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• Which programming language could I use for Natural Language Processing to extract clinical words?

  - by MACEE

  I am going to do entity extraction (like Named Entity Recognition) from clinical free text (unstructured raw text such as discharge summaries) and these entities could be any medical problem, medical tests or treatments. I am going to use one of i2b2 datasets (https://www.i2b2.org/) if case you are familiar with that. I am new to the NLP(Natural Language Processing) field and I need a programming language to support NLP tasks and also easily connect to the available libraries of machine learning algorithms like CRF. I don't know much java and I heard about Python, Perl and Scala but I am not sure which one would be the best option for this task?

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• Upgrading from 11.10- to 12.04 Hangs at "mysql: restarting..."

  - by Mark

  I'm trying to upgrade from Ubuntu Server 11.10 to 12.04 using Update Manager. I figured out that I had to click the arrow next to 'Terminal' and select OK a couple times. Now it's supposed to be "Installing the upgrades" but it's frozen trying to restart mysql for the second time mysql: restarting.... Apache2, atd and cups were all restarted twice after "Restarting services possibly affected by the upgrade". It's been stuck here for nearly an hour. I read here about killing processes, but I can't get a terminal window to open. EDIT: I don't know if this matters but there are 6 occurrences in the Distrobution Upgrade window that say: debconf: unable to initialize frontend: Gnome debconf: (Unable to load Gtk -- is libgtk2-perl installed?) debconf: falling back to frontend: Dialog I should have left the server alone and never run apt-get install ubuntu-desktop yesterday. I would really appreciate any suggestions. Thanks, Mark

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• How can I initialize file names in the folders/ subfolders?

  - by user37991

  Sometimes Thunar allows 'camel-case' of file names, but only in the immediate folder, not the sub-folders. "Perl module to convert stringt to and from CamelCase" exists in Synaptic, but it is not powerful enough, or am I ignorant? The only way I can reliably do this is with Windows shareware (paid $$): Servant Salamander). That's why all my data & archives are on NTFS partitions. BTW: Synaptic has different entries for 'initialize' and 'initialise'. But I'll mention this in another question.

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• Automatically kill a process if it exceeds a given amount of RAM

  - by chrisamiller

  I work on large-scale datasets. When testing new software, a script will sometimes sneak up on me, quickly grab all available RAM, and render my desktop unusable. I'd like a way to set a RAM limit for a process so that if it exceeds that amount, it will be killed automatically. A language-specific solution probably won't work, as I use all sorts of different tools (R, Perl, Python, Bash, etc). So is there some sort of process-monitor that will let me set a threshold amount of RAM and automatically kill a process if it uses more?

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• Suggestions for Future or On-The-Edge Languages (2011)

  - by Kurtis

  I'm just looking for some suggestions on newer languages and language implementations that are useful for string manipulation. It's now 2011 and a lot has changed over the years. Most of my work includes web development (which is mostly text-based) and command line scripting. I'm pretty language agnostic, although I've felt violated using PHP over the years. My only requirements are that the language be good at text manipulation, without a lot of 3rd party libraries (core libraries are okay, though), and that the language and/or standard implementation is very up to date or even "futuristic". For example, the two main languages I'm looking at right now are Python (Version 3.x) or Perl (Version 6.x). Research, Academic, and Experimental languages are okay with me. I don't mind functional languages although I'd like to have the option of programming in a procedural or even object oriented manner. Thanks!

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• Is slower performance, of programming languages, really, a bad thing?

  - by Emanuil

  Here's how I see it. There's machine code and it's all that computers needs in order to run something. Computers don't care about programming languages. It doesn't matter to them whether the machine code comes from Perl, Python or PHP. Programming languages don't serve computers. They serve programmers. Some programming languages run slower than others but that's not necessarily because there is something wrong with them. In many cases, it's because they do more things that programmers would otherwise have to do (i.e. memory management) and by doing these things, they are better in what they are supposed to do - serve programmers. So, is slower performance, of programming languages, really, a bad thing?

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• One dimensional cutting algorithm with minimum waste

  - by jm666

  Can anybody point me to some resources about "cutting algorithm"? The problem: have rods with length of L meters, e.g. 6 m need cut smaller pieces of different lengths, e.g. need: 4 x 1.2m 8 x 0,9m etc... (many other lengths and counts) How to determine the optimal cutting, what will produce the minimum wasted material? I'm capable write an perl program, but haven't any idea about the algorithm. (if here is already some CPAN module what can help, would be nice). Alternatively, if someone can point me to some "spreadsheet" solution, or to anything what helps. Ps: in addition, need care about the "cutting line width" too, whats means than from the 6m long rod is impossible to cut 6 x 1m, because the cutting itself takes "3mm" width, so it is possible cut only 5 x 1m and the last piece will be only 98.5 cm (1m minus 5 x 3mm cut-width) ;(.

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• What's shell script's advantage over interpreted programming languages?

  - by Lai Yu-Hsuan

  (I'm not sure if it's a appropriate question here) Shell script, like bash, can do many things. It can call Unix programs, pipe their output, redirect I/O from/to files, control flow, check whether a file exists, etc. But a modern programming language, e.g, python and ruby, can also do these all. And their are (I think) more readable and maintainable. bash is worldwide spreaded. But many distributions have installed python interpreter, too. So what's the advantage of shell script? If I could write python, ruby or perl, is it worth to learn bash?

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• What web oriented language would work best with binary data?

  - by Qqwy

  I want to create a service where people can upload files. However, since file storage costs money, I want to compress the files so they take less space. I would want to write my own compression algorithm, however, PHP doesn't have good ways to handle binary data (which is needed for many compression algorithms). So I wondered, what would be a better language to create such a website in? I have knowledge of PHP (and Javascript, HTML and CSS) but no experience with other things like Ruby, Perl, Python, and other web development languages.

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• Make Apache encode or replace quotes instead of escaping them?

  - by mplungjan

  In the dcoumentation I read Format Notes For security reasons, starting with version 2.0.46, non-printable and other special characters in %r, %i and %o are escaped using \xhh sequences, where hh stands for the hexadecimal representation of the raw byte. Exceptions from this rule are " and \, which are escaped by prepending a backslash, and all whitespace characters, which are written in their C-style notation (\n, \t, etc). In versions prior to 2.0.46, no escaping was performed on these strings so you had to be quite careful when dealing with raw log files. This is a problem for Analog which is still the handiest analyser I use. I get .... "GET /somerequest?q=\"quoted string\"&someparm=bla" in the logfile and it is of course flagged as corrupt since Analog expects .... "GET /somerequest?q=%22quoted string%22&someparm=bla" or similar. I realise I can pre-process using something like perl -p -i.bak -e 's/\\"/%22/g' logfile But I'd rather not have to add this step to these files which are 50-90MB zipped per day Thanks for any pointers

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• Should I sacrifice code succintness to ensure the narrowest variable scope? [duplicate]

  - by David Scholefield

  This question already has an answer here: Is the usage of internal scope blocks within a function bad style? 3 answers In many languages (e.g. both Perl and Java - which are the two languages I work most with) it is possible to narrow the scope of local variables by declaring them within a block. Although it adds extra code length (the opening and closing block braces), and possibly reduces readability, should I create blocks purely to narrow the scope of variables to the statements that use the variables and to uphold the principle of narrowest scope or does this sacrifice succinctness and readability just to unnecessarily uphold an agreed 'best practice' principle? I usually declare local variables to functions/methods at the start of the function to aid readability, but I could not do this, and just create blocks throughout the function and declare the variables throughout the code - within those blocks - to narrow their scope.

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• Consultant in a firm that doesn't understand the tech!

  - by techsjs2012

  I got the job as a Consultant in a firm that has 3 other programmers. My job is to rewrite all the old system in Java, Spring etc but the staff programmers only know perl and the manager does not know any programming. I am trying to get them to understand that I have 6 projects to rewrite here but no one has design docs or spec. the staff programmers never had to write any documents. Plus I cant get the manager to understand the new java tech stuff.. he keeps asking some of the staff for views on things but the staff don't know it or understand it. Where do I go from here to make the manager understand that the staff programmers or someone has to write a design document so I know what to build. or if I have to write the documents how do I get the information?

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• Programming language specific package management systems

  - by m0nhawk

  There are some programming languages for which exist their own package management systems: CTAN for TeX CPAN for Perl Pip & Eggs for Python Maven for Java cabal for Haskell Gems for Ruby Is there any other languages with such systems? What about C and C++? (that's the main question!) Why there are no such systems for them? And isn't creating packages for yum, apt-get or other general package management systems better? UPD: And what about unification? Have someone tried to unify that "the zoo"? If yes, looks like that project didn't succeed.

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• Web Page Execution Internals

  - by octopusgrabbus

  My question is what is the subject area that covers web page execution/loading. I am looking to purchase a book by subject area that covers when things execute or load in a web page, whether it's straight html, html and Javascript, or a PHP page. Is that topic covered by a detailed html book, or should I expect to find information like that in a JavaScript of PHP book? I understand that PHP and Perl execute on the server and that Javascript is client side, and I know there is a lot of on-line documentation describing <html>, <head>, <body>, and so on. I'm just wondering what subject area a book would be in to cover all that, not a discussion of the best book or someone's favorite book, but the subject area.

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• Why are slower programming languages considered worse than faster ones?

  - by Emanuil

  Here's how I see it. There's machine code and it's all that the computers needs in order to run something. The computers don't care about programming languages. It doesn't matter to them if the machine code comes from Perl, Python or PHP. Programming languages exist to serve programmers. Some programming languages run slower then others but that's not because there is something wrong with them. It's often because they do more things that otherwise programmers would do and by doing these things, they do better what they are supposed to do - serve programmers. So why are slower programming languages considered worse than faster ones?

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• 302 Redirect Issue for Joomla 2.5.7 version site

  - by DDD

  For my site i am using Joomla 2.5.7 version and FB comments tools for the articles in the site. i am getting the 302 redirect problem for the FB comments for the Articles to which i post. I have checked the url's here http://www.webconfs.com/http-header-check.php and got the following result with 302 redirect. for http://www.fijoo.com HTTP/1.1 302 Moved Temporarily = Date = Wed, 21 Nov 2012 09:46:39 GMT Server = Apache/2.2.22 (Unix) mod_ssl/2.2.22 OpenSSL/1.0.0-fips mod_auth_passthrough/2.1 mod_bwlimited/1.4 FrontPage/5.0.2.2635 mod_perl/2.0.6 Perl/v5.10.1 X-Powered-By = PHP/5.3.16 Set-Cookie = =en-GB; expires=Wed, 21-Nov-2012 10:46:40 GMT LOCATION = / Content-Length = 0 Connection = close Content-Type = text/html How to overcome this anyone please help.

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• What are startups expecting when they ask you to solve a programming challenge before interviewing? [closed]

  - by Swapnil Tailor

  I have applied to couple of startups and most of them are asking to solve programming challenge before they start on the interviewing candidate. I have submitted couple of the solutions and all the time getting rejected in the initial screening. Now what I think is, they will see my coding style, algorithm and OOD concepts that I have used to solve the problem. Can you guys input more on it as what other details are taken into consideration and how can I improve my coding for getting selected. By the way, I did all my coding in either Java/Perl. EDIT I feel the biggest reason for rejection is code didn't work for couple of use cases.

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• Let apache run perlscripts that don't have an extension

  - by tiMbeRdroP

  I'd like to use perlscripts without their extension. f.e. "index" instead of "index.pl". Changing the DefaultType-directive from text/plain to application/x-perl didn't do the trick. Instead of running the script the server offered to download its source. I'm not exactly sure if changing this directive is the right approach. Telling apache to read the shebang-line when there is no extension sounds much better to me. I hope someone with more experience on this topic can help me out.

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• java developer who wants to raise skill level for better career growth [closed]

  - by Rahul Shivsharan

  I have an experience in Java language and in JEE related Framework for about 5 years. In these 5 years i have worked on Core java, Spring, Hibernate, JPA, Struts 1. Now just to be prepared for the near future, i am thinking to learn some new programming language or some new technology, this will help me out to be a more elligible employee. So my question to you is, which new technology or language should i learn, my target is for next 3 years. So just in case if Java fades out (thought it won't) than i can jump on to this newly learned stuff. Where should i start from ? Should i learn some other language in JVM like Scala, Clojure, Groovy, JRuby ? Or should i learn some altogether different language like Python or Erlang, Perl ? Or new technology which is related to NoSQL, like MongoDB, Hadoop, CouchDB. Or learn few current happening things in market like RoR, Node.js, LessCss or Sass, Coffee Script ? Can anybody give me some hint,

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• Remote Diagnostic Agent (RDA) version 4.30

  - by inowodwo

  posted by Maurice Bauhahn Remote Diagnostic Agent (RDA) version 4.30 was released on December 11th A free download can be accessed via Knowledge Management article 314422.1 and installed in any Enterprise Performance Management 11.1.2.x environment. EPM-specific instructions are available in Knowledge Management article 1304885.1. This RDA version incorporates two new modules (EAS=Essbase Administration Services; HWA=Hyperion Web Analysis) and improvements in modules and profiles relating to twelve other Hyperion applications (EPM, EPMA, ESS, FCM, HFM, HFR, HIR, HPL, HPSV, HSS, PR, and HSV). To follow best practice, run related RDA profiles [for example: "perl rda.pl -vnSCRPp Hyperion1112_EAS"] and attach the output zip file [by default in \rda\output\] to your service requests. The comprehensive set of details provided in such output files should help technicians to avoid delays in handling service requests (by avoiding ping-pong communications resulting from repeated requests for additional values).

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• OpenShift : la compilation des applications Java dans le Cloud désormais possible, Red Hat étend sa plateforme PaaS

  OpenShift : le développement et la compilation des applications Java dans le Cloud désormais possible Red Hat étend sa plateforme PaaS Red Hat vient d'étendre sa plateforme d'hébergement Cloud OpenShift, qui peut désormais être utilisée non seulement pour déployer des applications, mais également pour développer des projets en utilisant le Cloud. OpenShift est une solution PaaS (Platform as a Service) qui avait été lancée en mai dernier par par Red Hat pour les développeurs open source, afin de concurrencer Windows Azure et Google App Engine. La plateforme permet d'héberger et exécuter des applications en Java, Ruby, Python, PHP et Perl. OpenShift supporte les bas...

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• Assemble static site from templates? (don't want to reinvent the wheel)

  - by raindog308

  I have a site that is 100% static content (no php, just some javascript). There's several "blocks" like the header, menu, footer, etc. that are the same on each page. Rather than do a lot of copy/pasting, I was thinking of some kind of template system where I could run a CLI command (in php, perl, python, shell, whatever) and have it replace all the block tags with the actual block text. I did see some answers in this question, but those seem oriented towards "we provide the style and layout, you provide the text". In my case, I have everything as far as layout, css, etc. - just want to do a glorified sed. Before I invent the wheel, I was wondering if there was a tool out there already.

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• Framework for interaction between web-page and server-side script

  - by Carrier

  I want to make a web-page that will have several controls elements, among which there are elements like check-boxes, radio-buttons, "range selectors" (one can specify the min and max value, like it is done when you select range for prices in the online markets). The new values shall be sent to the "server-side", once changed (without any Submit buttons etc), and the "server-side" can return something (one or more numbers, etc). Does anyone know a good ajax-like framework that allows (with minimal adaptation / changes) to make such solution in an easy way? It will be good if the server-side of existing solution will be in Perl (not a big deal, but I know it much better than PHP or something else). Set of controls might change and depend on other parameter, so adding one extra element should not cause rewriting the whole thing. P.S.: I haven't working in this area for quite a while, so not aware of existing solutions in this area, and don't want to invent the wheel and write everything from scratch for something that already exist (at least, I hope so). Thanks in advance!

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• Are "backwards" terminators for if and case unique to shell scripting?

  - by tomjakubowski

  In bash at least, if and case blocks are closed like this: if some-expr then echo "hello world" fi case $some-var in [1-5]) do-a-thing ;; *) do-another-thing esac as opposed to the more typical close of end or endif/endcase. As far as I know, this rather funny convention is unique to shell scripting and I have never seen such an odd block terminator anywhere else. Sometimes things like this have an origin in another language (like Ruby's elsif coming from Perl), or a strange justification. Does this feature of shell scripting have a story behind it? Is it found in other languages?

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• I'm a PeopleSoft Developer. Should I learn other languages (C# Java...)?

  - by PSDev

  I've been doing PeopleSoft development for 2 years. Recently, I want to relocate and find out there are not that many PeopleSoft development out there. 90% of the vacant positions are contract type of jobs. I'd rather get a full time permanent position. In PS, I do a lot of maintenance rather than new programming. It does get very boring. Also, I'm not sure if Oracle will one day pull off the plug for PS. What language is in most demand and also offers above average salary? Is it C#, Java, Python, Perl, ...? Thanks.

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