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• Calling Grep inside Java gives incorrect results while calling grep in shell gives correct results.

  - by futureelite7

  I've got a problem where calling grep from inside java gives incorrect results, as compared to the results from calling grep on the same file in the shell. My grep command (called both in Java and in bash. I escaped the slash in Java accordingly): /bin/grep -vP --regexp='^[0-9]+\t.*' /usr/local/apache-tomcat-6.0.18/work/Catalina/localhost/saccitic/237482319867147879_1271411421 Java Code: String filepath = "/path/to/file"; String options = "P"; String grepparams = "^[0-9]+\\t.*"; String greppath = "/bin/"; String[] localeArray = new String[] { "LANG=", "LC_COLLATE=C", "LC_CTYPE=UTF-8", "LC_MESSAGES=C", "LC_MONETARY=C", "LC_NUMERIC=C", "LC_TIME=C", "LC_ALL=" }; options = "v"+options; //Assign optional params if (options.contains("P")) { grepparams = "\'"+grepparams+"\'"; //Quote the regex expression if -P flag is used } else { options = "E"+options; //equivalent to calling egrep } proc = sysRuntime.exec(greppath+"/grep -"+options+" --regexp="+grepparams+" "+filepath, localeArray); System.out.println(greppath+"/grep -"+options+" --regexp="+grepparams+" "+filepath); inStream = proc.getInputStream(); The command is supposed to match and discard strings like these: 85295371616 Hi Mr Lee, please be informed that... My input file is this: 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 8~!95371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 852&^*&1616 Hi Mr Lee, please be informed that... 8529537Ax16 Hi Mr Lee, please be informed that... 85====ppq16 Hi Mr Lee, please be informed that... 85291234783 a3283784428349247233834728482984723333 85219299222 The commands works when I call it from inside bash (Results below): 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 8~!95371616 Hi Mr Lee, please be informed that... 852&^*&1616 Hi Mr Lee, please be informed that... 8529537Ax16 Hi Mr Lee, please be informed that... 85====ppq16 Hi Mr Lee, please be informed that... 85219299222 However, when I call grep again inside java, I get the entire file (Results below): 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85aaa234567 Hi Ms Chan, please be informed that... 85292vx5678 Hi Mrs Ng, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 8~!95371616 Hi Mr Lee, please be informed that... 85295371616 Hi Mr Lee, please be informed that... 852&^*&1616 Hi Mr Lee, please be informed that... 8529537Ax16 Hi Mr Lee, please be informed that... 85====ppq16 Hi Mr Lee, please be informed that... 85291234783 a3283784428349247233834728482984723333 85219299222 What could be the problem that will cause the grep called by Java to return incorrect results? I tried passing local information via the environment string array in runtime.exec, but nothing seems to change. Am I passing in the locale information incorrectly, or is the problem something else entirely?

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• Metro: Promises

  - by Stephen.Walther

  The goal of this blog entry is to describe the Promise class in the WinJS library. You can use promises whenever you need to perform an asynchronous operation such as retrieving data from a remote website or a file from the file system. Promises are used extensively in the WinJS library. Asynchronous Programming Some code executes immediately, some code requires time to complete or might never complete at all. For example, retrieving the value of a local variable is an immediate operation. Retrieving data from a remote website takes longer or might not complete at all. When an operation might take a long time to complete, you should write your code so that it executes asynchronously. Instead of waiting for an operation to complete, you should start the operation and then do something else until you receive a signal that the operation is complete. An analogy. Some telephone customer service lines require you to wait on hold – listening to really bad music – until a customer service representative is available. This is synchronous programming and very wasteful of your time. Some newer customer service lines enable you to enter your telephone number so the customer service representative can call you back when a customer representative becomes available. This approach is much less wasteful of your time because you can do useful things while waiting for the callback. There are several patterns that you can use to write code which executes asynchronously. The most popular pattern in JavaScript is the callback pattern. When you call a function which might take a long time to return a result, you pass a callback function to the function. For example, the following code (which uses jQuery) includes a function named getFlickrPhotos which returns photos from the Flickr website which match a set of tags (such as “dog” and “funny”): function getFlickrPhotos(tags, callback) { $.getJSON( "http://api.flickr.com/services/feeds/photos_public.gne?jsoncallback=?", { tags: tags, tagmode: "all", format: "json" }, function (data) { if (callback) { callback(data.items); } } ); } getFlickrPhotos("funny, dogs", function(data) { $.each(data, function(index, item) { console.log(item); }); }); The getFlickr() function includes a callback parameter. When you call the getFlickr() function, you pass a function to the callback parameter which gets executed when the getFlicker() function finishes retrieving the list of photos from the Flickr web service. In the code above, the callback function simply iterates through the results and writes each result to the console. Using callbacks is a natural way to perform asynchronous programming with JavaScript. Instead of waiting for an operation to complete, sitting there and listening to really bad music, you can get a callback when the operation is complete. Using Promises The CommonJS website defines a promise like this (http://wiki.commonjs.org/wiki/Promises): “Promises provide a well-defined interface for interacting with an object that represents the result of an action that is performed asynchronously, and may or may not be finished at any given point in time. By utilizing a standard interface, different components can return promises for asynchronous actions and consumers can utilize the promises in a predictable manner.” A promise provides a standard pattern for specifying callbacks. In the WinJS library, when you create a promise, you can specify three callbacks: a complete callback, a failure callback, and a progress callback. Promises are used extensively in the WinJS library. The methods in the animation library, the control library, and the binding library all use promises. For example, the xhr() method included in the WinJS base library returns a promise. The xhr() method wraps calls to the standard XmlHttpRequest object in a promise. The following code illustrates how you can use the xhr() method to perform an Ajax request which retrieves a file named Photos.txt: var options = { url: "/data/photos.txt" }; WinJS.xhr(options).then( function (xmlHttpRequest) { console.log("success"); var data = JSON.parse(xmlHttpRequest.responseText); console.log(data); }, function(xmlHttpRequest) { console.log("fail"); }, function(xmlHttpRequest) { console.log("progress"); } ) The WinJS.xhr() method returns a promise. The Promise class includes a then() method which accepts three callback functions: a complete callback, an error callback, and a progress callback: Promise.then(completeCallback, errorCallback, progressCallback) In the code above, three anonymous functions are passed to the then() method. The three callbacks simply write a message to the JavaScript Console. The complete callback also dumps all of the data retrieved from the photos.txt file. Creating Promises You can create your own promises by creating a new instance of the Promise class. The constructor for the Promise class requires a function which accepts three parameters: a complete, error, and progress function parameter. For example, the code below illustrates how you can create a method named wait10Seconds() which returns a promise. The progress function is called every second and the complete function is not called until 10 seconds have passed: (function () { "use strict"; var app = WinJS.Application; function wait10Seconds() { return new WinJS.Promise(function (complete, error, progress) { var seconds = 0; var intervalId = window.setInterval(function () { seconds++; progress(seconds); if (seconds > 9) { window.clearInterval(intervalId); complete(); } }, 1000); }); } app.onactivated = function (eventObject) { if (eventObject.detail.kind === Windows.ApplicationModel.Activation.ActivationKind.launch) { wait10Seconds().then( function () { console.log("complete") }, function () { console.log("error") }, function (seconds) { console.log("progress:" + seconds) } ); } } app.start(); })(); All of the work happens in the constructor function for the promise. The window.setInterval() method is used to execute code every second. Every second, the progress() callback method is called. If more than 10 seconds have passed then the complete() callback method is called and the clearInterval() method is called. When you execute the code above, you can see the output in the Visual Studio JavaScript Console. Creating a Timeout Promise In the previous section, we created a custom Promise which uses the window.setInterval() method to complete the promise after 10 seconds. We really did not need to create a custom promise because the Promise class already includes a static method for returning promises which complete after a certain interval. The code below illustrates how you can use the timeout() method. The timeout() method returns a promise which completes after a certain number of milliseconds. WinJS.Promise.timeout(3000).then( function(){console.log("complete")}, function(){console.log("error")}, function(){console.log("progress")} ); In the code above, the Promise completes after 3 seconds (3000 milliseconds). The Promise returned by the timeout() method does not support progress events. Therefore, the only message written to the console is the message “complete” after 10 seconds. Canceling Promises Some promises, but not all, support cancellation. When you cancel a promise, the promise’s error callback is executed. For example, the following code uses the WinJS.xhr() method to perform an Ajax request. However, immediately after the Ajax request is made, the request is cancelled. // Specify Ajax request options var options = { url: "/data/photos.txt" }; // Make the Ajax request var request = WinJS.xhr(options).then( function (xmlHttpRequest) { console.log("success"); }, function (xmlHttpRequest) { console.log("fail"); }, function (xmlHttpRequest) { console.log("progress"); } ); // Cancel the Ajax request request.cancel(); When you run the code above, the message “fail” is written to the Visual Studio JavaScript Console. Composing Promises You can build promises out of other promises. In other words, you can compose promises. There are two static methods of the Promise class which you can use to compose promises: the join() method and the any() method. When you join promises, a promise is complete when all of the joined promises are complete. When you use the any() method, a promise is complete when any of the promises complete. The following code illustrates how to use the join() method. A new promise is created out of two timeout promises. The new promise does not complete until both of the timeout promises complete: WinJS.Promise.join([WinJS.Promise.timeout(1000), WinJS.Promise.timeout(5000)]) .then(function () { console.log("complete"); }); The message “complete” will not be written to the JavaScript Console until both promises passed to the join() method completes. The message won’t be written for 5 seconds (5,000 milliseconds). The any() method completes when any promise passed to the any() method completes: WinJS.Promise.any([WinJS.Promise.timeout(1000), WinJS.Promise.timeout(5000)]) .then(function () { console.log("complete"); }); The code above writes the message “complete” to the JavaScript Console after 1 second (1,000 milliseconds). The message is written to the JavaScript console immediately after the first promise completes and before the second promise completes. Summary The goal of this blog entry was to describe WinJS promises. First, we discussed how promises enable you to easily write code which performs asynchronous actions. You learned how to use a promise when performing an Ajax request. Next, we discussed how you can create your own promises. You learned how to create a new promise by creating a constructor function with complete, error, and progress parameters. Finally, you learned about several advanced methods of promises. You learned how to use the timeout() method to create promises which complete after an interval of time. You also learned how to cancel promises and compose promises from other promises.

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• How can I design my classes to include calendar events stored in a database?

  - by Gianluca78

  I'm developing a web calendar in php (using Symfony2) inspired by iCal for a project of mine. At this moment, I have two classes: a class "Calendar" and a class "CalendarCell". Here you are the two classes properties and method declarations. class Calendar { private $month; private $monthName; private $year; private $calendarCellList = array(); private $translator; public function __construct($month, $year, $translator) {} public function getCalendarCellList() {} public function getMonth() {} public function getMonthName() {} public function getNextMonth() {} public function getNextYear() {} public function getPreviousMonth() {} public function getPreviousYear() {} public function getYear() {} private function calculateDaysPreviousMonth() {} private function calculateNumericDayOfTheFirstDayOfTheWeek() {} private function isCurrentDay(\DateTime $dateTime) {} private function isDifferentMonth(\DateTime $dateTime) {} } class CalendarCell { private $day; private $month; private $dayNameAbbreviation; private $numericDayOfTheWeek; private $isCurrentDay; private $isDifferentMonth; private $translator; public function __construct(array $parameters) {} public function getDay() {} public function getMonth() {} public function getDayNameAbbreviation() {} public function isCurrentDay() {} public function isDifferentMonth() {} } Each calendar day can includes many calendar events (such as appointments or schedules) stored in a database. My question is: which is the best way to manage these calendar events in my classes? I think to add a eventList property in CalendarCell and populate it with an array of CalendarEvent objects fetched by the database. This kind of solution doesn't allow other coders to reuse the classes without db (because I should inject at least a repository services also) just to create and visualize a calendar... so maybe it could be better to extend CalendarCell (for instance in CalendarCellEvent) and add the database features? I feel like I'm missing some crucial design pattern! Any suggestion will be very appreciated!

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• How can I design my classes for a calendar based on database events?

  - by Gianluca78

  I'm developing a web calendar in php (using Symfony2) inspired by iCal for a project of mine. At this moment, I have two classes: a class "Calendar" and a class "CalendarCell". Here you are the two classes properties and method declarations. class Calendar { private $month; private $monthName; private $year; private $calendarCellList = array(); private $translator; public function __construct($month, $year, $translator) {} public function getCalendarCells() {} public function getMonth() {} public function getMonthName() {} public function getNextMonth() {} public function getNextYear() {} public function getPreviousMonth() {} public function getPreviousYear() {} public function getYear() {} private function calculateDaysPreviousMonth() {} private function calculateNumericDayOfTheFirstDayOfTheWeek() {} private function isCurrentDay(\DateTime $dateTime) {} private function isDifferentMonth(\DateTime $dateTime) {} } class CalendarCell { private $day; private $month; private $dayNameAbbreviation; private $numericDayOfTheWeek; private $isCurrentDay; private $isDifferentMonth; private $translator; public function __construct(array $parameters) {} public function getDay() {} public function getMonth() {} public function getDayNameAbbreviation() {} public function isCurrentDay() {} public function isDifferentMonth() {} } Each calendar day can includes many events stored in a database. My question is: which is the best way to manage these events in my classes? I think to add a eventList property in CalendarCell and populate it with an array of CalendarEvent objects fetched by the database. This kind of solution doesn't allow other coders to reuse the classes without db (because I should inject at least a repository services also) just to create and visualize a calendar... so maybe it could be better to extend CalendarCell (for instance in CalendarCellEvent) and add the database features? I feel like I'm missing some crucial design pattern! Any suggestion will be very appreciated!

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• What are those little useful ,customize/enhanced php functions that you wish you knew about 2 years

  - by I Like PHP

  Hello All, i like to work in php bcoz it's just amazing language. please share basic, useful, enhanced and customize function that make things better and easy in php and must be used in our all PHP project, i m sharing some of them please share your customize function that may be useful for everyone alternative/ enhanced print_r() and var_dump() function watch( $what ) { echo '<pre>'; if ( is_array( $what ) ) { print_r ( $what ); } else { var_dump ( $what ); } echo '</pre>'; } usage: 1. watch($_POST); // to see all post variable 2. watch($array); // to see any variable may b array, string or a variable enhanced mysql_escape_string() for multidimensional array to prevent sql injection function recursive_escape(&$value) { if (is_array($value)) array_map('recursive_escape', $value); else $value = mysql_escape_string($value); } usage array_map('recursive_escape', $_POST); ---------------------For encoding Get variables-------------------------------------- function nkode($k) { if ( is_array( $k ) ) return array_map("base64_encode",$k); else return base64_encode($k); } ---------------------for decoding varaibles from GET--------------------------------- function dkode($k) { if ( is_array( $k ) ) return array_map("base64_decode",$k); else return base64_decode($k); } Usage <a href="somelink.php?pid=<?php echo nkode($someid)?>"> and on next page(somelink.php) $findID=dkode($_GET[pid]); date convert to mm/dd/yyyy to yyyy-mm-dd( if we use date datatype in mysql) and also change into mm/dd/yyyy to disply on page function dateconvert($date,$func) { if ($func == 1){ //insert conversion list($month, $day, $year) = split('[/.-]', $date); $date = "$year-$month-$day"; return $date; } if ($func == 2){ //output conversion list($year, $month, $day) = split('[-.]', $date); $date = "$month/$day/$year"; return $date; } } usage $firstDate=dateconvert($_POST['firstdate'],1); // for insertion in database $showDate=dateconvert($fetch->date_field,2) // to display on browser to clean data before doing some action with that variable function cleanID($data) { $success=0; $data=trim($data); $data=strtolower($data); $data=strip_tags($data); return $data; } usage cleanID($_POST[username]); cleanID($_GET[pid]); please share any basic function that must be used , and please give me some suggestion to make above function more better Thanks

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• c++ : looking away to implemnt this senario

  - by user63898

  Hi im looking to find how to implement this scenario: i have logic code that is inside function, now i like to be able to execute this function in a separate thread. now what i have is a raw implementation of this .. i simple Init the Thread that in its Start/Run method i keep the function logic . how can i make it more generic ? so i could send the function ( mybe function pointer ) to generic thread factory/pool ? in c++

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• Algorithm for dynamic combinations

  - by sOltan

  My code has a list called INPUTS, that contains a dynamic number of lists, let's call them A, B, C, .. N. These lists contain a dynamic number of Events I would like to call a function with each combination of Events. To illustrate with an example: INPUTS: A(0,1,2), B(0,1), C(0,1,2,3) I need to call my function this many times for each combination (the input count is dynamic, in this example it is three parameter, but it can be more or less) function(A[0],B[0],C[0]) function(A[0],B[1],C[0]) function(A[0],B[0],C[1]) function(A[0],B[1],C[1]) function(A[0],B[0],C[2]) function(A[0],B[1],C[2]) function(A[0],B[0],C[3]) function(A[0],B[1],C[3]) function(A[1],B[0],C[0]) function(A[1],B[1],C[0]) function(A[1],B[0],C[1]) function(A[1],B[1],C[1]) function(A[1],B[0],C[2]) function(A[1],B[1],C[2]) function(A[1],B[0],C[3]) function(A[1],B[1],C[3]) function(A[2],B[0],C[0]) function(A[2],B[1],C[0]) function(A[2],B[0],C[1]) function(A[2],B[1],C[1]) function(A[2],B[0],C[2]) function(A[2],B[1],C[2]) function(A[2],B[0],C[3]) function(A[2],B[1],C[3]) This is what I have thought of so far: My approach so far is to build a list of combinations. The element combination is itself a list of "index" to the input arrays A, B and C. For our example: my list iCOMBINATIONS contains the following iCOMBO lists (0,0,0) (0,1,0) (0,0,1) (0,1,1) (0,0,2) (0,1,2) (0,0,3) (0,1,3) (1,0,0) (1,1,0) (1,0,1) (1,1,1) (1,0,2) (1,1,2) (1,0,3) (1,1,3) (2,0,0) (2,1,0) (2,0,1) (2,1,1) (2,0,2) (2,1,2) (2,0,3) (2,1,3) Then I would do this: foreach( iCOMBO in iCOMBINATIONS) { foreach ( P in INPUTS ) { COMBO.Clear() foreach ( i in iCOMBO ) { COMBO.Add( P[ iCOMBO[i] ] ) } function( COMBO ) --- (instead of passing the events separately) } } But I need to find a way to build the list iCOMBINATIONS for any given number of INPUTS and their events. Any ideas? Is there actually a better algorithm than this? any pseudo code to help me with will be great. C# (or VB) Thank You

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• How to resolve symbolic links in a shell script

  - by Greg Hewgill

  Given an absolute or relative path (in a Unix-like system), I would like to determine the full path of the target after resolving any intermediate symlinks. Bonus points for also resolving ~username notation at the same time. If the target is a directory, it might be possible to chdir() into the directory and then call getcwd(), but I really want to do this from a shell script rather than writing a C helper. Unfortunately, shells have a tendency to try to hide the existence of symlinks from the user (this is bash on OS X): $ ls -ld foo bar drwxr-xr-x 2 greg greg 68 Aug 11 22:36 bar lrwxr-xr-x 1 greg greg 3 Aug 11 22:36 foo -> bar $ cd foo $ pwd /Users/greg/tmp/foo $ What I want is a function resolve() such that when executed from the tmp directory in the above example, resolve("foo") == "/Users/greg/tmp/bar".

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• Processing a tab delimited file with shell script processing

  - by Lilly Tooner

  Hello, normally I would use Python/Perl for this procedure but I find myself (for political reasons) having to pull this off using a bash shell. I have a large tab delimited file that contains six columns and the second column is integers. I need to shell script a solution that would verify that the file indeed is six columns and that the second column is indeed integers. I am assuming that I would need to use sed/awk here somewhere. Problem is that I'm not that familiar with sed/awk. Any advice would be appreciated. Many thanks! Lilly

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• How do I reload .bashrc without logging out and back in?

  - by Jed Daniels

  Hello StackOverflowers, If I make changes to .bashrc, how do I reload it without logging out and back in? I'm embarrassed that I don't know the answer to this question, since I do a fair amount of bash scripting. I'm also couldn't decide if I should post this on ServerFault, but since I do more scripting than sysadmin, I chose StackOverflow; go ahead and move it if you (the community) feel that SF would have been a better choice. Thanks in advance. I'm sure once I hear the answer I'll be saying "doh! I knew that.", but it'll probably be good to have the answer here for other folks like me that should know (or do), but can't remember (I did search before asking, and couldn't find the answer, sorry if this is a repost). --jed

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• Running lame from php

  - by gok

  I am trying to run lame from a php script. I have tried these, but no luck, I don't get anything returned! Any ideas? system('lame', $returnarr); system('lame --help', $returnarr); exec('lame', $returnarr); passthru('lame', $returnarr); even this one returns nothing: exec('which lame', $returnarr); I am on OSX and final deployment will be on Linux. Do you have better suggestions for an automated wav-mp3 conversion? From php, should I execute a bash script that executes Lame?

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• How to execute with /bin/false shell

  - by Amar

  I am trying to setup per-user fastcgi scripts that will run each on a different port and with a different user. Here is example of my script: #!/bin/bash BIND=127.0.0.1:9001 USER=user PHP_FCGI_CHILDREN=2 PHP_FCGI_MAX_REQUESTS=10000 etc... However, if I add user with /bin/false (which I want, since this is about to be something like shared hosting and I don't want users to have shell access), the script is run under 1001, 1002 'user' which, as my Google searches showed, might be a security hole. My question is: Is it possible to allow user(s) to execute shell scripts but disable them so they cannot log in via SSH?

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• How te execute with /bin/false shell

  - by Amar

  Hello I am trying to setup per-user fastcgi scripts that will run each on different port and with different user. Here is example of my script: #!/bin/bash BIND=127.0.0.1:9001 USER=user PHP_FCGI_CHILDREN=2 PHP_FCGI_MAX_REQUESTS=10000 etc... However, if I add user with /bin/false (which I want, since this is about to be something like shared hosting and I dont want users to have shell access), the script is run'd under 1001, 1002 'user' which, as I googled, might be security hole. My question is: Is it possible to allow user(s) execute shell scripts but disable them to log in via SSH ? Thank you

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• How can I copy files with names containing spaces and UNICODE, when using a shell script?

  - by LOlliffe

  I have a list of files that I'm trying to copy and move (using cp and mv) in a bash shell script. The problem that I'm running into, is that I can't get either command to recognize a huge number of files, seemingly because the filenames contain spaces and/or unicode characters. I couldn't find any switches to decode/re-encode these characters. Instead, for example, if I copy "file name.xml", I get "*.xml" and a script error that the file wasn't found for my result. Does anyone know settings or commands that will deal with these files?

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• Sed does not work in expect

  - by Sharjeel Sayed

  I made this bash one-liner which I use to list Weblogic instances running along with their full paths.This works well when I run it from the shell. /usr/ucb/ps auwwx | grep weblogic | tr ' ' '\n' | grep security.policy | grep domain | awk -F'=' '{print $2}' | sed 's/weblogic.policy//' | sed 's/security\///' | sort I tried to incorporate this in an expect script send "echo Weblogic Processes: ; /usr/ucb/ps auwwx | grep weblogic | tr ' ' '\n' | grep security.policy | grep domain | awk -F'=' '{print \$2}' | sed 's/weblogic.policy//' | sed 's/security\///' | sort ; echo ; echo\r" but I got this error sed: -e expression #1, char 13: unknown option to `s' Please help

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• AWK If/ElseConditional Problem

  - by neversaint

  I have a data that looks like this: foo foo scaffold_7 1 4845 6422 4845 bar bar scaffold_7 -1 14689 16310 16310 What I want to do is to process the above lines where I just want to print column 1,2,3, 7 and one more column after 7th. But with condition when printing column 7 onwards. Below is my awk script: awk '{ if ($4=="+") { {end=$6-$5}{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $7 "\t" end+$7} } else {end=$6-$5}{print $1 "\t" $2 "\t" $3 "\t" $4 "\t" $7-end "\t" $7} }' But why it doesn't achieve the desired result like this? foo foo scaffold_7 1 4845 6422 bar bar scaffold_7 -1 14689 16310 Note that the arithmetic (e.g. $7-end or end+$7) is a must. So we can't just swap column from input file. Furthermore this AWK will be inside a bash script.

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• Getting ID of an instance newly launched with ec2-api-tools

  - by Jonik

  I'm launching an EC2 instance, by invoking ec2-run-instances from simple a bash script, and want to perform further operations on that instance (e.g. associate elastic IP), for which I need the instance id. The command is something like ec2-run-instances ami-dd8ea5a9 -K pk.pem -C cert.pem --region eu-west-1 -t c1.medium -n 1, and its output: RESERVATION r-b6ea58c1 696664755663 default INSTANCE i-945af9e3 ami-dd8ea5b9 pending 0 c1.medium 2010-04-15T10:47:56+0000 eu-west-1a aki-b02a01c4 ari-39c2e94d In this example, i-945af9e3 is the id I'm after. So, I'd need a simple way to parse the id from what the command returns - how would you go about doing it? My AWK is a little rusty... Feel free to use any tool available on a typical Linux box. (If there's a way to get it directly using EC2-API-tools, all the better. But afaik there's no EC2 command to e.g. return the id of the most recently launched instance.)

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• Can I have a shell alias evaluate a history substitution command?

  - by Brandon

  I'm trying to write an alias for cd !!:1, which takes the 2nd word of the previous command, and changes to the directory of that name. For instance, if I type rails new_project cd !!:1 the second line will cd into the "new_project" directory. Since !!:1 is awkward to type (even though it's short, it requires three SHIFTed keys, on opposite sides of of the keyboard, and then an unSHIFTed version of the key that was typed twice SHIFTed), I want to just type something like cd- but since the !!:1 is evaluated on the command line, I (OBVIOUSLY) can't just do alias cd-=!!:1 or I'd be saving an alias that contained "new_project" hard-coded into it. So I tried alias cd-='!!:1' The problem with this is that the !!:1 is NEVER evaluated, and I get a message that no directory named !!:1 exists. How can I make an alias where the history substitution is evaluated AT THE TIME I ISSUE THE ALIAS COMMAND, not when I define the alias, and not never? (I've tried this in both bash and zsh, and get the same results in both.)

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• Converting FASTQ to FASTA with SED/AWK

  - by neversaint

  I have a data in that always comes in block of four in the following format (called FASTQ): @SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN +SRR018006.2016 GA2:6:1:20:650 length=36 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!+! @SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC +SRR018006.19405469 GA2:6:100:1793:611 length=36 7);;).;);;/;*.2>/@@7;@77<..;)58)5/>/ Is there a simple sed/awk/bash way to convert them into this format (called FASTA): >SRR018006.2016 GA2:6:1:20:650 length=36 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGN >SRR018006.19405469 GA2:6:100:1793:611 length=36 ACCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC In principle we want to extract the first two lines in each block-of-4 and replace @ with >.

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• ./configure : /bin/sh^M : bad interpreter

  - by Vineeth

  Hello there, I've been trying to install lpng142 on my fed 12 system. Seems like a problem to me. I get this error [root@localhost lpng142]# ./configure bash: ./configure: /bin/sh^M: bad interpreter: No such file or directory [root@localhost lpng142]# How do I fix this? and for more details, I shall include the /etc/fstub file details here # # /etc/fstab # Created by anaconda on Wed May 26 18:12:05 2010 # # Accessible filesystems, by reference, are maintained under '/dev/disk' # See man pages fstab(5), findfs(8), mount(8) and/or blkid(8) for more info # /dev/mapper/VolGroup-lv_root / ext4 defaults 1 1 UUID=ce67cf79-22c3-45d4-8374-bd0075617cc8 /boot ext4 defaults 1 2 /dev/mapper/VolGroup-lv_swap swap swap defaults 0 0 tmpfs /dev/shm tmpfs defaults 0 0 devpts /dev/pts devpts gid=5,mode=620 0 0 sysfs /sys sysfs defaults 0 0 proc /proc proc defaults 0 0 [root@localhost etc]# Help, please

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• linux user login/logout log for computer restriction

  - by Cedric

  Hi ! I would like to know how to log the login and logout of a user. I know it's possible to use the command "last". But this command is based on a file that has a r/w permission for the user, hence the possibility to change these data. I would like to log these data over two months. Why would I like to do that ? In fact, I would like to prevent a normal user to use a computer more than an hour a day - except week-ends, and 10 hours in total a week. Cedric System used : kubuntu, Programming language : bash script

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• IF statement error in tcsh

  - by kaustav datta

  Having trouble executing an IF statement through tcsh. This works FINE for me - #!/bin/bash if echo `cal|tail -6|sed -e 's/^.\{3\}//' -e 's/.\{3\}$//' |tr -s '[:blank:]' '\n' | head -11|tail -10|tr -s '\n' ' '`|grep -w `date "+%e"` then echo "present" else echo "absent" fi This is the PROBLEM - #!/bin/tcsh if echo `cal|tail -6|sed -e 's/^.\{3\}//' -e 's/.\{3\}$//' |tr -s '[:blank:]' '\n' | head -11|tail -10|tr -s '\n' ' '`|grep -w `date "+%e"` then echo "present" else echo "absent" endif Getting this error- if: Expression Syntax. then: Command not found. I really need this to run using "tcsh"

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• nested if: too many arguments?

  - by FLX

  For some reason this code creates problems: source="/foo/bar/" destination="/home/oni/" if [ -d $source ]; then echo "Source directory exists" if [ -d $destination ]; then echo "Destination directory exists" rsync -raz --delete --ignore-existing --ignore-times --size-only --stats --progress $source $destination chmod -R 0755 $destination else echo "Destination directory does not exists" fi else echo "Source directory does not exists" fi It errors out with: Source directory exists /usr/bin/copyfoo: line 7: [: too many arguments Destination directory does not exists I used nested if statements in bash before without a problem, what simple mistake am I overlooking? Thanks!

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• Smart auto-completition for staged git file names, used with difftool

  - by piobyz

  I'd like to have a smart auto-completition of currently staged file names when using git diff. Example: modified: DIR1/LongCamelCaseFileName.h modified: DIR1/AnotherLongCamelCaseFileName.m modified: DIR1/AndThereAreALotOfThemInDir1.m modified: DIR2/file4.m and here, using bash tab-auto-complete functionality I'd like to use it with git diff where by smart I mean that after typing git diff I'd need to type only a short part of the staged file name that I want to diff, and without a dirname, so for example git diff And<TAB> would result in git diff AndThereAreALotOfThemInDir1.m Actually, without a dir-ommiting-part it would be still useful (auto-completing using only staged files pool).

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• How do i use RVM w/ Hudson CI server on Debian?

  - by JoshReedSchramm

  I'm trying to setup an automated "build" server for my rails projects using Hudson CI. SO far it's able to run specs and do metrics on the code but I have 2 different projects dependent on 2 different versions of ruby. So i'm trying to use RVM to run multiple copies of ruby then switch back and forth in a pre-build step. I found a couple posts like this one that try and explain how to make this work, but I'm not running a startup script for hudson, it starts on boot which is how it worked out of the box when i installed it via the debian instructions. The problem seems to be that even though hudson runs under the "hudson" account and that account has rvm installed (and working) when it tries to run a shell based prebuild step to call rvm switch 1.8.7 it fails with the error "rvm: command not found" Not sure what I'm doing wrong. Hudson is using SH as its shell but i also tried using bash. no luck. Has anyone gotten this working before in this setup?

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