) is the binomial coefficient): P(k|q,N) = B(N,k) * q^k * (1-q)^(N-k) ... so the Normalization constant is simply an integral of the posterior above, from 0 to 1: P(k|N) = B(N,k) * integralFromZeroToOne( q^k * (1-q)^(N-k) ) (The Binomial coefficient ( B(N,k) ) can be omitted thoughappears in both the posterior and normalization constant, so it can be omitted.) Now, I've heard that the integral for the normalization constant should be able to be calculated as a series ... something like: k!(N-k)! / (N+1)! Is that correct? (I have some lecture notes from with this series, but can't figure out if it is for the normalization constant integral, or for the posterior distribution of mis-classification (q)) Also, hints are welcome as how to practically calculate this? (factorials are easily creating truncation errors right?) ... AND, how to practically calculate the final plot (the posterior distribution over q, from 0 to 1).

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  • Saving "heavy" image to PDF in MATLAB - rendering problem

    - by yuk
    I generate a figure in MATLAB with lot amount of points (100000+) and want to save it into a PDF file. With zbuffer or painters renderer I've got very large and slowly opened file (over 4 Mb) - all points are in vector format. Using OpenGL renderer rasterize the figure in PDF, ok for the plot, but not good for text labels. The file size is about 150 Kb. Try this simplified code, for example: x=linspace(1,10,100000); y=sin(x)+randn(size(x)); plot(x,y,'.') set(gcf,'Renderer','zbuffer') print -dpdf -r300 testpdf_zb set(gcf,'Renderer','painters') print -dpdf -r300 testpdf_pa set(gcf,'Renderer','opengl') print -dpdf -r300 testpdf_op The actual figure is much more complex with several axes and different types of plots. Is there a way to rasterize the figure, but keep text labels as vectors? Another problem with OpenGL is that is does not work in terminal mode (-nosplash -nodesktop) under Mac OSX. Looks like OpenGL is not supported. I have to use terminal mode for automation. The MATLAB version I run is 2007b. Mac OSX server 10.4.

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  • Are There Any 3rd-Party Free Deployment Templates for Visual Studio Express Edition

    - by Peter Lee
    Hi, Due to the lack of Deployment functionality of Visual Studio Express edition, I'm here asking if anyone can recommend a very nice free Deployment template for the express edition. I'm mainly working with C# desktop project. I know that there is still ClickOnce deployment in the Express edition, but it seems to me that it is not so difficult to control, which means, you do "click once", then the tool will give you a bunch of files out of my control, not so easy to maintain. Thanks. Peter

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  • vectorizing loops in Matlab - performance issues

    - by Gacek
    This question is related to these two: http://stackoverflow.com/questions/2867901/introduction-to-vectorizing-in-matlab-any-good-tutorials http://stackoverflow.com/questions/2561617/filter-that-uses-elements-from-two-arrays-at-the-same-time Basing on the tutorials I read, I was trying to vectorize some procedure that takes really a lot of time. I've rewritten this: function B = bfltGray(A,w,sigma_r) dim = size(A); B = zeros(dim); for i = 1:dim(1) for j = 1:dim(2) % Extract local region. iMin = max(i-w,1); iMax = min(i+w,dim(1)); jMin = max(j-w,1); jMax = min(j+w,dim(2)); I = A(iMin:iMax,jMin:jMax); % Compute Gaussian intensity weights. F = exp(-0.5*(abs(I-A(i,j))/sigma_r).^2); B(i,j) = sum(F(:).*I(:))/sum(F(:)); end end into this: function B = rngVect(A, w, sigma) W = 2*w+1; I = padarray(A, [w,w],'symmetric'); I = im2col(I, [W,W]); H = exp(-0.5*(abs(I-repmat(A(:)', size(I,1),1))/sigma).^2); B = reshape(sum(H.*I,1)./sum(H,1), size(A, 1), []); But this version seems to be as slow as the first one, but in addition it uses a lot of memory and sometimes causes memory problems. I suppose I've made something wrong. Probably some logic mistake regarding vectorizing. Well, in fact I'm not surprised - this method creates really big matrices and probably the computations are proportionally longer. I have also tried to write it using nlfilter (similar to the second solution given by Jonas) but it seems to be hard since I use Matlab 6.5 (R13) (there are no sophisticated function handles available). So once again, I'm asking not for ready solution, but for some ideas that would help me to solve this in reasonable time. Maybe you will point me what I did wrong.

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  • Plot vectors with labels in matlab

    - by mad
    I have a Nx62 matrix with N 62-D vectors and a NX1 vector with the labels for the vectors. I am trying to plot these vectors with their labels because I want to see the behavior of these classes when plotted in a 62-dimensional space. The vectors belong to three classes according to the labels of a NX1 vector cited before. How to to that in matlab? when i do plot(vector,classes) the result is very weird to analyse, how to put labels in the graph? The code i am using to get the labels, vectors and plotting is the following: %labels is a vector with labels, vectors is a matrix where each line is a vector [labels,vectors]=libsvmread('features-im1.txt'); when I plot a three dimensional vector is simple a=[1,2,3] plot(a) and then I get the result but now i have a set of vectors and a set of labels, and i want to see the distribution of them, i want to plot each of these labels but also want to identify their classes. How to do that in matlab? EDIT: This code is almost working. The problem is the fact that for each vector and class the plot will assign a color. I just want three colors and three labels, one per class. [class,vector]=libsvmread('features-im1.txt'); %the plot doesn't allow negative and 0 values in the label class=class+2; labels = {'class -1','class 0','class 1'}; h = plot(vector); legend(h,labels{class})

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  • Introduction to vectorizing in MATLAB - any good tutorials?

    - by Gacek
    I'm looking for any good tutorials on vectorizing (loops) in MATLAB. I have quite simple algorithm, but it uses two for loops. I know that it should be simple to vectorize it and I would like to learn how to do it instead of asking you for the solution. But to let you know what problem I have, so you would be able to suggest best tutorials that are showing how to solve similar problems, here's the outline of my problem: B = zeros(size(A)); % //A is a given matrix. for i=1:size(A,1) for j=1:size(A,2) H = ... %// take some surrounding elements of the element at position (i,j) (i.e. using mask 3x3 elements) B(i,j) = computeSth(H); %// compute something on selected elements and place it in B end end So, I'm NOT asking for the solution. I'm asking for a good tutorials, examples of vectorizing loops in MATLAB. I would like to learn how to do it and do it on my own.

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  • Using Matlab to find maxima for data with a lot of noise

    - by jimbo
    I have noisy data set with three peaks in Matlab and want to do some image processing on it. The peaks are about 5-9 pixels wide at the base, in a 50 x 50 array. How do I locate the peaks? Matlab is very new to me. Here is what I have so far... For my original image, let's call it "array", I tried J = fspecial('gaussian',[5 5], 1.5); C = imfilter(array, J) peaks = imregionalmax(C); but there is still some noise along the baseline between the peaks so I end up getting a ton of local max that are really just noise values. (I tried playing with the size of the filter, but that didn't help.) I also tried peaks = imextendedmax(C,threshold); where the threshold was determined visually... which works but is definitely not a good way to do it since it's not that robust obviously. So, how do I locate these peaks in a robust way? Thanks.

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  • Using MATLAB's plotting features as an interactive part of a Fortran program

    - by ldigas
    Although many of you will have a decent idea of what I'm aiming at, just from reading the title -- allow me a simple introduction still. I have a Fortran program - it consists of a program, some internal subroutines, 7 modules with its own procedures, and ... uhmm, that's it. Without going into much detail, for I don't think it's necessary at this point, what would be the easiest way to use MATLAB's plotting features (mainly plot(x,y) with some customizations) as an interactive part of my program ? For now I'm using some of my own custom plotting routines (based on HPGL and Calcomp's routines), but just as part of an exercise on my part, I'd like to see where this could go and how would it work (is it even possible what I'm suggesting?). Also, how much effort would it take on my part ? I know this subject has been rather extensively described in many "tutorials" on the net, but for some reason I have trouble finding the really simple yet illustrative introductory ones. So if anyone can post an example or two, simple ones, I'd be really grateful. Or just take me by the hand and guide me through one working example. platform: IVF 11.something :) on Win XP SP2, Matlab 2008b

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  • FFT and IFFT on 3D matrix (Matlab)

    - by SteffenDM
    I have a movie with 70 grayscale frames in MATLAB. I have put them in a 3-D matrix, so the dimensions are X, Y and time. I want to determine the frequencies in the time dimension, so I have to calculate the FFT for every point in the 3rd dimension. This is not a problem but I have to return the images to the original form with ifft. In a normal situation this would be true: X = ifft(fft(X)), but this is not the case it seems in MATLAB when you work with multidimensional data. This is the code I use: for i = 1:length y(:, :, i) = [img1{i, level}]; %# take each picture from an cell array and put it end %# and put it in 3D array y2 = ifft(fft(y, NFFT,3), NFFT, 3); %# NFFT = 128, the 3 is the dimension in which i want %# to calculate the FFT and IFFT y is 480x640x70, so there are 70 images of 640x480 pixels. If I use only fft, y2 is 480x640x128 (this is normal because we want 128 points with NFFT). If I use fft and ifft, y2 is 480x640x128 pixels. This is not normal, the 128 should be 70 again. I tried to do it in just one dimension by using 2 for loops and this works fine. The for loops take to much time, though.

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  • skip reading headers in matlab

    - by Paul
    I had a similar question. but what i am trying now is to read files in .txt format into matlab. My problem is with the headers. Manytimes due to errors the system rewrites the headers in the middle of file and then matlab cannot read the file. IS there a way to skip it? I know i can skip reading some characters if i know what the character is. here is the code i am using. [c,pathc]=uigetfile({'*.txt'},'Select the data','V:\data); file=[pathc c]; data= dlmread(file, ',', 1,4); this way i let the user pick the file. My files are huge typically [ 86400 125 ] so naturally it has 125 header fields or more depends on files. Thanks Because the files are so big i cannot copy , but its in format like day time col1 col2 col3 col4 ............................... 2/3/2010 0:10 3.4 4.5 5.6 4.4 ............................... .................................................................. .................................................................. and so on

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  • Production deployment to EC2 with minimal downtime

    - by jensendarren
    I have a simple web application deployed on a large instance with EC2. I now want to deploy the latest code to this server but I want to do this in a way which minimizes downtime and is a smooth as possible for the end user. Here is my plan: Fire up another large instance Install all the software layers on that instance Restore and attach an EBS drive to the instance Deploy our latest production ready code on the new instance Run all tests (including manual testing of the application) (If tests pass) Put a "Site Under Maintenance" notice on the live site. Backup the EBS instance on the live site Detach the EBS instance from the new server and replace with the latest backup Use ec2-associate-address to move the IP address to the new instance Sit back and wait for traffic to start flowing though the new instance Terminate the old instance Does this seem like a good strategy? Are there any tutorials or books that might cover this topic? I have already read Cloud Application Architectures by George Reese, which is an excellent book, but does not cover deployment. Additionally, I know that there are tools that can help with this like RightScale or enStratus which I will use when I start using more than one instance.

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  • Microsoft Deployment Toolkit 2012 Error

    - by Jacob Schaer
    I just started with MDT2012 recently in hopes of eventually getting away with using Ghost to deploy all of our department computers. When I test deploy in VirtualBox, it deploys the OS properly, but stops because of a network driver failure (it gets the "could not allocate resources" issue). On physical hardware (Latitude E6500, Optiplex 980, and an older Latitude) it gets through the multicast and stops immediately after with: "Setup was unable to create a new system partition or locate an existing system partition. See the Setup log files for more information" I've looked at the logs and never see anything really of note. Originally I was using DriverPacks from DriverPacks.net, but thinking it was a driver issue, I switched over to using Dell's cab driver packs. Still the same issue. I check and it did the HDD is all fine - it was properly partitioned, set to bootable, and was loaded with all the proper OS installer files. I'm using a flash drive to do the install - when I make changes to the deployment share I rebuild and copy the ISO to the drive, then use YUMI multiboot to start the ISO (probably irrelevant).

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  • Deployment and monitoring tools for java/tomcat/linux environment

    - by Ran
    I'm a developer for many years, but don't have tons of experience in ops, so apology if this is a newbe question. In my company we run a web service written in Java mainly based on a Tomcat web server. We have two datacenters with about 10 hosts each. Hosts are of several types: Dababase, Tomcats, some offline java processes, memcached servers. All hosts are Linux CentOS Up until now, when releasing a new version to production we've been using a set of inhouse shell script that copy jars/wars and restart the tomcats. The company has gotten bigger so it has become more and more difficult operating all this and taking code from development, through QA, staging and to production. A typical release many times involves human errors that cost us precious uptime. Sometimes we need to revert to last known good and this isn't easy to say the least... We're looking for a tool, a framework, a solution that would provide the following: Supports the given list of technology (java, tomcat, linux etc) Provides easy deployment through different stages, including QA and production Provides configuration management. E.g. setting server properties (what's the connection URL of each host etc), server.xml or context configuration etc Monitoring. If we can get monitoring in the same package, that'll be nice. If not, then yet another tool we can use to monitor our servers. Preferably, open source with tons of documentation ;) Can anyone share their experience? Suggest a few tools? Thanks!

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  • Unauthorized Access Exception using Web Deploy to Site when the site root is a UNC path

    - by Peter LaComb Jr.
    I am trying to use Web Deploy to deploy a site where the Site is rooted on a UNC path instead of a local drive. This is because I want to have a shared configuration, and have all servers point to the same UNC for content. That would allow me to deploy to one server and have all servers updated at the same time. I've created a share with everyone and users read/write. The NTFS permissions have the ID of the appDomain account as full control, and that is the same account that is configured as the specific user in Management Service Delegation. I can log on to the destination server as that ID, access the share and create/delete files. However, I'm getting the following exception in my Microsoft Web Deploy log on the destination server: User: Client IP: 192.168.62.174 Content-Type: application/msdeploy Version: 9.0.0.0 MSDeploy.VersionMin: 7.1.600.0 MSDeploy.VersionMax: 9.0.1631.0 MSDeploy.Method: Sync MSDeploy.RequestId: c060c823-cdb4-4abe-8294-5ffbdc327d2e MSDeploy.RequestCulture: en-US MSDeploy.RequestUICulture: en-US ServerVersion: 9.0.1631.0 Skip: objectName="^configProtectedData$" Provider: auto, Path: A tracing deployment agent exception occurred that was propagated to the client. Request ID 'c060c823-cdb4-4abe-8294-5ffbdc327d2e'. Request Timestamp: '8/23/2012 11:01:56 AM'. Error Details: ERROR_INSUFFICIENT_ACCESS_TO_SITE_FOLDER Microsoft.Web.Deployment.DeploymentDetailedUnauthorizedAccessException: Unable to perform the operation ("Create Directory") for the specified directory ("\someserver.mydomain.local\sharename\sitename\applicationName"). This can occur if the server administrator has not authorized this operation for the user credentials you are using. Learn more at: http://go.microsoft.com/fwlink/?LinkId=221672#ERROR_INSUFFICIENT_ACCESS_TO_SITE_FOLDER. --- Microsoft.Web.Deployment.DeploymentException: The error code was 0x80070005. --- System.UnauthorizedAccessException: Access to the path '\someserver.mydomain.local\sharename\sitename\applicationName' is denied. at Microsoft.Web.Deployment.NativeMethods.RaiseIOExceptionFromErrorCode(Win32ErrorCode errorCode, String maybeFullPath) at Microsoft.Web.Deployment.DirectoryEx.CreateDirectory(String path) at Microsoft.Web.Deployment.DirPathProviderBase.CreateDirectory(String fullPath, DeploymentObject source) at Microsoft.Web.Deployment.DirPathProviderBase.Add(DeploymentObject source, Boolean whatIf) --- End of inner exception stack trace --- --- End of inner exception stack trace --- at Microsoft.Web.Deployment.FilePathProviderBase.HandleKnownRetryableExceptions(DeploymentBaseContext baseContext, Int32[] errorsToIgnore, Exception e, String path, String operation) at Microsoft.Web.Deployment.DirPathProviderBase.Add(DeploymentObject source, Boolean whatIf) at Microsoft.Web.Deployment.DeploymentObject.Add(DeploymentObject source, DeploymentSyncContext syncContext) at Microsoft.Web.Deployment.DeploymentSyncContext.HandleAdd(DeploymentObject destObject, DeploymentObject sourceObject) at Microsoft.Web.Deployment.DeploymentSyncContext.HandleUpdate(DeploymentObject destObject, DeploymentObject sourceObject) at Microsoft.Web.Deployment.DeploymentSyncContext.SyncChildrenNoOrder(DeploymentObject dest, DeploymentObject source) at Microsoft.Web.Deployment.DeploymentSyncContext.SyncChildrenNoOrder(DeploymentObject dest, DeploymentObject source) at Microsoft.Web.Deployment.DeploymentSyncContext.SyncChildrenOrder(DeploymentObject dest, DeploymentObject source) at Microsoft.Web.Deployment.DeploymentSyncContext.ProcessSync(DeploymentObject destinationObject, DeploymentObject sourceObject) at Microsoft.Web.Deployment.DeploymentObject.SyncToInternal(DeploymentObject destObject, DeploymentSyncOptions syncOptions, PayloadTable payloadTable, ContentRootTable contentRootTable, Nullable1 syncPassId) at Microsoft.Web.Deployment.DeploymentAgent.HandleSync(DeploymentAgentAsyncData asyncData, Nullable1 passId) at Microsoft.Web.Deployment.DeploymentAgent.HandleRequestWorker(DeploymentAgentAsyncData asyncData) at Microsoft.Web.Deployment.DeploymentAgent.HandleRequest(DeploymentAgentAsyncData asyncData) This is shown as the following on the console of the machine where I run the deployment: C:\Users\PLaComb"C:\Program Files (x86)\IIS\Microsoft Web Deploy V3\msdeploy.exe" -source:package='C:\Packages\Deployments\applicationName.zip' -dest:auto,computerName='https://SERVERNAME:8172/msdeploy.axd',includeAcls='True' -verb:sync -disableLink:AppPoolExtension -disableLink:ContentExtension -disableLink:CertificateExtension -setParamFile:"C:\Packages\Deployments\applicationName.SetParameters.xml" -allowUntrusted Info: Using ID 'c060c823-cdb4-4abe-8294-5ffbdc327d2e' for connections to the remote server. Info: Adding sitemanifest (sitemanifest). Info: Adding virtual path (JMS/admin) Info: Adding directory (JMS/admin). Error Code: ERROR_INSUFFICIENT_ACCESS_TO_SITE_FOLDER More Information: Unable to perform the operation ("Create Directory") for the specified directory ("\someserver.mydomain.local\sharename\sitename\applicationName"). This can occur if the server administrator has not authorized this operation for the user credentials you are using. Learn more at: http://go.microsoft.com/fwlink/?LinkId=221672#ERROR_INSUFFICIENT_ACCESS_TO_SITE_FOLDER. Error: The error code was 0x80070005. Error: Access to the path '\someserver.mydomain.local\sharename\sitename\applicationName' is denied. Error count: 1.

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  • Matlab Simulink version control with multiple developers

    - by Jon Mills
    We're using Matlab Simulink for model development (and Real-Time Workshop autocoding) within a team of several developers. We currently use Visual Source Safe (yes, I know its terrible) for version control, using locks to prevent conflicting changes. We'd like to migrate our programme to a different version control system (svn, hg or git), but we're concerned about performing merges and diffs on Simulink .mdl files. Does anybody have useful experience in performing merges on Simulink files?

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  • Running multiprocess applications from MATLAB

    - by Jacob
    I've written a multitprocess application in VC++ and tried to execute it with command line arguments with the system command. It runs, but only on one core --- any suggestions? Update:In fact, it doesn't even see the second core. I used OpenMP and used omp_get_max_threads() and omp_get_thread_num() to check and omp_get_max_threads() seems to be 1 when I execute the application from MATLAB but it's 2 (as is expected) if I run it from the command window.

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  • MATLAB Mex files

    - by hkf
    Is there a way to get the mex file for a built-in MATLAB m- file? If yes, how? If no, does that mean I have to write the C code myself (oh nooo!!!)

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  • MATLAB date selection popup calendar for gui

    - by Doresoom
    Does anyone know of a method to display a popup date selection calendar in a MATLAB gui? I know the financial toolbox has a uicalendar function, but unfortunately I don't have that toolbox. I have a hunch I'm going to have to use some Java or some other language for this one, which I know nothing about. I'm looking for something similar to this: which would return a date string after the user selects the date.

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  • matlab's phi symbol

    - by ldigas
    Not that significant, but annoying to no end. Why does matlab has no small phi (\varphi) symbol ? It has pretty much all other symbols LaTeX offers, but not this one. Why ? I may be wrong of course, in which case would be delighted if someone could prove me wrong...

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  • problem with sortrows MATLAB

    - by Jessy
    Hi, My question is related with the previous solved question in http://stackoverflow.com/questions/2925623/how-to-save-data-in-txt-file-in-matlab my problem is that, I decided to unsorted the output, however this error comes out when I removed the sortrows. And no error when I leave the sortrows I'm curious why.

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  • Matlab: Print text in input field

    - by Adam Doyle
    Using Matlab, I have this code: value = input('>> Enter a value: '); and basically, I want a "default" value to the right of the colon (sortof like this) >> Enter a value: 12 where "12" is editable such that the user could [backspace] [backspace] and change the value to, say, "20" or something. Is there any (easy) way to do this? Thanks!

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