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• Linux server is only using 60% of memory, then swapping

  - by Kamil Kisiel

  I've got a Linux server that's running our bacula backup system. The machine is grinding like mad because it's going heavy in to swap. The problem is, it's only using 60% of its physical memory! Here's the output from free -m: free -m total used free shared buffers cached Mem: 3949 2356 1593 0 0 1 -/+ buffers/cache: 2354 1595 Swap: 7629 1804 5824 and some sample output from vmstat 1: procs -----------memory---------- ---swap-- -----io---- -system-- -----cpu------ r b swpd free buff cache si so bi bo in cs us sy id wa st 0 2 1843536 1634512 0 4188 54 13 2524 666 2 1 1 1 89 9 0 1 11 1845916 1640724 0 388 2700 4816 221880 4879 14409 170721 4 3 63 30 0 0 9 1846096 1643952 0 0 4956 756 174832 804 12357 159306 3 4 63 30 0 0 11 1846104 1643532 0 0 4916 540 174320 580 10609 139960 3 4 64 29 0 0 4 1846084 1640272 0 2336 4080 524 140408 548 9331 118287 3 4 63 30 0 0 8 1846104 1642096 0 1488 2940 432 102516 457 7023 82230 2 4 65 29 0 0 5 1846104 1642268 0 1276 3704 452 126520 452 9494 119612 3 5 65 27 0 3 12 1846104 1641528 0 328 6092 608 187776 636 8269 113059 4 3 64 29 0 2 2 1846084 1640960 0 724 5948 0 111480 0 7751 116370 4 4 63 29 0 0 4 1846100 1641484 0 404 4144 1476 125760 1500 10668 105358 2 3 71 25 0 0 13 1846104 1641932 0 0 5872 828 153808 840 10518 128447 3 4 70 22 0 0 8 1846096 1639172 0 3164 3556 556 74884 580 5082 65362 2 2 73 23 0 1 4 1846080 1638676 0 396 4512 28 50928 44 2672 38277 2 2 80 16 0 0 3 1846080 1628808 0 7132 2636 0 28004 8 1358 14090 0 1 78 20 0 0 2 1844728 1618552 0 11140 7680 0 12740 8 763 2245 0 0 82 18 0 0 2 1837764 1532056 0 101504 2952 0 95644 24 802 3817 0 1 87 12 0 0 11 1842092 1633324 0 4416 1748 10900 143144 11024 6279 134442 3 3 70 24 0 2 6 1846104 1642756 0 0 4768 468 78752 468 4672 60141 2 2 76 20 0 1 12 1846104 1640792 0 236 4752 440 140712 464 7614 99593 3 5 58 34 0 0 3 1846084 1630368 0 6316 5104 0 20336 0 1703 22424 1 1 72 26 0 2 17 1846104 1638332 0 3168 4080 1720 211960 1744 11977 155886 3 4 65 28 0 1 10 1846104 1640800 0 132 4488 556 126016 584 8016 106368 3 4 63 29 0 0 14 1846104 1639740 0 2248 3436 428 114188 452 7030 92418 3 3 59 35 0 1 6 1846096 1639504 0 1932 5500 436 141412 460 8261 112210 4 4 63 29 0 0 10 1846104 1640164 0 3052 4028 448 147684 472 7366 109554 4 4 61 30 0 0 10 1846100 1641040 0 2332 4952 632 147452 664 8767 118384 3 4 63 30 0 4 8 1846084 1641092 0 664 4948 276 152264 292 6448 98813 5 5 62 28 0 Furthermore, the output of top sorted by CPU time seems to support the theory that swap is what's bogging down the system: top - 09:05:32 up 37 days, 23:24, 1 user, load average: 9.75, 8.24, 7.12 Tasks: 173 total, 1 running, 172 sleeping, 0 stopped, 0 zombie Cpu(s): 1.6%us, 1.4%sy, 0.0%ni, 76.1%id, 20.6%wa, 0.1%hi, 0.2%si, 0.0%st Mem: 4044632k total, 2405628k used, 1639004k free, 0k buffers Swap: 7812492k total, 1851852k used, 5960640k free, 436k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ TIME COMMAND 4174 root 17 0 63156 176 56 S 8 0.0 2138:52 35,38 bacula-fd 4185 root 17 0 63352 284 104 S 6 0.0 1709:25 28,29 bacula-sd 240 root 15 0 0 0 0 D 3 0.0 831:55.19 831:55 kswapd0 2852 root 10 -5 0 0 0 S 1 0.0 126:35.59 126:35 xfsbufd 2849 root 10 -5 0 0 0 S 0 0.0 119:50.94 119:50 xfsbufd 1364 root 10 -5 0 0 0 S 0 0.0 117:05.39 117:05 xfsbufd 21 root 10 -5 0 0 0 S 1 0.0 48:03.44 48:03 events/3 6940 postgres 16 0 43596 8 8 S 0 0.0 46:50.35 46:50 postmaster 1342 root 10 -5 0 0 0 S 0 0.0 23:14.34 23:14 xfsdatad/4 5415 root 17 0 1770m 108 48 S 0 0.0 15:03.74 15:03 bacula-dir 23 root 10 -5 0 0 0 S 0 0.0 13:09.71 13:09 events/5 5604 root 17 0 1216m 500 200 S 0 0.0 12:38.20 12:38 java 5552 root 16 0 1194m 580 248 S 0 0.0 11:58.00 11:58 java Here's the same sorted by virtual memory image size: top - 09:08:32 up 37 days, 23:27, 1 user, load average: 8.43, 8.26, 7.32 Tasks: 173 total, 1 running, 172 sleeping, 0 stopped, 0 zombie Cpu(s): 3.6%us, 3.4%sy, 0.0%ni, 62.2%id, 30.2%wa, 0.2%hi, 0.3%si, 0.0%st Mem: 4044632k total, 2404212k used, 1640420k free, 0k buffers Swap: 7812492k total, 1852548k used, 5959944k free, 100k cached PID USER PR NI VIRT RES SHR S %CPU %MEM TIME+ TIME COMMAND 5415 root 17 0 1770m 56 44 S 0 0.0 15:03.78 15:03 bacula-dir 5604 root 17 0 1216m 492 200 S 0 0.0 12:38.30 12:38 java 5552 root 16 0 1194m 476 200 S 0 0.0 11:58.20 11:58 java 4598 root 16 0 117m 44 44 S 0 0.0 0:13.37 0:13 eventmond 9614 gdm 16 0 93188 0 0 S 0 0.0 0:00.30 0:00 gdmgreeter 5527 root 17 0 78716 0 0 S 0 0.0 0:00.30 0:00 gdm 4185 root 17 0 63352 284 104 S 20 0.0 1709:52 28,29 bacula-sd 4174 root 17 0 63156 208 88 S 24 0.0 2139:25 35,39 bacula-fd 10849 postgres 18 0 54740 216 108 D 0 0.0 0:31.40 0:31 postmaster 6661 postgres 17 0 49432 0 0 S 0 0.0 0:03.50 0:03 postmaster 5507 root 15 0 47980 0 0 S 0 0.0 0:00.00 0:00 gdm 6940 postgres 16 0 43596 16 16 S 0 0.0 46:51.39 46:51 postmaster 5304 postgres 16 0 40580 132 88 S 0 0.0 6:21.79 6:21 postmaster 5301 postgres 17 0 40448 24 24 S 0 0.0 0:32.17 0:32 postmaster 11280 root 16 0 40288 28 28 S 0 0.0 0:00.11 0:00 sshd 5534 root 17 0 37580 0 0 S 0 0.0 0:56.18 0:56 X 30870 root 30 15 31668 28 28 S 0 0.0 1:13.38 1:13 snmpd 5305 postgres 17 0 30628 16 16 S 0 0.0 0:11.60 0:11 postmaster 27403 postfix 17 0 30248 0 0 S 0 0.0 0:02.76 0:02 qmgr 10815 postfix 15 0 30208 16 16 S 0 0.0 0:00.02 0:00 pickup 5306 postgres 16 0 29760 20 20 S 0 0.0 0:52.89 0:52 postmaster 5302 postgres 17 0 29628 64 32 S 0 0.0 1:00.64 1:00 postmaster I've tried tuning the swappiness kernel parameter to both high and low values, but nothing appears to change the behavior here. I'm at a loss to figure out what's going on. How can I find out what's causing this? Update: The system is a fully 64-bit system, so there should be no question of memory limitations due to 32-bit issues. Update2: As I mentioned in the original question, I've already tried tuning swappiness to all sorts of values, including 0. The result is always the same, with approximately 1.6 GB of memory remaining unused. Update3: Added top output to the above info.

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• mod_pagespeed using up too many resources?

  - by OC2PS

  I have found several threads from 2010 and early-2011 talking about excessive resource usage by mod_pagespeed I haven't seen any recent ones. I am facing excessive memory usage, which is causing server to crash several times a day. I am wondering if the issue was ever fixed before mod_pagespeed 1.0 was released. Also, request any tips and suggestion on how to fix the issue. My server configuration: 4 quad-core processors (likely oversold) 3GB memory Xen Centos 6 64-bit Apache cPanel PHP mySQL

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• Utilizing 5 physical servers in 1 cluster

  - by Vijay Gharge

  Hi, I have 5 physical servers with low end memory & cpu resources. I want to create 1 cluster using all these servers and want to run mysql db on the same such that mysql db would utilize 5 server's CPU power to execute db queries & same for memory. Could you please help me understanding how to achieve this? Regards,

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• Is it possible to run multiple mongod instances on a single set of database files

  - by 9point6

  We have large multi-gigabyte data sets on which we run very complex queries, for example { $or: [ { id: 30000001, ... }, { id: 30000005, ... }, ..., { id: 30001005, ... } ] } It seems that CPU is actually a bottleneck at this point, so I'd be advantageous to be able to run multiple mongod instances on the same set of database files. We've considered using replica sets to this end, but would prefer to not require the extra disk space simply for CPU reasons.

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• Why aren't we programming on the GPU???

  - by Chris

  So I finally took the time to learn CUDA and get it installed and configured on my computer and I have to say, I'm quite impressed! Here's how it does rendering the Mandelbrot set at 1280 x 678 pixels on my home PC with a Q6600 and a GeForce 8800GTS (max of 1000 iterations): Maxing out all 4 CPU cores with OpenMP: 2.23 fps Running the same algorithm on my GPU: 104.7 fps And here's how fast I got it to render the whole set at 8192 x 8192 with a max of 1000 iterations: Serial implemetation on my home PC: 81.2 seconds All 4 CPU cores on my home PC (OpenMP): 24.5 seconds 32 processors on my school's super computer (MPI with master-worker): 1.92 seconds My home GPU (CUDA): 0.310 seconds 4 GPUs on my school's super computer (CUDA with static domain decomposition): 0.0547 seconds So here's my question - if we can get such huge speedups by programming the GPU instead of the CPU, why is nobody doing it??? I can think of so many things we could speed up like this, and yet I don't know of many commercial apps that are actually doing it. Also, what kinds of other speedups have you seen by offloading your computations to the GPU?

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• Mpi function define

  - by Simone

  I wrote a program in c using MPI (Message Passing Inteface) that compute recursively the inverse of a lower triangular matrix. Every cpu sends 2 submatrices to other two cpus, they compute them and they give them back to the cpu caller. When the cpu caller has its submatrices it has to perform a matrix multiplication. In the recurrence equation the bottle neck is matrix multiplication. I implemented parallel multiplication with mpi in c but i'm not able to embed it into a function. Is it possible? thanks, Simone

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• How can I extract a value from comma separated values in Perl?

  - by Octopus

  I have a log file containing statistics from different servers. I am separating the statistics from this log file using regex only. I am trying to capture the CPU usage from the running process. For SunOS, I have below output: process,10050,user1,218,59,0,1271M,1260M,sleep,58.9H,0.02%,java Here the CPU % is at 11th field if we separate by commas (,). To get this value I am using below regex: regex => q/^process,(?:.*?),((?:\d+)\.(?:\d+))%,java$/, For the linux system I have below output: process,26190,user1,20,0,1236m,43m,6436,S,0.0,1.1,0:00.00,java, Here the CPU usage is at 10th column. What regex pattern should I use to get this value?

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• process thread scheduling

  - by arvind

  I have the following query regarding the scheduling of process threads. a) If my process A has 3 threads then can these threads be scheduled concurrently on the different CPUs in SMP m/c or they will be given time slice on the same cpu. b) Suppose I have two processes A with 3 threads and Process B with 2 threads (all threads are of same priority) then cpu time allocated to each thread (time slice) is dependent on the number of threads in the process or not? Correct me if I am wrong is it so that cpu time is allocated to process which is then shared among its threads i.e. time slice given to process A threads is less than that of Process B threads.

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• Horrible WPF performance!

  - by Erik

  Why am i using over 80% CPU when just hovering some links? As you can see in the video i uploaded: http://www.youtube.com/watch?v=3ALF9NquTRE the CPU goes to 80% CPU when i move my mouse over the links. My style for the items are as follows <Style x:Key="LinkStyle" TargetType="{x:Type Hyperlink}"> <Style.Triggers> <Trigger Property="IsMouseOver" Value="True"> <Setter Property="Foreground" Value="White" /> </Trigger> </Style.Triggers> <Setter Property="TextBlock.TextDecorations" Value="{x:Null}" /> <Setter Property="Foreground" Value="#FFDDDDDD"/> <Setter Property="Cursor" Value="Arrow" /> </Style> Why?

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• what perl regex should I use to get value from line

  - by Octopus

  I am trying to capture the cpu usage from the running process. For SunOS, I have below output process,10050,user1,218,59,0,1271M,1260M,sleep,58.9H,0.02%,java here the cpu % is at 11th field if we separate by comma(,). To get this value I am using below regex regex => q/^process,(?:.*?),((?:\d+)\.(?:\d+))%,java$/, but for the linux system I have below output. process,26190,user1,20,0,1236m,43m,6436,S,0.0,1.1,0:00.00,java, here the cpu usage is at 10th column What regex pattern should i use to get this value. Appreciate for any suggestion.

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• Python: how to enclose strings in a list with < and >

  - by Michael Konietzny

  Hello, i would like to enclose strings inside of list into < (formatted like <%s). The current code does the following: def create_worker (general_logger, general_config): arguments = ["worker_name", "worker_module", "worker_class"] __check_arguments(arguments) def __check_arguments(arguments): if len(sys.argv) < 2 + len(arguments): print "Usage: %s delete-project %s" % (__file__," ".join(arguments)) sys.exit(10) The current output looks like this: Usage: ...\handler_scripts.py delete-project worker_name worker_module worker_class and should look like this: Usage: ...\handler_scripts.py delete-project <worker_name> <worker_module> <worker_class> Is there any short way to do this ? Greetings, Michael

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• Optimizing for speed - 4 dimensional array lookup in C

  - by Tiago

  I have a fitness function that is scoring the values on an int array based on data that lies on a 4D array. The profiler says this function is using 80% of CPU time (it needs to be called several million times). I can't seem to optimize it further (if it's even possible). Here is the function: unsigned int lookup_array[26][26][26][26]; /* lookup_array is a global variable */ unsigned int get_i_score(unsigned int *input) { register unsigned int i, score = 0; for(i = len - 3; i--; ) score += lookup_array[input[i]][input[i + 1]][input[i + 2]][input[i + 3]]; return(score) } I've tried to flatten the array to a single dimension but there was no improvement in performance. This is running on an IA32 CPU. Any CPU specific optimizations are also helpful. Thanks

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• Java BufferedReader readline blocking?

  - by tgguy

  I want to make an HTTP request and then get the response as sketched here: URLConnection c = new URL("http://foo.com").openConnection(); c.setDoOutput(true); /* write an http request here using a new OutputStreamWriter(c.getOutputStream) */ BufferedReader reader = new BufferedReader(new InputStreamReader(c.getInputStream)); reader.readLine(); But my question is, if the request I send takes a long time before a response is received, what happens in the call reader.readLine() above? Will this process stay running/runnable on the CPU or will it get taken off the CPU and be notified to wake up and run again when there is IO to be read? If it stays on the CPU, what can be done to make it get off and be notified later?

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• Testing perceived performance

  - by Josh Kelley

  I recently got a shiny new development workstation. The only disadvantage of this is that the desktop apps I'm developing now run very, very fast, and so I fear that parts of the code that would be annoyingly slow on end users' machines will go unnoticed during my testing. Is there a good way to slow down an application for testing? I've tried searching around, but all of the results I've been able to find seem pretty fiddly to set up (e.g., manually setting up a high-priority CPU-bound task on the same CPU core as the target app, or running a background process that rapidly interrupts and resumes the target app), and I don't know if the end result is actually a good representation of running on a slower computer (with its slower CPU, slower RAM, slower disk I/O...). I don't think that this is a job for a profiler; I'm interested in the user's perception of end-to-end performance rather than in where the time goes for particular operations.

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• How to find out all versions of iPad from user-agent string?

  - by User11091981

  I wanted to find out all the version's of iPad (excluding iPhone, iPod) from user agent string, currently while testing I got the following string Mozilla/5.0 (iPad; CPU OS 5_1_1 like Mac OS X) AppleWebKit/534.46 (KHTML, like Gecko) Version/5.1 Mobile/9B206 Safari/7534.48.3 Question: Will the following code works fine for all the iPad's? String userAgentStr = request.getHeader("User-agent"); if (userAgentStr.contains("iPad")) { //do my logic } EDIT: I am using Dolphin browser from iPad but I am getting the following UA string: Mozilla/5.0 (iPhone; U; CPU iPhone OS 4_2_1 like Mac OS X; en_US) AppleWebKit/533.17.9 (KHTML, like Gecko) Mobile/8C148 Safari/6533.18.5 Similarly iBrowser from iPad UA string is: Mozilla/5.0 (iPhone; CPU iPhone OS 5_1_1 like Mac OS X) AppleWebKit/534.46 (KHTML, like Gecko) Mobile/9B206 So my above code is breaking...

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• ShellExecute not working from IDE but works otherwise.

  - by Altar

  I want to create and then open a txt file using the ShellExecute command. I have used this code for years with Delphi 7 and it worked: function Executa(CONST ExeName, Parameters: string): Boolean; begin if Parameters= '' then Result:= ShellExecute(0, 'open', PChar(ExeName), NIL , nil, SW_SHOWNORMAL)> 32 else Result:= ShellExecute(0, 'open', PChar(ExeName), PChar(Parameters), nil, SW_SHOWNORMAL)> 32; end; Now, I switch to Windows 7 (don't like it; they stuck it on my throat with my new laptop) 64 bit and the code is not working anymore when it runs from IDE. Delhi shows the CPU window with the caption "CPU-Process unknown (2352)". I close the CU windows and everything works fine until I close the application, when Delphi shows the CPU window one more time. If I run the app from outside IDE, it works fine. Looks like the debugger has something to say to me, but I don't know what.

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• AES acceleration for Java

  - by chris_l

  I want to encrypt/decrypt lots of small (2-10kB) pieces of data. The performance is ok for now: On a Core2Duo, I get about 90 MBytes/s AES256 (when using 2 threads). But I may need to improve that in the future - or at least reduce the impact on the CPU. Is it possible to use dedicated AES encryption hardware with Java (using JCE, or maybe a different API)? Would Java take advantage of special CPU features (SSE5?!), if I get a better CPU? Or are there faster JCE providers? (I tried SunJCE and BouncyCastle - no big difference.) Other possiblilities?

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• How to printf a time_t variable as a floating point number?

  - by soneangel

  Hi guys, I'm using a time_t variable in C (openMP enviroment) to keep cpu execution time...I define a float value sum_tot_time to sum time for all cpu's...I mean sum_tot_time is the sum of cpu's time_t values. The problem is that printing the value sum_tot_time it appear as an integer or long, by the way without its decimal part! I tried in these ways: to printf sum_tot_time as a double being a double value to printf sum_tot_time as float being a float value to printf sum_tot_time as double being a time_t value to printf sum_tot_time as float being a time_t value Please help me!!

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• Google App Engine - Is this just a fluke, or could changing the version of an app improve cold-start

  - by Spines

  Here is the situation: I had an app with a cold start time of about 4 seconds. I was trying to improve the cold start time by removing a bunch of libraries and code I didn't really need. After doing that the cold start time was about 3 seconds latency, and 3 seconds CPU time used. I changed the version number in appengine-web.xml, and nothing else. And now I have two versions of my app that have the exact same code, up and running. For cold starts, the newer version uses 1800ms to 1900ms in CPU time, and has 1800ms to 2300ms in latency. For cold starts, the older version uses 2800ms to 3000ms in CPU time, and has 2300ms to 3600ms in latency. So far I have sampled 4 cold starts for each version.

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• Is code clearness killing application performance?

  - by Jorge Córdoba

  As today's code is getting more complex by the minute, code needs to be designed to be maintainable - meaning easy to read, and easy to understand. That being said, I can't help but remember the programs that ran a couple of years ago such as Winamp or some games in which you needed a high performance program because your 486 100 Mhz wouldn't play mp3s with that beautiful mp3 player which consumed all of your CPU cycles. Now I run Media Player (or whatever), start playing an mp3 and it eats up a 25-30% of one of my four cores. Come on!! If a 486 can do it, how can the playback take up so much processor to do the same? I'm a developer myself, and I always used to advise: keep your code simple, don't prematurely optimize for performance. It seems that we've gone from "trying to get it to use the least amount of CPU as possible" to "if it doesn't take too much CPU is all right". So, do you think we are killing performance by ignoring optimizations?

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• How Two Programs Can Talk To Each Other In Java?

  - by Arnon

  My first time here... I want to ?reduce? the CPU usage/ROM usage/RAM usage - in general ?speaking?, all system resources that my App use - how doesn't? :) For this reason i want to split the preferences window from the rest of the application, and let the preferences window to run as ?independent? program. The preferences program ?should? write to a Property file(not a problem at all) and to send a "update signal" to the main program - which mean, to call the update method(that i wrote) that found in the Main class. How can i call the update method in the Main program from the preferences program? Or in the other hand... There is a way to build preferences window that take system resources just when it's appear? Is this approach - of separating programs and let them talk to each other(somehow) - is a right approach for speeding up my programs? tnx

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• What Use are Threads Outside of Parallel Problems on MultiCore Systesm?

  - by Robert S. Barnes

  Threads make the design, implementation and debugging of a program significantly more difficult. Yet many people seem to think that every task in a program that can be threaded should be threaded, even on a single core system. I can understand threading something like an MPEG2 decoder that's going to run on a multicore cpu ( which I've done ), but what can justify the significant development costs threading entails when you're talking about a single core system or even a multicore system if your task doesn't gain significant performance from a parallel implementation? Or more succinctly, what kinds of non-performance related problems justify threading? Edit Well I just ran across one instance that's not CPU limited but threads make a big difference: TCP, HTTP and the Multi-Threading Sweet Spot Multiple threads are pretty useful when trying to max out your bandwidth to another peer over a high latency network connection. Non-blocking I/O would use significantly less local CPU resources, but would be much more difficult to design and implement.

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• Not able to kill bad kernel running on NVIDIA GPU

  - by arvindkgs

  Hi, I am in a real fix. Please help. Its urgent. I have a host process that spawns multiple host(CPU) threads. These threads in turn call the CUDA kernel. These CUDA kernels are written by external users. So it might be bad kernels that enter infinite loop. In order to overcome this I have put a time-out of 2 mins that will kill the corresponding CPU thread. Will killing the CPU thread also kill the kernel running on the GPU? As far as what I have tested it does'nt. How can I also kill all the threads currently running in the GPU? Thanks, Arvind

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• malloc hangs in Linux

  - by Rahul

  I am using Linux on a 16 G with 2 quad core CPU. There are 8 processes which are doing some work (CPU intensive/network i/o). Out of which 4 have a memory leak (These are test conditions so no problem in having leaks here). Total space is occupied by all processes is around 15.4 G only 200 MB is free in system. Things are fine for some hours. But after that malloc hangs (for a process which doesn't have a memory leak). Its stuck for for more than 4 minutes (Note CPU is not 100% but io has gone up signficantly). Now there is no problem in the hanged process. (It has not corrupted the memory). What malloc is doing? (is it tryibg to defragment or builidng up swap space).I am using SUSE 10. Any pointers?

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• RegEx to Reject Unescaped Character

  - by JDV72

  I want to restrict usage of unescaped ampersands in a particular input field. I'm having trouble getting a RegEx to kill usage of "&" unless followed by "amp;"...or perhaps just restrict usage of "& " (note the space). I tried to adapt the answer in this thread, but to no avail. Thanks. (FWIW, here's a RegEx I made to ensure that a filename field didn't contain restrited chars. and ended in .mp3. It works fine, but does it look efficient?)

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